Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000879

Physical Location & Seq

Genomic Coordinates Reverse (-)

4209729 .. 4213349

Gene Structure 3621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16349

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGACGCCAGAAACAGATCCATCTCTTCAGCCTTCGCTTGCAATAATCTCTGAACAAGAGGTAGAGGTGCCACAGCCACTTAATACTGATGCACAACCACTTGTGGAGGGAGTAAGCACAACAAACTCGGAGAGTCCCAAGCCCAATGCAGAATTTAGTTGCTCACAAGAAACGAAGAAAAAGAATCCAAAGAGAAATCGCAAAACCAATGAGAATAAAGAGCTATTGGTGGAAACAATGACGCCAGAAGCAGATCTATCTCTTCAGCCTCCGCTTGCAATATTCTCTGAACAAGAGGTAGAGGTGGCACAACCACTTTATACTGGTACAGTGTGGAAAGAAACCAAGATTGATGAAGTTCCTTCCTTGTCACATTTGACTCCAAAAGCTGATACTGAAGTAGTTGCTATCGGTAGAGAGGGCAATCTTTCTCAGAAAAAGCTTCTGATTCTTGATATTAATGGGCTGCTTGCTGATATTGTCCAGATGGAAGTTTCTATCCCCAGTAGTTTTAAACCAGACACAATAATATCACGGAAAGCAGTTTTTAAGAGGCCATTTTGCGATGATTTTCTACAGTTCTGCTTTGACAGATTTAATGTGGGTGTGTGGTCTTCAAGAACCAAGGAAAATGTGAACTCGGTGATAGATTTTCTTTTGGGGGATTCCAAACATAAATTACTCTTTTGCTGGAACCAATCGCACTGCACTTCTACCAGTTTCAAGACGGTGGAGAACAAGAATAAGCCCCTCGTTTTGAAAGAGCTTAGAAAATTATGGGAGAAGCTTGAGCCTGATCTTCCTTGGGCGAGAGGAGAGTACAACGAATCCAACACAGTATTATTGGATGATTCTCCATACAAGGCTTTGCGCAATCCGGTGAACACCGCCATATTCCCCAATTCATATCAGTTCAGGAACAGAAAAGATTCTTCATTAGGACCTGGAGGCGATATCCGTTCTTACCTGGAAGGGTTAGCTATGGCTGAGAGTGCCCAAAAATATGTGGAACAGAATCCATTTGGTCAGAGACCCATAACGAAATCAAATCCTTCTTGGAACTTCTATAGGAGAGTTATAGAGGATGTAAAACCCCTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

367

Amino Acids

41.59

Weight (kDa)

5.7

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	147 - 330	1.6e-19	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29760 AT3G29760 AT3G29760 AT3G29760 AT3G29760
fragaria_vesca	FvH4_5g13671 FvH4_5g13671 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700
malus_domestica	MD06G1203100.v1.1 MD09G1068500.v1.1 MD14G1213700.v1.1 MD17G1061400.v1.1
prunus_persica	Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.5G206600_v2.0.a1
pyrus_communis	pycom06g18090 pycom12433g00100 pycom14g17710 pycom17g06130
rosa_chinensis	RchiOBHm_Chr1g0330571 RchiOBHm_Chr1g0330791 RchiOBHm_Chr1g0330841 RchiOBHm_Chr2g0165581 RchiOBHm_Chr7g0183261 RchiOBHm_Chr7g0183271
rosa_laevigata	RLG00000005061 RLG00000021541
rosa_multiflora	Rmu_sc0000815.1_g000003 Rmu_sc0005425.1_g000020 Rmu_sc0008744.1_g000011 Rmu_sc0014529.1_g000002 Rmu_sc0018426.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085710 Rroxscaffold_3G00270610
rosa_rugosa	Rorug02G0516200 Rorug05G0496600 Rorug05G0496600 Rorug05G0496600 Rorug06G0455700
rosa_samantha	Rh1AG107500 Rh1AG107600 Rh1AG111800 Rh1CG103400 Rh1CG106100 Rh1CG107100 Rh1DG113000 Rh2AG582300 Rh2BG594500 Rh2CG564400 Rh2DG604400 Rh7AG057700 Rh7BG057500 Rh7CG059100 Rh7DG057300
rosa_wichuraiana	Rw0G004370 Rw0G016070 Rw1G009080 Rw2G048580 Rw7G004720 Rw7G004730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	872
AccB1I	GGYRCC	1 cut(s)	67
AciI	CCGC	2 cut(s)	272, 888
AclWI	GGATC	1 cut(s)	11
AcsI	RAATTY	1 cut(s)	152
AcuI	CTGAAG	3 cut(s)	11, 248, 417
AcyI	GRCGYC	2 cut(s)	5, 242
AfaI	GTAC	2 cut(s)	328, 821
AgsI	TTSAA	3 cut(s)	618, 724, 760
AjnI	CCWGG	2 cut(s)	943, 966
AluBI	AGCT	6 cut(s)	223, 389, 442, 766, 787, 980
AluI	AGCT	6 cut(s)	223, 389, 442, 766, 787, 980
Alw26I	GTCTC	1 cut(s)	1024
AlwI	GGATC	1 cut(s)	11
AoxI	GGCC	1 cut(s)	554
ApeKI	GCWGC	1 cut(s)	466
ApoI	RAATTY	1 cut(s)	152
AseI	ATTAAT	1 cut(s)	459
Asp700I	GAANNNNTTC	1 cut(s)	928
AspLEI	GCGC	1 cut(s)	873
AspS9I	GGNCC	1 cut(s)	941
AsuHPI	GGTGA	2 cut(s)	655, 892
AvaII	GGWCC	1 cut(s)	941
BaeGI	GKGCMC	1 cut(s)	997
BaeI	ACNNNNGTAYC	2 cut(s)	384, 417
BanI	GGYRCC	1 cut(s)	67
BbsI	GAAGAC	1 cut(s)	606
BbvI	GCAGC	1 cut(s)	453
BccI	CCATC	2 cut(s)	28, 481
BciT130I	CCWGG	2 cut(s)	945, 968
BcoDI	GTCTC	1 cut(s)	1024
BfmI	CTRYAG	2 cut(s)	575, 1066
BglII	AGATCT	1 cut(s)	253
BisI	GCNGC	1 cut(s)	467
BlsI	GCNGC	1 cut(s)	468
Bme1390I	CCNGG	2 cut(s)	945, 968
Bme18I	GGWCC	1 cut(s)	941
BmgT120I	GGNCC	1 cut(s)	941
BmiI	GGNNCC	2 cut(s)	69, 695
BmrFI	CCNGG	2 cut(s)	945, 968
BmrI	ACTGGG	1 cut(s)	498
BmsI	GCATC	1 cut(s)	79
BmuI	ACTGGG	1 cut(s)	498
BpiI	GAAGAC	1 cut(s)	606
BpmI	CTGGAG	1 cut(s)	966
BpuEI	CTTGAG	1 cut(s)	809
BsaHI	GRCGYC	2 cut(s)	5, 242
BsaI	GGTCTC	1 cut(s)	1024
BsaJI	CCNNGG	2 cut(s)	624, 803
BsaWI	WCCGGW	1 cut(s)	877
Bse1I	ACTGG	3 cut(s)	328, 504, 717
BseBI	CCWGG	2 cut(s)	945, 968
BseDI	CCNNGG	2 cut(s)	624, 803
BseGI	GGATG	2 cut(s)	853, 1090
BseMII	CTCAG	3 cut(s)	446, 978, 1088
BseNI	ACTGG	3 cut(s)	328, 504, 717
BseRI	GAGGAG	1 cut(s)	828
BseSI	GKGCMC	1 cut(s)	997
BseXI	GCAGC	1 cut(s)	453
BsgI	GTGCAG	1 cut(s)	691
BshFI	GGCC	1 cut(s)	556
BshNI	GGYRCC	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	878
BslFI	GGGAC	1 cut(s)	120
BsmAI	GTCTC	1 cut(s)	1024
BsmFI	GGGAC	1 cut(s)	120
BsnI	GGCC	1 cut(s)	556
Bso31I	GGTCTC	1 cut(s)	1024
Bsp1286I	GDGCHC	1 cut(s)	997
Bsp143I	GATC	3 cut(s)	16, 253, 796
BspACI	CCGC	2 cut(s)	272, 888
BspANI	GGCC	1 cut(s)	556
BspCNI	CTCAG	3 cut(s)	445, 979, 1089
BspLI	GGNNCC	2 cut(s)	69, 695
BspPI	GGATC	1 cut(s)	11
BspT107I	GGYRCC	1 cut(s)	67
BspTNI	GGTCTC	1 cut(s)	1024
BsrI	ACTGG	3 cut(s)	328, 504, 717
BssECI	CCNNGG	2 cut(s)	624, 803
BssMI	GATC	3 cut(s)	16, 253, 796
BssNI	GRCGYC	2 cut(s)	5, 242
BssT1I	CCWWGG	2 cut(s)	624, 803
Bst2UI	CCWGG	2 cut(s)	945, 968
Bst4CI	ACNGT	4 cut(s)	331, 579, 730, 838
Bst6I	CTCTTC	2 cut(s)	30, 267
BstACI	GRCGYC	2 cut(s)	5, 242
BstC8I	GCNNGC	3 cut(s)	39, 276, 471
BstDEI	CTNAG	4 cut(s)	432, 767, 987, 1097
BstF5I	GGATG	2 cut(s)	853, 1090
BstHHI	GCGC	1 cut(s)	873
BstKTI	GATC	3 cut(s)	19, 256, 799
BstMAI	GTCTC	1 cut(s)	1024
BstMBI	GATC	3 cut(s)	16, 253, 796
BstMWI	GCNNNNNNNGC	1 cut(s)	992
BstNI	CCWGG	2 cut(s)	945, 968
BstSCI	CCNGG	2 cut(s)	943, 966
BstSFI	CTRYAG	2 cut(s)	575, 1066
BstSLI	GKGCMC	1 cut(s)	997
BstV1I	GCAGC	1 cut(s)	453
BstV2I	GAAGAC	1 cut(s)	606
BstX2I	RGATCY	2 cut(s)	16, 253
BstYI	RGATCY	2 cut(s)	16, 253
BsuRI	GGCC	1 cut(s)	556
BtgZI	GCGATG	1 cut(s)	579
BtsCI	GGATG	2 cut(s)	853, 1090
BtsI	GCAGTG	1 cut(s)	703
BtsIMutI	CAGTG	2 cut(s)	336, 703
Cac8I	GCNNGC	3 cut(s)	39, 276, 471
CfoI	GCGC	1 cut(s)	873
Cfr13I	GGNCC	1 cut(s)	941
CseI	GACGC	2 cut(s)	13, 250
Csp6I	GTAC	2 cut(s)	327, 820
CviQI	GTAC	2 cut(s)	327, 820
DdeI	CTNAG	4 cut(s)	432, 767, 987, 1097
DpnI	GATC	3 cut(s)	18, 255, 798
DpnII	GATC	3 cut(s)	16, 253, 796
DraI	TTTAAA	1 cut(s)	514
Eam1104I	CTCTTC	2 cut(s)	30, 267
EarI	CTCTTC	2 cut(s)	30, 267
Eco130I	CCWWGG	2 cut(s)	624, 803
Eco31I	GGTCTC	1 cut(s)	1024
Eco32I	GATATC	1 cut(s)	955
Eco47I	GGWCC	1 cut(s)	941
Eco57I	CTGAAG	3 cut(s)	11, 248, 417
EcoO109I	RGGNCCY	1 cut(s)	941
EcoRII	CCWGG	2 cut(s)	943, 966
EcoRV	GATATC	1 cut(s)	955
EcoT14I	CCWWGG	2 cut(s)	624, 803
ErhI	CCWWGG	2 cut(s)	624, 803
FaqI	GGGAC	1 cut(s)	120
Fnu4HI	GCNGC	1 cut(s)	467
FokI	GGATG	2 cut(s)	860, 1097
Fsp4HI	GCNGC	1 cut(s)	467
FspI	TGCGCA	1 cut(s)	872
GlaI	GCGC	1 cut(s)	872
GluI	GCNGC	1 cut(s)	467
GsuI	CTGGAG	1 cut(s)	966
HaeIII	GGCC	1 cut(s)	556
HapII	CCGG	1 cut(s)	878
HgaI	GACGC	2 cut(s)	13, 250
HhaI	GCGC	1 cut(s)	873
Hin1I	GRCGYC	2 cut(s)	5, 242
Hin6I	GCGC	1 cut(s)	871
HinP1I	GCGC	1 cut(s)	871
HindIII	AAGCTT	2 cut(s)	440, 785
HinfI	GANTC	9 cut(s)	133, 184, 379, 448, 665, 827, 851, 929, 1015
HpaII	CCGG	1 cut(s)	878
HphI	GGTGA	2 cut(s)	655, 892
Hpy166II	GTNNAC	2 cut(s)	637, 883
Hpy188I	TCNGA	6 cut(s)	52, 130, 289, 435, 447, 1029
Hpy188III	TCNNGA	5 cut(s)	452, 484, 618, 724, 916
Hpy8I	GTNNAC	2 cut(s)	637, 883
HpyAV	CCTTC	4 cut(s)	42, 372, 965, 1062
HpyCH4III	ACNGT	4 cut(s)	331, 579, 730, 838
HpyCH4V	TGCA	5 cut(s)	41, 92, 149, 278, 708
HpyF10VI	GCNNNNNNNGC	1 cut(s)	992
HpyF3I	CTNAG	4 cut(s)	432, 767, 987, 1097
Hsp92I	GRCGYC	2 cut(s)	5, 242
HspAI	GCGC	1 cut(s)	871
Kzo9I	GATC	3 cut(s)	16, 253, 796
Lsp1109I	GCAGC	1 cut(s)	453
LweI	GCATC	1 cut(s)	79
MaeIII	GTNAC	1 cut(s)	369
MalI	GATC	3 cut(s)	18, 255, 798
MboI	GATC	3 cut(s)	16, 253, 796
MboII	GAAGA	6 cut(s)	17, 187, 254, 606, 791, 924
MflI	RGATCY	2 cut(s)	16, 253
MhlI	GDGCHC	1 cut(s)	997
MluCI	AATT	4 cut(s)	152, 677, 773, 901
MlyI	GAGTC	2 cut(s)	142, 373
MmeI	TCCRAC	1 cut(s)	855
MroXI	GAANNNNTTC	1 cut(s)	928
MseI	TTAA	5 cut(s)	81, 459, 513, 549, 597
MspI	CCGG	1 cut(s)	878
MspR9I	CCNGG	2 cut(s)	945, 968
MvaI	CCWGG	2 cut(s)	945, 968
MwoI	GCNNNNNNNGC	1 cut(s)	992
NdeII	GATC	3 cut(s)	16, 253, 796
NlaIV	GGNNCC	2 cut(s)	69, 695
NmuCI	GTSAC	1 cut(s)	369
NsbI	TGCGCA	1 cut(s)	872
PdmI	GAANNNNTTC	1 cut(s)	928
PfeI	GAWTC	7 cut(s)	184, 448, 665, 827, 851, 929, 1015
PkrI	GCNGC	1 cut(s)	468
PleI	GAGTC	2 cut(s)	141, 373
PpsI	GAGTC	2 cut(s)	141, 373
PpuMI	RGGWCCY	1 cut(s)	941
PshBI	ATTAAT	1 cut(s)	459
Psp5II	RGGWCCY	1 cut(s)	941
Psp6I	CCWGG	2 cut(s)	943, 966
PspGI	CCWGG	2 cut(s)	943, 966
PspN4I	GGNNCC	2 cut(s)	69, 695
PspPI	GGNCC	1 cut(s)	941
PspPPI	RGGWCCY	1 cut(s)	941
PsuI	RGATCY	2 cut(s)	16, 253
RsaI	GTAC	2 cut(s)	328, 821
RsaNI	GTAC	2 cut(s)	327, 820
SaqAI	TTAA	5 cut(s)	81, 459, 513, 549, 597
SatI	GCNGC	1 cut(s)	467
Sau3AI	GATC	3 cut(s)	16, 253, 796
Sau96I	GGNCC	1 cut(s)	941
SchI	GAGTC	2 cut(s)	142, 373
ScrFI	CCNGG	2 cut(s)	945, 968
SduI	GDGCHC	1 cut(s)	997
SfaNI	GCATC	1 cut(s)	79
SfcI	CTRYAG	2 cut(s)	575, 1066
SinI	GGWCC	1 cut(s)	941
SmlI	CTYRAG	1 cut(s)	788
SmoI	CTYRAG	1 cut(s)	788
Sse9I	AATT	4 cut(s)	152, 677, 773, 901
SsiI	CCGC	2 cut(s)	272, 888
SspI	AATATT	1 cut(s)	282
StyD4I	CCNGG	2 cut(s)	943, 966
StyI	CCWWGG	2 cut(s)	624, 803
TaaI	ACNGT	4 cut(s)	331, 579, 730, 838
TasI	AATT	4 cut(s)	152, 677, 773, 901
TatI	WGTACW	1 cut(s)	819
TfiI	GAWTC	7 cut(s)	184, 448, 665, 827, 851, 929, 1015
Tru1I	TTAA	5 cut(s)	81, 459, 513, 549, 597
Tru9I	TTAA	5 cut(s)	81, 459, 513, 549, 597
TscAI	CASTG	2 cut(s)	336, 710
TseFI	GTSAC	1 cut(s)	369
TseI	GCWGC	1 cut(s)	466
Tsp45I	GTSAC	1 cut(s)	369
TspDTI	ATGAA	3 cut(s)	369, 894, 924
TspGWI	ACGGA	2 cut(s)	550, 947
TspRI	CASTG	2 cut(s)	336, 710
VpaK11BI	GGWCC	1 cut(s)	941
VspI	ATTAAT	1 cut(s)	459
XapI	RAATTY	1 cut(s)	152
XmnI	GAANNNNTTC	1 cut(s)	928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.