Rorug02G0516200

FCP1 homology domain-containing protein C1271.03c-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000879
Physical Location & Seq
Forward (+)
64758860 .. 64764079
5220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0516200.1

Sequence Viewer

Length: 1695 bp
ATGAGGTTCATGGACAATGCGGTGCGTTTCGATCGCGAATCGAATAGAATTCAAGTCAAGTATGTACTCAGCATTGATGGCAACGATGGGATTGAGCTCAAGACAGTGTTACAAGCTTTGGATGTGGTTGACATTTTACACTATGGACTTGCTAAAGTAGCTGACTTGATAATCAAGCATGTCATCTCTCCACCTCTAAATTCTGGAGCACCTGTGTCCTTGGTAACAGAAATAAATCCAAACTCACAAGCAATGACTGAGGCGATACTGAAGATTGTACCATCAAATGATCCTAAGATTGAAAAAATGGACGGGGAGACTATCTATCCAAGGATTATTGAGGTTATAAAGTTTATTGACAAGTACATTTGCTTTCAAGAGGGATCTTGGACTCGATGCTTTGGAAGATTGACATGGCCAAGAATATCAGAGTTGATTATTTCTAAGTTTCTTTCTAAGGTTGTCCCCCAAGATGCTTCAAAACTTGCAAACTTTCTAAAGATCATCAATTGTACTTCTGAATTTGAGATTGCTTTAAGGGAGATGAAGTTTATTTCAGTATCTGAAAACAAAGATAACCAGTTGAGCAGTTTTGCTGAAAACGTCGAGGTTCACTTCGCATCCAGGAAGAAGACAGAAATCTTGGGAAGAGCTAGGAATTTGCTTCTACAATGTGATTTTGCTATTTCTCACAATACAAGGAGGAAAGGTAAGCACGATGGGGCTGCTAGCAATACACCAGAAGATGTTGACTTGCTATTTCTTTCGGAGCGGTGTGTGGTGTCCAAAGCAGCAATTCAATTAATGAAGTTAGTGCATGAGACACTCAAGGATGTCTGCTTGTCATCCCCTAGAGTTGCATTGGAATTTTATCGTGCTGCTAGGGATGTACTACTTCTATATGAAGTTGTCATACCTGTCAAGCTAGAACGGCAGCTTGATGGCATCAACCAGGTTGCTGTTCTGATGCACAACGATTGCCTTTATCTATCTCAGGAGATTCTTGGGCTTGCATTTGAGTATCGCTCAGACTTTCCAACTTCAATGAAAGATCATGCTGTGTTTGTTGACATGGCTCCAAGATTTCATCTCATGGCAGAGGGAATACTGCAGAGACAAATCCAACTTGTGATTCATAGCTTGAGAGAGGCTCTAGATGGCGCTGATGGATTCCAGAATACCCATCAAATGCAACAATTCCAATCTGCAAAATTTAGTATAGATCAGGTTGTTTTCATATTGGAGAAAGTACACATTATCTGGGAGCCACTCTTATTACCTTCAACTTACAAGAGAAGCATGTGTATGATTCTAGAGTCAGTTTTTTCTAGAATCACAAAAGACATACTCCTTTTAGATGATATGGCAGCAGAAGAAACGTTAGAGCTTCAAAGACTGATTCACTTGATGCTGGAAAACCTAACTTCTTTGTTGGGGTCCCTGGCTGCTCTTCAAGTTGAGAAGTCACAAGCGGGCATGACATCTCTTGATGATCTTATACCATCATTACGAAAAATTCGGAAATTGGCAGAATTATTAGATATGCCCTTGAAAGCAATCACTACAGCTTGGGAAACTGGAGAACTGCGAAATGGTGGCTTTACATTGTCAGAGGTAGAATATTTCATCAAAGCAATTTTTCAAGACTCGCCTTTGCGGAAAGACTGCTTATGGAGGATACATGGCTACTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NIF

Protein Analysis

564

Amino Acids

64.13

Weight (kDa)

6.02

Isoelectric Point (pI)

41.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zw10_middle PF20665 1 - 222 5.7e-46 Centromere/kinetochore protein zw10, middle domain
ZW10_C PF20666 254 - 383 4.5e-41 Centromere/kinetochore protein zw10, C-terminal
ZW10_C2 PF22766 406 - 560 3.2e-40 ZW10 C-terminal helical domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 347
AccBSI CCGCTC 1 cut(s) 772
AccII CGCG 1 cut(s) 36
AciI CCGC 4 cut(s) 20, 772, 1472, 1657
AclI AACGTT 1 cut(s) 1379
AclWI GGATC 2 cut(s) 284, 391
AcoI YGGCCR 1 cut(s) 416
AcsI RAATTY 7 cut(s) 48, 199, 521, 658, 866, 1211, 1515
AcuI CTGAAG 1 cut(s) 290
AfaI GTAC 6 cut(s) 66, 279, 365, 514, 891, 1251
AjnI CCWGG 3 cut(s) 623, 951, 1440
AjuI GAANNNNNNNTTGG 2 cut(s) 1116, 1148
AluBI AGCT 9 cut(s) 97, 116, 161, 653, 925, 937, 1140, 1387, 1568
AluI AGCT 9 cut(s) 97, 116, 161, 653, 925, 937, 1140, 1387, 1568
Alw21I GWGCWC 2 cut(s) 99, 211
Alw26I GTCTC 3 cut(s) 311, 815, 1108
AlwI GGATC 2 cut(s) 284, 391
AlwNI CAGNNNCTG 1 cut(s) 563
AoxI GGCC 1 cut(s) 416
ApeKI GCWGC 6 cut(s) 725, 791, 878, 934, 1367, 1445
ApoI RAATTY 7 cut(s) 48, 199, 521, 658, 866, 1211, 1515
AseI ATTAAT 1 cut(s) 803
AspLEI GCGC 1 cut(s) 1163
AspS9I GGNCC 1 cut(s) 1437
AsuNHI GCTAGC 1 cut(s) 728
AvaII GGWCC 1 cut(s) 1437
BalI TGGCCA 1 cut(s) 418
BanII GRGCYC 1 cut(s) 99
BarI GAAGNNNNNNTAC 2 cut(s) 897, 929
BbsI GAAGAC 1 cut(s) 638
Bbv12I GWGCWC 2 cut(s) 99, 211
BbvI GCAGC 6 cut(s) 712, 803, 865, 946, 1379, 1432
BccI CCATC 9 cut(s) 71, 80, 289, 713, 935, 1151, 1160, 1191, 1510
BceAI ACGGC 1 cut(s) 947
BcgI CGANNNNNNTGC 2 cut(s) 707, 741
BciT130I CCWGG 3 cut(s) 625, 953, 1442
BciVI GTATCC 1 cut(s) 1671
BcoDI GTCTC 3 cut(s) 311, 815, 1108
BfaI CTAG 8 cut(s) 654, 729, 852, 882, 926, 1154, 1313, 1329
BfmI CTRYAG 2 cut(s) 1109, 1563
BfoI RGCGCY 1 cut(s) 1164
BfuI GTATCC 1 cut(s) 1671
BisI GCNGC 6 cut(s) 726, 792, 879, 935, 1368, 1446
BlsI GCNGC 6 cut(s) 727, 793, 880, 936, 1369, 1447
Bme1390I CCNGG 3 cut(s) 625, 953, 1442
Bme18I GGWCC 1 cut(s) 1437
BmgT120I GGNCC 1 cut(s) 1437
BmiI GGNNCC 4 cut(s) 1077, 1266, 1438, 1439
BmrFI CCNGG 3 cut(s) 625, 953, 1442
BmsI GCATC 6 cut(s) 386, 463, 629, 954, 957, 1398
BmtI GCTAGC 1 cut(s) 732
BpiI GAAGAC 1 cut(s) 638
BplI GAGNNNNNCTC 4 cut(s) 1010, 1042, 1135, 1167
BpmI CTGGAG 2 cut(s) 225, 1599
BpuEI CTTGAG 3 cut(s) 83, 812, 1162
BsaJI CCNNGG 3 cut(s) 219, 329, 1440
BsaXI ACNNNNNCTCC 6 cut(s) 198, 228, 533, 563, 694, 724
Bse1I ACTGG 2 cut(s) 580, 1582
Bse3DI GCAATG 1 cut(s) 258
BseBI CCWGG 3 cut(s) 625, 953, 1442
BseDI CCNNGG 3 cut(s) 219, 329, 1440
BseGI GGATG 5 cut(s) 127, 620, 838, 845, 892
BseMI GCAATG 1 cut(s) 258
BseMII CTCAG 4 cut(s) 82, 249, 1007, 1041
BseNI ACTGG 2 cut(s) 580, 1582
BseXI GCAGC 6 cut(s) 712, 803, 865, 946, 1379, 1432
Bsh1236I CGCG 1 cut(s) 36
Bsh1285I CGRYCG 1 cut(s) 34
BshFI GGCC 1 cut(s) 418
BsiEI CGRYCG 1 cut(s) 34
BsiHKAI GWGCWC 2 cut(s) 99, 211
BslFI GGGAC 2 cut(s) 449, 1423
BsmAI GTCTC 3 cut(s) 311, 815, 1108
BsmFI GGGAC 2 cut(s) 449, 1423
BsnI GGCC 1 cut(s) 418
Bsp1286I GDGCHC 2 cut(s) 99, 211
Bsp143I GATC 7 cut(s) 31, 289, 383, 501, 1051, 1222, 1492
Bsp68I TCGCGA 1 cut(s) 36
BspACI CCGC 4 cut(s) 20, 772, 1472, 1657
BspANI GGCC 1 cut(s) 418
BspCNI CTCAG 4 cut(s) 81, 250, 1006, 1040
BspFNI CGCG 1 cut(s) 36
BspLI GGNNCC 4 cut(s) 1077, 1266, 1438, 1439
BspMAI CTGCAG 1 cut(s) 1113
BspOI GCTAGC 1 cut(s) 732
BspPI GGATC 2 cut(s) 284, 391
BspQI GCTCTTC 2 cut(s) 643, 1455
BsrBI CCGCTC 1 cut(s) 772
BsrDI GCAATG 1 cut(s) 258
BsrI ACTGG 2 cut(s) 580, 1582
BssECI CCNNGG 3 cut(s) 219, 329, 1440
BssMI GATC 7 cut(s) 31, 289, 383, 501, 1051, 1222, 1492
BssT1I CCWWGG 2 cut(s) 219, 329
Bst2UI CCWGG 3 cut(s) 625, 953, 1442
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 2 cut(s) 643, 1455
BstC8I GCNNGC 3 cut(s) 730, 1011, 1474
BstDEI CTNAG 7 cut(s) 68, 258, 294, 444, 456, 993, 1027
BstF5I GGATG 5 cut(s) 127, 620, 838, 845, 892
BstFNI CGCG 1 cut(s) 36
BstH2I RGCGCY 1 cut(s) 1164
BstHHI GCGC 1 cut(s) 1163
BstKTI GATC 7 cut(s) 34, 292, 386, 504, 1054, 1225, 1495
BstMAI GTCTC 3 cut(s) 311, 815, 1108
BstMBI GATC 7 cut(s) 31, 289, 383, 501, 1051, 1222, 1492
BstMCI CGRYCG 1 cut(s) 34
BstMWI GCNNNNNNNGC 3 cut(s) 78, 158, 931
BstNI CCWGG 3 cut(s) 625, 953, 1442
BstNSI RCATGY 2 cut(s) 182, 1303
BstSCI CCNGG 3 cut(s) 623, 951, 1440
BstSFI CTRYAG 2 cut(s) 1109, 1563
BstUI CGCG 1 cut(s) 36
BstV1I GCAGC 6 cut(s) 712, 803, 865, 946, 1379, 1432
BstV2I GAAGAC 1 cut(s) 638
BstX2I RGATCY 1 cut(s) 383
BstYI RGATCY 1 cut(s) 383
BsuI GTATCC 1 cut(s) 1671
BsuRI GGCC 1 cut(s) 418
BtsCI GGATG 5 cut(s) 127, 620, 838, 845, 892
BtsIMutI CAGTG 1 cut(s) 111
BtuMI TCGCGA 1 cut(s) 36
Cac8I GCNNGC 3 cut(s) 730, 1011, 1474
CaiI CAGNNNCTG 1 cut(s) 563
CfoI GCGC 1 cut(s) 1163
Cfr13I GGNCC 1 cut(s) 1437
CsiI ACCWGGT 1 cut(s) 951
Csp6I GTAC 6 cut(s) 65, 278, 364, 513, 890, 1250
CviQI GTAC 6 cut(s) 65, 278, 364, 513, 890, 1250
DdeI CTNAG 7 cut(s) 68, 258, 294, 444, 456, 993, 1027
DpnI GATC 7 cut(s) 33, 291, 385, 503, 1053, 1224, 1494
DpnII GATC 7 cut(s) 31, 289, 383, 501, 1051, 1222, 1492
EaeI YGGCCR 1 cut(s) 416
Eam1104I CTCTTC 2 cut(s) 643, 1455
EarI CTCTTC 2 cut(s) 643, 1455
Ecl136II GAGCTC 1 cut(s) 97
Eco130I CCWWGG 2 cut(s) 219, 329
Eco24I GRGCYC 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 1437
Eco53kI GAGCTC 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 97
EcoO109I RGGNCCY 1 cut(s) 1437
EcoRI GAATTC 1 cut(s) 48
EcoRII CCWGG 3 cut(s) 623, 951, 1440
EcoT14I CCWWGG 2 cut(s) 219, 329
EcoT38I GRGCYC 1 cut(s) 99
ErhI CCWWGG 2 cut(s) 219, 329
FaqI GGGAC 2 cut(s) 449, 1423
FauI CCCGC 1 cut(s) 1465
Fnu4HI GCNGC 6 cut(s) 726, 792, 879, 935, 1368, 1446
FokI GGATG 5 cut(s) 134, 607, 832, 845, 899
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 6 cut(s) 726, 792, 879, 935, 1368, 1446
FspBI CTAG 8 cut(s) 654, 729, 852, 882, 926, 1154, 1313, 1329
GlaI GCGC 1 cut(s) 1162
GluI GCNGC 6 cut(s) 726, 792, 879, 935, 1368, 1446
GsuI CTGGAG 2 cut(s) 225, 1599
HaeII RGCGCY 1 cut(s) 1164
HaeIII GGCC 1 cut(s) 418
HhaI GCGC 1 cut(s) 1163
Hin6I GCGC 1 cut(s) 1161
HinP1I GCGC 1 cut(s) 1161
HincII GTYRAC 3 cut(s) 130, 751, 1069
HindII GTYRAC 3 cut(s) 130, 751, 1069
HindIII AAGCTT 1 cut(s) 114
Hpy166II GTNNAC 5 cut(s) 130, 613, 751, 1069, 1252
Hpy188I TCNGA 8 cut(s) 430, 520, 565, 769, 966, 1030, 1521, 1612
Hpy8I GTNNAC 5 cut(s) 130, 613, 751, 1069, 1252
Hpy99I CGWCG 1 cut(s) 608
HpyAV CCTTC 1 cut(s) 1290
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 2 cut(s) 603, 1379
HpyCH4V TGCA 8 cut(s) 488, 817, 860, 970, 1013, 1111, 1192, 1208
HpyF10VI GCNNNNNNNGC 3 cut(s) 78, 158, 931
HpyF3I CTNAG 7 cut(s) 68, 258, 294, 444, 456, 993, 1027
HpySE526I ACGT 2 cut(s) 603, 1379
HspAI GCGC 1 cut(s) 1161
KflI GGGWCCC 1 cut(s) 1437
Kzo9I GATC 7 cut(s) 31, 289, 383, 501, 1051, 1222, 1492
LguI GCTCTTC 2 cut(s) 643, 1455
LmnI GCTCC 4 cut(s) 206, 769, 1081, 1264
Lsp1109I GCAGC 6 cut(s) 712, 803, 865, 946, 1379, 1432
LweI GCATC 6 cut(s) 386, 463, 629, 954, 957, 1398
MabI ACCWGGT 1 cut(s) 951
MaeI CTAG 8 cut(s) 654, 729, 852, 882, 926, 1154, 1313, 1329
MaeII ACGT 2 cut(s) 603, 1379
MaeIII GTNAC 3 cut(s) 108, 223, 1464
MalI GATC 7 cut(s) 33, 291, 385, 503, 1053, 1224, 1494
MbiI CCGCTC 1 cut(s) 772
MboI GATC 7 cut(s) 31, 289, 383, 501, 1051, 1222, 1492
MboII GAAGA 8 cut(s) 283, 417, 640, 643, 660, 755, 1385, 1442
MfeI CAATTG 1 cut(s) 508
MflI RGATCY 1 cut(s) 383
MhlI GDGCHC 2 cut(s) 99, 211
MlsI TGGCCA 1 cut(s) 418
MluNI TGGCCA 1 cut(s) 418
MlyI GAGTC 3 cut(s) 385, 1325, 1640
MmeI TCCRAC 2 cut(s) 1061, 1147
Mox20I TGGCCA 1 cut(s) 418
MscI TGGCCA 1 cut(s) 418
MseI TTAA 3 cut(s) 536, 803, 1693
MslI CAYNNNNRTG 1 cut(s) 1304
Msp20I TGGCCA 1 cut(s) 418
MspR9I CCNGG 3 cut(s) 625, 953, 1442
MunI CAATTG 1 cut(s) 508
MvaI CCWGG 3 cut(s) 625, 953, 1442
MvnI CGCG 1 cut(s) 36
MwoI GCNNNNNNNGC 3 cut(s) 78, 158, 931
NdeII GATC 7 cut(s) 31, 289, 383, 501, 1051, 1222, 1492
NheI GCTAGC 1 cut(s) 728
NlaIV GGNNCC 4 cut(s) 1077, 1266, 1438, 1439
NmuCI GTSAC 1 cut(s) 1464
NruI TCGCGA 1 cut(s) 36
NspI RCATGY 2 cut(s) 182, 1303
PciSI GCTCTTC 2 cut(s) 643, 1455
PfeI GAWTC 7 cut(s) 38, 1000, 1132, 1170, 1309, 1332, 1399
PfoI TCCNGGA 1 cut(s) 623
PkrI GCNGC 6 cut(s) 727, 793, 880, 936, 1369, 1447
Ple19I CGATCG 1 cut(s) 34
PleI GAGTC 3 cut(s) 385, 1324, 1640
PpsI GAGTC 3 cut(s) 385, 1324, 1640
PpuMI RGGWCCY 1 cut(s) 1437
PshBI ATTAAT 1 cut(s) 803
PsiI TTATAA 1 cut(s) 347
Psp124BI GAGCTC 1 cut(s) 99
Psp1406I AACGTT 1 cut(s) 1379
Psp5II RGGWCCY 1 cut(s) 1437
Psp6I CCWGG 3 cut(s) 623, 951, 1440
PspGI CCWGG 3 cut(s) 623, 951, 1440
PspN4I GGNNCC 4 cut(s) 1077, 1266, 1438, 1439
PspPI GGNCC 1 cut(s) 1437
PspPPI RGGWCCY 1 cut(s) 1437
PstI CTGCAG 1 cut(s) 1113
PstNI CAGNNNCTG 1 cut(s) 563
PsuI RGATCY 1 cut(s) 383
PvuI CGATCG 1 cut(s) 34
RruI TCGCGA 1 cut(s) 36
RsaI GTAC 6 cut(s) 66, 279, 365, 514, 891, 1251
RsaNI GTAC 6 cut(s) 65, 278, 364, 513, 890, 1250
RseI CAYNNNNRTG 1 cut(s) 1304
SacI GAGCTC 1 cut(s) 99
SapI GCTCTTC 2 cut(s) 643, 1455
SaqAI TTAA 3 cut(s) 536, 803, 1693
SatI GCNGC 6 cut(s) 726, 792, 879, 935, 1368, 1446
Sau3AI GATC 7 cut(s) 31, 289, 383, 501, 1051, 1222, 1492
Sau96I GGNCC 1 cut(s) 1437
SchI GAGTC 3 cut(s) 385, 1325, 1640
ScrFI CCNGG 3 cut(s) 625, 953, 1442
SduI GDGCHC 2 cut(s) 99, 211
SexAI ACCWGGT 1 cut(s) 951
SfaNI GCATC 6 cut(s) 386, 463, 629, 954, 957, 1398
SfcI CTRYAG 2 cut(s) 1109, 1563
SinI GGWCC 1 cut(s) 1437
SmiMI CAYNNNNRTG 1 cut(s) 1304
SmlI CTYRAG 3 cut(s) 98, 827, 1141
SmoI CTYRAG 3 cut(s) 98, 827, 1141
SsiI CCGC 4 cut(s) 20, 772, 1472, 1657
SspI AATATT 1 cut(s) 1622
SspMI CTAG 8 cut(s) 654, 729, 852, 882, 926, 1154, 1313, 1329
SstI GAGCTC 1 cut(s) 99
StyD4I CCNGG 3 cut(s) 623, 951, 1440
StyI CCWWGG 2 cut(s) 219, 329
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 2 cut(s) 606, 1382
TaqI TCGA 4 cut(s) 30, 41, 394, 606
TatI WGTACW 5 cut(s) 64, 363, 512, 889, 1249
TfiI GAWTC 7 cut(s) 38, 1000, 1132, 1170, 1309, 1332, 1399
Tru1I TTAA 3 cut(s) 536, 803, 1693
Tru9I TTAA 3 cut(s) 536, 803, 1693
TscAI CASTG 1 cut(s) 111
TseFI GTSAC 1 cut(s) 1464
TseI GCWGC 6 cut(s) 725, 791, 878, 934, 1367, 1445
Tsp45I GTSAC 1 cut(s) 1464
TspDTI ATGAA 8 cut(s) 560, 821, 918, 1061, 1076, 1124, 1225, 1615
TspRI CASTG 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 1437
VspI ATTAAT 1 cut(s) 803
XapI RAATTY 7 cut(s) 48, 199, 521, 658, 866, 1211, 1515
XbaI TCTAGA 3 cut(s) 1153, 1312, 1328
XceI RCATGY 2 cut(s) 182, 1303
XspI CTAG 8 cut(s) 654, 729, 852, 882, 926, 1154, 1313, 1329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.