Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000879

Physical Location & Seq

Genomic Coordinates Forward (+)

35544091 .. 35547719

Gene Structure 3629 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g46700.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGATCCGGCACAGTACCTTCTCCATGACCAAGGGTGAACTCCAAGTTAACCTCTTGGCAAATTCAGCACCCCGGCCTTCCTTTGTTAAATTTCCAGAGACAGGAATGGACTCTACCAAAAATATCCAAGAATCCAGTCAAGTGTTGAAAAAGAGAACAAGAAGGAGACAGAGGAGGAAACCAAATCTAATGCAAAATACTGGCGTAGTTCATAATTTGCCTCAGGAATATGGGCACGGCGATACTAAATATGTGAATAGATTGTCAACTTTAAGTTTATCAGATGAAAGAGGTGGCGATGTATTAGTTATTTCATCTGGAGGGGTTAAAACTATTAGTGGAGAGGACATCAGCTCAGGAATTTTGCATGGTTCAATTGTGAAAGAACCGTTTAGGTATACAGGGAAAAAGCTTCTTATTCTTGACATTAATGGACTTATTGCGGATATAGTCTCCCCTCCTCCAAAGGGATTCGCATCTGACATAAGGATTGCAGGACGGGCAATTTTCAAGAGGCCATACTATCTTGATTTTCTTAAGTTCTGCTTTGAGCGTTTCGAAGTGGGTGTGTGGTCTTCAAGATCCAAGAAAATTGTGGAGAGAGTGGTTGATTATCTAATGGGTGATCTAAAGCACAATTTGTTGTTCTGCTGGGATCTATCCCACTGCACTACAACAGGGTTCAGAACTCTCGAAAACAAGCATAAGACCTTGGTTTTTAAGGATCTGAGAAAAATTTGGGAAAAAAACGACTCTAGTCTTCCATGGGAGAAGGGCATATATAATGAATCTAATACGTTATTGTTGGATGATTCTCCGTACAAAGCCCTGCTTAATCCTGCACATACCGGAGTCTTTCCTTATCCATACACGTTTCATGGAGGGTGCGACAATGCGTTAGGTCCTGGAGGTCGTCTTCGGACCTATTTGGAAAAGTTGGCCACGGCTGAAAATCTACAAGAGTATGTAGACCGACATCCGTTCGGTCAAAGACCTATTACTGAAAGAAGTGCATCTTGGGACTTTTACCTCAGGGTTCTCAATACAGTATGTGCTTTAGAAACCAAACGTATAACCTGGCATTCTACTTGTAAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

367

Amino Acids

41.72

Weight (kDa)

9.49

Isoelectric Point (pI)

42.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	137 - 213	6.4e-09	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29760 AT3G29760 AT3G29760 AT3G29760 AT3G29760
fragaria_vesca	FvH4_5g13671 FvH4_5g13671 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700
malus_domestica	MD06G1203100.v1.1 MD09G1068500.v1.1 MD14G1213700.v1.1 MD17G1061400.v1.1
prunus_persica	Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.5G206600_v2.0.a1
pyrus_communis	pycom06g18090 pycom12433g00100 pycom14g17710 pycom17g06130
rosa_chinensis	RchiOBHm_Chr1g0330571 RchiOBHm_Chr1g0330791 RchiOBHm_Chr1g0330841 RchiOBHm_Chr2g0165581 RchiOBHm_Chr7g0183261 RchiOBHm_Chr7g0183271
rosa_laevigata	RLG00000005061 RLG00000021541
rosa_multiflora	Rmu_sc0000815.1_g000003 Rmu_sc0005425.1_g000020 Rmu_sc0008744.1_g000011 Rmu_sc0014529.1_g000002 Rmu_sc0018426.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085710 Rroxscaffold_3G00270610
rosa_rugosa	Rorug02G0516200 Rorug05G0496600 Rorug05G0496600 Rorug05G0496600 Rorug06G0455700
rosa_samantha	Rh1AG107500 Rh1AG107600 Rh1AG111800 Rh1CG103400 Rh1CG106100 Rh1CG107100 Rh1DG113000 Rh2AG582300 Rh2BG594500 Rh2CG564400 Rh2DG604400 Rh7AG057700 Rh7BG057500 Rh7CG059100 Rh7DG057300
rosa_wichuraiana	Rw0G004370 Rw0G016070 Rw1G009080 Rw2G048580 Rw7G004720 Rw7G004730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	398, 969
AciI	CCGC	1 cut(s)	443
AclWI	GGATC	3 cut(s)	576, 663, 732
AcoI	YGGCCR	1 cut(s)	939
AcsI	RAATTY	4 cut(s)	61, 89, 360, 735
AfaI	GTAC	2 cut(s)	16, 821
AfiI	CCNNNNNNNGG	2 cut(s)	101, 467
AflII	CTTAAG	1 cut(s)	536
AflIII	ACRYGT	1 cut(s)	870
AgsI	TTSAA	4 cut(s)	148, 375, 511, 579
AjnI	CCWGG	2 cut(s)	904, 1076
AjuI	GAANNNNNNNTTGG	2 cut(s)	1000, 1032
AluBI	AGCT	2 cut(s)	354, 412
AluI	AGCT	2 cut(s)	354, 412
Alw26I	GTCTC	3 cut(s)	92, 160, 457
AlwI	GGATC	3 cut(s)	576, 663, 732
AoxI	GGCC	3 cut(s)	74, 515, 939
ApoI	RAATTY	4 cut(s)	61, 89, 360, 735
AseI	ATTAAT	1 cut(s)	429
AspS9I	GGNCC	2 cut(s)	902, 921
AsuC2I	CCSGG	1 cut(s)	73
AsuHPI	GGTGA	2 cut(s)	47, 635
AsuII	TTCGAA	1 cut(s)	558
AvaII	GGWCC	2 cut(s)	902, 921
AxyI	CCTNAGG	2 cut(s)	222, 1031
BaeGI	GKGCMC	1 cut(s)	237
BalI	TGGCCA	1 cut(s)	941
BbsI	GAAGAC	3 cut(s)	567, 752, 908
BceAI	ACGGC	2 cut(s)	253, 960
BciT130I	CCWGG	2 cut(s)	906, 1078
BcnI	CCSGG	1 cut(s)	73
BcoDI	GTCTC	3 cut(s)	92, 160, 457
BfaI	CTAG	1 cut(s)	756
BfrI	CTTAAG	1 cut(s)	536
Bme1390I	CCNGG	3 cut(s)	73, 906, 1078
Bme18I	GGWCC	2 cut(s)	902, 921
BmgT120I	GGNCC	2 cut(s)	902, 921
BmrFI	CCNGG	3 cut(s)	73, 906, 1078
BmsI	GCATC	2 cut(s)	485, 1022
BoxI	GACNNNNGTC	1 cut(s)	756
BpiI	GAAGAC	3 cut(s)	567, 752, 908
BpmI	CTGGAG	2 cut(s)	339, 927
Bpu10I	CCTNAGC	1 cut(s)	355
Bpu14I	TTCGAA	1 cut(s)	558
BpuMI	CCSGG	1 cut(s)	73
BsaBI	GATNNNNATC	1 cut(s)	475
BsaJI	CCNNGG	5 cut(s)	30, 71, 711, 764, 942
BsaWI	WCCGGW	1 cut(s)	848
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 467
Bse1I	ACTGG	2 cut(s)	135, 205
Bse21I	CCTNAGG	2 cut(s)	222, 1031
Bse8I	GATNNNNATC	1 cut(s)	475
BseBI	CCWGG	2 cut(s)	906, 1078
BseDI	CCNNGG	5 cut(s)	30, 71, 711, 764, 942
BseGI	GGATG	2 cut(s)	814, 976
BseJI	GATNNNNATC	1 cut(s)	475
BseLI	CCNNNNNNNGG	2 cut(s)	101, 467
BseMII	CTCAG	4 cut(s)	236, 369, 719, 1045
BseNI	ACTGG	2 cut(s)	135, 205
BseRI	GAGGAG	2 cut(s)	187, 450
BseSI	GKGCMC	1 cut(s)	237
BseYI	CCCAGC	1 cut(s)	651
BsgI	GTGCAG	2 cut(s)	652, 825
BshFI	GGCC	3 cut(s)	76, 517, 941
BsiSI	CCGG	3 cut(s)	7, 73, 849
BslFI	GGGAC	1 cut(s)	1034
BslI	CCNNNNNNNGG	2 cut(s)	101, 467
BsmAI	GTCTC	3 cut(s)	92, 160, 457
BsmFI	GGGAC	1 cut(s)	1034
BsmI	GAATGC	1 cut(s)	1081
BsnI	GGCC	3 cut(s)	76, 517, 941
Bsp119I	TTCGAA	1 cut(s)	558
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	5 cut(s)	3, 581, 625, 655, 724
Bsp19I	CCATGG	1 cut(s)	764
BspACI	CCGC	1 cut(s)	443
BspANI	GGCC	3 cut(s)	76, 517, 941
BspCNI	CTCAG	4 cut(s)	235, 368, 720, 1044
BspPI	GGATC	3 cut(s)	576, 663, 732
BspT104I	TTCGAA	1 cut(s)	558
BspTI	CTTAAG	1 cut(s)	536
BsrI	ACTGG	2 cut(s)	135, 205
BssECI	CCNNGG	5 cut(s)	30, 71, 711, 764, 942
BssMI	GATC	5 cut(s)	3, 581, 625, 655, 724
BssNAI	GTATAC	1 cut(s)	399
BssT1I	CCWWGG	3 cut(s)	30, 711, 764
Bst1107I	GTATAC	1 cut(s)	399
Bst2UI	CCWGG	2 cut(s)	906, 1078
Bst4CI	ACNGT	3 cut(s)	14, 390, 1048
BstAFI	CTTAAG	1 cut(s)	536
BstBI	TTCGAA	1 cut(s)	558
BstDEI	CTNAG	4 cut(s)	222, 355, 728, 1031
BstDSI	CCRYGG	2 cut(s)	764, 942
BstF5I	GGATG	2 cut(s)	814, 976
BstKTI	GATC	5 cut(s)	6, 584, 628, 658, 727
BstMAI	GTCTC	3 cut(s)	92, 160, 457
BstMBI	GATC	5 cut(s)	3, 581, 625, 655, 724
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 500
BstNI	CCWGG	2 cut(s)	906, 1078
BstPAI	GACNNNNGTC	1 cut(s)	756
BstSCI	CCNGG	3 cut(s)	71, 904, 1076
BstSLI	GKGCMC	1 cut(s)	237
BstV2I	GAAGAC	3 cut(s)	567, 752, 908
BstX2I	RGATCY	3 cut(s)	581, 655, 724
BstYI	RGATCY	3 cut(s)	581, 655, 724
BstZ17I	GTATAC	1 cut(s)	399
Bsu36I	CCTNAGG	2 cut(s)	222, 1031
BsuRI	GGCC	3 cut(s)	76, 517, 941
BtgI	CCRYGG	2 cut(s)	764, 942
BtgZI	GCGATG	1 cut(s)	312
BtsCI	GGATG	2 cut(s)	814, 976
BtsI	GCAGTG	1 cut(s)	664
BtsIMutI	CAGTG	1 cut(s)	664
Cfr13I	GGNCC	2 cut(s)	902, 921
Csp6I	GTAC	2 cut(s)	15, 820
CviAII	CATG	4 cut(s)	25, 368, 765, 878
CviJI	RGCY	7 cut(s)	76, 354, 412, 517, 827, 941, 947
CviKI_1	RGCY	7 cut(s)	76, 354, 412, 517, 827, 941, 947
CviQI	GTAC	2 cut(s)	15, 820
DdeI	CTNAG	4 cut(s)	222, 355, 728, 1031
DpnI	GATC	5 cut(s)	5, 583, 627, 657, 726
DpnII	GATC	5 cut(s)	3, 581, 625, 655, 724
EaeI	YGGCCR	1 cut(s)	939
Eco130I	CCWWGG	3 cut(s)	30, 711, 764
Eco47I	GGWCC	2 cut(s)	902, 921
Eco81I	CCTNAGG	2 cut(s)	222, 1031
EcoO109I	RGGNCCY	1 cut(s)	902
EcoRII	CCWGG	2 cut(s)	904, 1076
EcoT14I	CCWWGG	3 cut(s)	30, 711, 764
ErhI	CCWWGG	3 cut(s)	30, 711, 764
FaeI	CATG	4 cut(s)	28, 371, 768, 881
FalI	AAGNNNNNCTT	6 cut(s)	530, 562, 816, 848, 1000, 1032
FaqI	GGGAC	1 cut(s)	1034
FatI	CATG	4 cut(s)	24, 367, 764, 877
FblI	GTMKAC	2 cut(s)	398, 969
FokI	GGATG	2 cut(s)	821, 963
FspBI	CTAG	1 cut(s)	756
GsaI	CCCAGC	1 cut(s)	655
GsuI	CTGGAG	2 cut(s)	339, 927
HaeIII	GGCC	3 cut(s)	76, 517, 941
HapII	CCGG	3 cut(s)	7, 73, 849
Hin1II	CATG	4 cut(s)	28, 371, 768, 881
HincII	GTYRAC	2 cut(s)	49, 267
HindII	GTYRAC	2 cut(s)	49, 267
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	7 cut(s)	110, 131, 471, 752, 788, 812, 852
HpaI	GTTAAC	1 cut(s)	49
HpaII	CCGG	3 cut(s)	7, 73, 849
HphI	GGTGA	2 cut(s)	47, 635
Hpy166II	GTNNAC	5 cut(s)	38, 49, 267, 399, 970
Hpy188I	TCNGA	5 cut(s)	283, 481, 686, 729, 921
Hpy188III	TCNNGA	9 cut(s)	95, 224, 318, 357, 422, 511, 527, 579, 692
Hpy8I	GTNNAC	5 cut(s)	38, 49, 267, 399, 970
HpyAV	CCTTC	4 cut(s)	28, 87, 156, 766
HpyCH4III	ACNGT	3 cut(s)	14, 390, 1048
HpyCH4IV	ACGT	3 cut(s)	797, 872, 1069
HpyCH4V	TGCA	6 cut(s)	193, 367, 494, 669, 842, 1013
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 500
HpyF3I	CTNAG	4 cut(s)	222, 355, 728, 1031
HpySE526I	ACGT	3 cut(s)	797, 872, 1069
Hsp92II	CATG	4 cut(s)	28, 371, 768, 881
KspAI	GTTAAC	1 cut(s)	49
Kzo9I	GATC	5 cut(s)	3, 581, 625, 655, 724
LweI	GCATC	2 cut(s)	485, 1022
MaeI	CTAG	1 cut(s)	756
MaeII	ACGT	3 cut(s)	797, 872, 1069
MalI	GATC	5 cut(s)	5, 583, 627, 657, 726
MboI	GATC	5 cut(s)	3, 581, 625, 655, 724
MboII	GAAGA	3 cut(s)	567, 752, 908
MfeI	CAATTG	1 cut(s)	375
MflI	RGATCY	3 cut(s)	581, 655, 724
MhlI	GDGCHC	1 cut(s)	237
MlsI	TGGCCA	1 cut(s)	941
MluCI	AATT	9 cut(s)	61, 89, 214, 360, 375, 504, 591, 637, 735
MluNI	TGGCCA	1 cut(s)	941
MlyI	GAGTC	3 cut(s)	104, 746, 861
MmeI	TCCRAC	1 cut(s)	786
Mox20I	TGGCCA	1 cut(s)	941
MscI	TGGCCA	1 cut(s)	941
MseI	TTAA	8 cut(s)	48, 87, 272, 327, 429, 537, 720, 834
Msp20I	TGGCCA	1 cut(s)	941
MspCI	CTTAAG	1 cut(s)	536
MspI	CCGG	3 cut(s)	7, 73, 849
MspR9I	CCNGG	3 cut(s)	73, 906, 1078
MunI	CAATTG	1 cut(s)	375
Mva1269I	GAATGC	1 cut(s)	1081
MvaI	CCWGG	2 cut(s)	906, 1078
MwoI	GCNNNNNNNGC	2 cut(s)	65, 500
NciI	CCSGG	1 cut(s)	73
NcoI	CCATGG	1 cut(s)	764
NdeII	GATC	5 cut(s)	3, 581, 625, 655, 724
NlaIII	CATG	4 cut(s)	28, 371, 768, 881
NspV	TTCGAA	1 cut(s)	558
PctI	GAATGC	1 cut(s)	1081
PfeI	GAWTC	4 cut(s)	131, 471, 788, 812
PfoI	TCCNGGA	1 cut(s)	904
PleI	GAGTC	3 cut(s)	104, 746, 860
PpsI	GAGTC	3 cut(s)	104, 746, 860
PpuMI	RGGWCCY	1 cut(s)	902
PshAI	GACNNNNGTC	1 cut(s)	756
PshBI	ATTAAT	1 cut(s)	429
Psp5II	RGGWCCY	1 cut(s)	902
Psp6I	CCWGG	2 cut(s)	904, 1076
PspFI	CCCAGC	1 cut(s)	651
PspGI	CCWGG	2 cut(s)	904, 1076
PspPI	GGNCC	2 cut(s)	902, 921
PspPPI	RGGWCCY	1 cut(s)	902
PsuI	RGATCY	3 cut(s)	581, 655, 724
RsaI	GTAC	2 cut(s)	16, 821
RsaNI	GTAC	2 cut(s)	15, 820
SaqAI	TTAA	8 cut(s)	48, 87, 272, 327, 429, 537, 720, 834
Sau3AI	GATC	5 cut(s)	3, 581, 625, 655, 724
Sau96I	GGNCC	2 cut(s)	902, 921
SchI	GAGTC	3 cut(s)	104, 746, 861
ScrFI	CCNGG	3 cut(s)	73, 906, 1078
SduI	GDGCHC	1 cut(s)	237
SfaNI	GCATC	2 cut(s)	485, 1022
SfuI	TTCGAA	1 cut(s)	558
SinI	GGWCC	2 cut(s)	902, 921
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
Sse9I	AATT	9 cut(s)	61, 89, 214, 360, 375, 504, 591, 637, 735
SsiI	CCGC	1 cut(s)	443
SspMI	CTAG	1 cut(s)	756
StyD4I	CCNGG	3 cut(s)	71, 904, 1076
StyI	CCWWGG	3 cut(s)	30, 711, 764
TaaI	ACNGT	3 cut(s)	14, 390, 1048
TaiI	ACGT	3 cut(s)	800, 875, 1072
TaqI	TCGA	2 cut(s)	558, 693
TaqII	GACCGA	2 cut(s)	974, 987
TasI	AATT	9 cut(s)	61, 89, 214, 360, 375, 504, 591, 637, 735
TfiI	GAWTC	4 cut(s)	131, 471, 788, 812
Tru1I	TTAA	8 cut(s)	48, 87, 272, 327, 429, 537, 720, 834
Tru9I	TTAA	8 cut(s)	48, 87, 272, 327, 429, 537, 720, 834
TscAI	CASTG	1 cut(s)	671
TspDTI	ATGAA	5 cut(s)	200, 300, 303, 801, 866
TspGWI	ACGGA	2 cut(s)	807, 969
TspRI	CASTG	1 cut(s)	671
Vha464I	CTTAAG	1 cut(s)	536
VpaK11BI	GGWCC	2 cut(s)	902, 921
VspI	ATTAAT	1 cut(s)	429
XapI	RAATTY	4 cut(s)	61, 89, 360, 735
XcmI	CCANNNNNNNNNTGG	1 cut(s)	592
XmiI	GTMKAC	2 cut(s)	398, 969
XspI	CTAG	1 cut(s)	756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.