Prupe.3G252300_v2.0.a1

FCP1 homology domain-containing protein C1271.03c-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000879
Physical Location & Seq
Forward (+)
24190555 .. 24195014
4460 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G252300.1

Sequence Viewer

Length: 1116 bp
ATGATCAAGAGTACTAGTTCCTTTTCAATGACCAAGGGCGAAGTGCAAGTTAATCTCTTAGTAAATTCAGCACCTCGGCCTTCCTTTGTTAGAATTCAGGAGATGGGTATGGAAACTACCAAAAATAACGTGAAATCGAATCAAGTGTTGAAAAAGAAAACAAGAAGGAGACGTAGGATGAAGAAATCAAATCTACTGCAAGATATTAGTCTATCTGATAACCTGCGTCAGGAATATGGTCAGAGTGACACTAATCATATGCATAGATTGTCAACTTTAAGTCTAGTTGATGAAAGAAGTGATGACATAGTAGTTATTTCATCAGGAGCTGTTAAAACTATGAATGAAGTGGACCACAGCTCAGGGATTTCAAATAGGTCAATTGTGAGAGCACCTGTTTGTGATATAGAGAAAAAGCTTCTTATTCTTGATATTAATGGACTACTTGCGGATATAGTCTCTCCTCCTCCAAAGGGACTTGCATCTGACAAACGAATTGCAGGGCGGGCAATTTTCAAGAGGCCCTTCTATCTTGATTTTCTTAAGTTCTGCTTTGAGCATTTCGAAGTGGGTGTGTGGTCTTCAAGATCCAAGAGAATTGTGGAACGAGTGCTTGATTATCTGATGGGTGATATGAAGCACAAGTTGCTGTTTTGTTGGGATCTATCCCATTGCACTGCAACAGGTTTCAGGACTCTAGAAAATAGGCATAAGACCTTGGTTTTTAAGGAACTGAGGAGAATATGGGAAAAACACGACCCTAGTCTTCCATGGGAGAAGGGCATTTATAATGAATCAAATACATTGTTGTTGGATGATTCCCCCTACAAAGCCTTGCTTAATCCTGCACATACTGCAGTCTTTCCTCATCCATACACGTTCCAACGAGGGAGCGACACTTCGTTAGGTCCTGGAGGTGATCTTCGGGTCTATCTGGAAGGGTTGGCTGCTGCTGAAAATATACAGGAGTTTATAGAGCAAGAGCCATTTGGCCAAAGTCCTATTAATGAAAGTAGTGCATCTTGGCCCTTCTACCTCAGGGTTCTTAGTACGGTGTATTCTGTAGATACCACCAACGTGACCAACATGACCTGTAATTCTTCCGTTCTGCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NIF

Protein Analysis

372

Amino Acids

42.2

Weight (kDa)

9.15

Isoelectric Point (pI)

48.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 789
Acc36I ACCTGC 1 cut(s) 231
AciI CCGC 2 cut(s) 449, 505
AclWI GGATC 2 cut(s) 582, 669
AcoI YGGCCR 1 cut(s) 991
AcsI RAATTY 2 cut(s) 64, 93
AfaI GTAC 2 cut(s) 13, 1051
AfiI CCNNNNNNNGG 2 cut(s) 229, 473
AflII CTTAAG 1 cut(s) 542
AflIII ACRYGT 1 cut(s) 876
AgsI TTSAA 5 cut(s) 27, 151, 372, 517, 585
AhlI ACTAGT 1 cut(s) 14
AjnI CCWGG 1 cut(s) 910
AleI CACNNNNGTG 1 cut(s) 1076
AluBI AGCT 3 cut(s) 329, 360, 418
AluI AGCT 3 cut(s) 329, 360, 418
Alw21I GWGCWC 1 cut(s) 394
Alw26I GTCTC 2 cut(s) 163, 463
AlwI GGATC 2 cut(s) 582, 669
AlwNI CAGNNNCTG 1 cut(s) 329
AoxI GGCC 4 cut(s) 77, 521, 991, 1025
ApeKI GCWGC 2 cut(s) 947, 950
ApoI RAATTY 2 cut(s) 64, 93
AseI ATTAAT 2 cut(s) 435, 1005
AspS9I GGNCC 4 cut(s) 352, 522, 908, 1026
AsuHPI GGTGA 2 cut(s) 641, 929
AsuII TTCGAA 1 cut(s) 564
AvaII GGWCC 2 cut(s) 352, 908
AxyI CCTNAGG 1 cut(s) 1037
BalI TGGCCA 1 cut(s) 993
BbsI GAAGAC 2 cut(s) 573, 758
Bbv12I GWGCWC 1 cut(s) 394
BbvI GCAGC 2 cut(s) 934, 937
BccI CCATC 2 cut(s) 97, 619
BciT130I CCWGG 1 cut(s) 912
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 2 cut(s) 163, 463
BcuI ACTAGT 1 cut(s) 14
BfaI CTAG 4 cut(s) 15, 284, 698, 762
BfmI CTRYAG 2 cut(s) 855, 1062
BfrI CTTAAG 1 cut(s) 542
BfuAI ACCTGC 1 cut(s) 231
BisI GCNGC 2 cut(s) 948, 951
BlsI GCNGC 2 cut(s) 949, 952
BmcAI AGTACT 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 912
Bme18I GGWCC 2 cut(s) 352, 908
BmgT120I GGNCC 4 cut(s) 352, 522, 908, 1026
BmrFI CCNGG 1 cut(s) 912
BmsI GCATC 2 cut(s) 491, 1028
BoxI GACNNNNGTC 1 cut(s) 762
BpiI GAAGAC 2 cut(s) 573, 758
BpmI CTGGAG 1 cut(s) 933
Bpu10I CCTNAGC 1 cut(s) 361
Bpu14I TTCGAA 1 cut(s) 564
BsaJI CCNNGG 4 cut(s) 33, 74, 717, 770
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 473
Bse21I CCTNAGG 1 cut(s) 1037
Bse3DI GCAATG 1 cut(s) 670
BseBI CCWGG 1 cut(s) 912
BseDI CCNNGG 4 cut(s) 33, 74, 717, 770
BseGI GGATG 3 cut(s) 183, 820, 868
BseLI CCNNNNNNNGG 2 cut(s) 229, 473
BseMI GCAATG 1 cut(s) 670
BseMII CTCAG 3 cut(s) 375, 725, 1051
BseRI GAGGAG 3 cut(s) 453, 456, 751
BseXI GCAGC 2 cut(s) 934, 937
BsgI GTGCAG 1 cut(s) 831
BshFI GGCC 4 cut(s) 79, 523, 993, 1027
BsiHKAI GWGCWC 1 cut(s) 394
BslFI GGGAC 1 cut(s) 489
BslI CCNNNNNNNGG 2 cut(s) 229, 473
BsmAI GTCTC 2 cut(s) 163, 463
BsmBI CGTCTC 1 cut(s) 163
BsmFI GGGAC 1 cut(s) 489
BsnI GGCC 4 cut(s) 79, 523, 993, 1027
Bsp119I TTCGAA 1 cut(s) 564
Bsp1286I GDGCHC 1 cut(s) 394
Bsp143I GATC 4 cut(s) 3, 587, 661, 919
Bsp19I CCATGG 1 cut(s) 770
BspACI CCGC 2 cut(s) 449, 505
BspANI GGCC 4 cut(s) 79, 523, 993, 1027
BspCNI CTCAG 3 cut(s) 374, 726, 1050
BspMAI CTGCAG 1 cut(s) 859
BspMI ACCTGC 1 cut(s) 231
BspPI GGATC 2 cut(s) 582, 669
BspT104I TTCGAA 1 cut(s) 564
BspTI CTTAAG 1 cut(s) 542
BsrDI GCAATG 1 cut(s) 670
BssECI CCNNGG 4 cut(s) 33, 74, 717, 770
BssMI GATC 4 cut(s) 3, 587, 661, 919
BssT1I CCWWGG 3 cut(s) 33, 717, 770
Bst2UI CCWGG 1 cut(s) 912
Bst4CI ACNGT 1 cut(s) 1054
BstAFI CTTAAG 1 cut(s) 542
BstAPI GCANNNNNTGC 2 cut(s) 646, 854
BstBI TTCGAA 1 cut(s) 564
BstC8I GCNNGC 1 cut(s) 507
BstDEI CTNAG 5 cut(s) 58, 361, 734, 1037, 1046
BstDSI CCRYGG 1 cut(s) 770
BstENI CCTNNNNNAGG 1 cut(s) 227
BstF5I GGATG 3 cut(s) 183, 820, 868
BstKTI GATC 4 cut(s) 6, 590, 664, 922
BstMAI GTCTC 2 cut(s) 163, 463
BstMBI GATC 4 cut(s) 3, 587, 661, 919
BstMWI GCNNNNNNNGC 3 cut(s) 506, 646, 854
BstNI CCWGG 1 cut(s) 912
BstPAI GACNNNNGTC 1 cut(s) 762
BstSCI CCNGG 1 cut(s) 910
BstSFI CTRYAG 2 cut(s) 855, 1062
BstV1I GCAGC 2 cut(s) 934, 937
BstV2I GAAGAC 2 cut(s) 573, 758
BstX2I RGATCY 2 cut(s) 587, 661
BstYI RGATCY 2 cut(s) 587, 661
Bsu36I CCTNAGG 1 cut(s) 1037
BsuRI GGCC 4 cut(s) 79, 523, 993, 1027
BtgI CCRYGG 1 cut(s) 770
BtsCI GGATG 3 cut(s) 183, 820, 868
BtsI GCAGTG 1 cut(s) 675
BtsIMutI CAGTG 1 cut(s) 675
BveI ACCTGC 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 507
CaiI CAGNNNCTG 1 cut(s) 329
Cfr13I GGNCC 4 cut(s) 352, 522, 908, 1026
CseI GACGC 1 cut(s) 215
Csp6I GTAC 2 cut(s) 12, 1050
CviAII CATG 2 cut(s) 771, 1087
CviQI GTAC 2 cut(s) 12, 1050
DdeI CTNAG 5 cut(s) 58, 361, 734, 1037, 1046
DpnI GATC 4 cut(s) 5, 589, 663, 921
DpnII GATC 4 cut(s) 3, 587, 661, 919
EaeI YGGCCR 1 cut(s) 991
Eco130I CCWWGG 3 cut(s) 33, 717, 770
Eco47I GGWCC 2 cut(s) 352, 908
Eco81I CCTNAGG 1 cut(s) 1037
EcoNI CCTNNNNNAGG 1 cut(s) 227
EcoO109I RGGNCCY 2 cut(s) 522, 908
EcoRI GAATTC 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 910
EcoT14I CCWWGG 3 cut(s) 33, 717, 770
EcoT22I ATGCAT 1 cut(s) 264
ErhI CCWWGG 3 cut(s) 33, 717, 770
Esp3I CGTCTC 1 cut(s) 163
FaeI CATG 2 cut(s) 774, 1090
FalI AAGNNNNNCTT 6 cut(s) 509, 541, 536, 568, 822, 854
FaqI GGGAC 1 cut(s) 489
FatI CATG 2 cut(s) 770, 1086
FauI CCCGC 1 cut(s) 498
FauNDI CATATG 1 cut(s) 258
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 948, 951
FokI GGATG 3 cut(s) 190, 827, 855
Fsp4HI GCNGC 2 cut(s) 948, 951
FspBI CTAG 4 cut(s) 15, 284, 698, 762
GluI GCNGC 2 cut(s) 948, 951
GsuI CTGGAG 1 cut(s) 933
HaeIII GGCC 4 cut(s) 79, 523, 993, 1027
HgaI GACGC 1 cut(s) 215
Hin1II CATG 2 cut(s) 774, 1090
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 4 cut(s) 139, 694, 794, 818
HphI GGTGA 2 cut(s) 641, 929
Hpy166II GTNNAC 2 cut(s) 273, 352
Hpy188I TCNGA 4 cut(s) 217, 243, 487, 624
Hpy8I GTNNAC 2 cut(s) 273, 352
HpyAV CCTTC 6 cut(s) 90, 159, 535, 772, 932, 1039
HpyCH4III ACNGT 1 cut(s) 1054
HpyCH4IV ACGT 4 cut(s) 129, 172, 878, 1077
HpyF10VI GCNNNNNNNGC 3 cut(s) 506, 646, 854
HpyF3I CTNAG 5 cut(s) 58, 361, 734, 1037, 1046
HpySE526I ACGT 4 cut(s) 129, 172, 878, 1077
Hsp92II CATG 2 cut(s) 774, 1090
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 587, 661, 919
LmnI GCTCC 2 cut(s) 326, 891
Lsp1109I GCAGC 2 cut(s) 934, 937
LweI GCATC 2 cut(s) 491, 1028
MaeI CTAG 4 cut(s) 15, 284, 698, 762
MaeII ACGT 4 cut(s) 129, 172, 878, 1077
MaeIII GTNAC 2 cut(s) 245, 1078
MalI GATC 4 cut(s) 5, 589, 663, 921
MboI GATC 4 cut(s) 3, 587, 661, 919
MboII GAAGA 5 cut(s) 193, 573, 758, 914, 1092
MfeI CAATTG 1 cut(s) 381
MflI RGATCY 2 cut(s) 587, 661
MhlI GDGCHC 1 cut(s) 394
MlsI TGGCCA 1 cut(s) 993
MluCI AATT 7 cut(s) 64, 93, 381, 495, 510, 597, 1096
MluNI TGGCCA 1 cut(s) 993
MlyI GAGTC 1 cut(s) 688
MmeI TCCRAC 2 cut(s) 792, 907
MnlI CCTC 9 cut(s) 84, 474, 477, 513, 729, 876, 881, 908, 1046
Mox20I TGGCCA 1 cut(s) 993
Mph1103I ATGCAT 1 cut(s) 264
MscI TGGCCA 1 cut(s) 993
MseI TTAA 8 cut(s) 51, 278, 333, 435, 543, 726, 840, 1005
MslI CAYNNNNRTG 1 cut(s) 1076
Msp20I TGGCCA 1 cut(s) 993
MspCI CTTAAG 1 cut(s) 542
MspR9I CCNGG 1 cut(s) 912
MunI CAATTG 1 cut(s) 381
MvaI CCWGG 1 cut(s) 912
MwoI GCNNNNNNNGC 3 cut(s) 506, 646, 854
NcoI CCATGG 1 cut(s) 770
NdeI CATATG 1 cut(s) 258
NdeII GATC 4 cut(s) 3, 587, 661, 919
NlaIII CATG 2 cut(s) 774, 1090
NmeAIII GCCGAG 1 cut(s) 55
NmuCI GTSAC 2 cut(s) 245, 1078
NsiI ATGCAT 1 cut(s) 264
NspV TTCGAA 1 cut(s) 564
OliI CACNNNNGTG 1 cut(s) 1076
PfeI GAWTC 3 cut(s) 139, 794, 818
PfoI TCCNGGA 1 cut(s) 910
PkrI GCNGC 2 cut(s) 949, 952
PleI GAGTC 1 cut(s) 688
PpsI GAGTC 1 cut(s) 688
PpuMI RGGWCCY 1 cut(s) 908
PshAI GACNNNNGTC 1 cut(s) 762
PshBI ATTAAT 2 cut(s) 435, 1005
PsiI TTATAA 1 cut(s) 789
Psp5II RGGWCCY 1 cut(s) 908
Psp6I CCWGG 1 cut(s) 910
PspGI CCWGG 1 cut(s) 910
PspPI GGNCC 4 cut(s) 352, 522, 908, 1026
PspPPI RGGWCCY 1 cut(s) 908
PstI CTGCAG 1 cut(s) 859
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 2 cut(s) 587, 661
RsaI GTAC 2 cut(s) 13, 1051
RsaNI GTAC 2 cut(s) 12, 1050
RseI CAYNNNNRTG 1 cut(s) 1076
SaqAI TTAA 8 cut(s) 51, 278, 333, 435, 543, 726, 840, 1005
SatI GCNGC 2 cut(s) 948, 951
Sau3AI GATC 4 cut(s) 3, 587, 661, 919
Sau96I GGNCC 4 cut(s) 352, 522, 908, 1026
ScaI AGTACT 1 cut(s) 13
SchI GAGTC 1 cut(s) 688
ScrFI CCNGG 1 cut(s) 912
SduI GDGCHC 1 cut(s) 394
SfaNI GCATC 2 cut(s) 491, 1028
SfcI CTRYAG 2 cut(s) 855, 1062
SfuI TTCGAA 1 cut(s) 564
SinI GGWCC 2 cut(s) 352, 908
SmiMI CAYNNNNRTG 1 cut(s) 1076
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
SpeI ACTAGT 1 cut(s) 14
Sse9I AATT 7 cut(s) 64, 93, 381, 495, 510, 597, 1096
SsiI CCGC 2 cut(s) 449, 505
SspMI CTAG 4 cut(s) 15, 284, 698, 762
StyD4I CCNGG 1 cut(s) 910
StyI CCWWGG 3 cut(s) 33, 717, 770
TaaI ACNGT 1 cut(s) 1054
TaiI ACGT 4 cut(s) 132, 175, 881, 1080
TaqI TCGA 2 cut(s) 137, 564
TasI AATT 7 cut(s) 64, 93, 381, 495, 510, 597, 1096
TatI WGTACW 1 cut(s) 11
TfiI GAWTC 3 cut(s) 139, 794, 818
Tru1I TTAA 8 cut(s) 51, 278, 333, 435, 543, 726, 840, 1005
Tru9I TTAA 8 cut(s) 51, 278, 333, 435, 543, 726, 840, 1005
TscAI CASTG 1 cut(s) 682
TseFI GTSAC 2 cut(s) 245, 1078
TseI GCWGC 2 cut(s) 947, 950
Tsp45I GTSAC 2 cut(s) 245, 1078
TspDTI ATGAA 8 cut(s) 194, 306, 309, 356, 360, 650, 807, 1023
TspGWI ACGGA 1 cut(s) 1093
TspRI CASTG 1 cut(s) 682
Vha464I CTTAAG 1 cut(s) 542
VpaK11BI GGWCC 2 cut(s) 352, 908
VspI ATTAAT 2 cut(s) 435, 1005
XagI CCTNNNNNAGG 1 cut(s) 227
XapI RAATTY 2 cut(s) 64, 93
XbaI TCTAGA 1 cut(s) 697
XcmI CCANNNNNNNNNTGG 1 cut(s) 598
XspI CTAG 4 cut(s) 15, 284, 698, 762
ZrmI AGTACT 1 cut(s) 13
Zsp2I ATGCAT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.