AT3G29760

NLI interacting factor-like phosphatase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
11589464 .. 11592371
2908 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G29760.3

Sequence Viewer

Length: 1398 bp
ATGAGAGCAATTGAACATTCTGTTGAAGAGGAACCTCTGATTAAGAAAGCTAAATTGATTGATAAGGTCGAAAATTGTCACGAGGTTTCAATGTTGCCGCTAAACGAAACCGTGGTTAAAGGGAATGAAGAAGTTTGTTTGTTAGATATGGAAGATAAGAAAGAGACTTGTGTTGACGTTGAATCTAATGAGAGAAAGAAAGAAGAAGTTTCGGTATCGAGCTTGGTTGATCGAAAACATGTTGTTTCGGGTGACGAAAACGTAGAAAAGAAGGAAGAAGGTTCTGTTATATCGGCTGTTACGAGTAGTGATGAAGTTCCAGTGGTAAAGAACAACGATTCTTGTGTTGTTTCGGGTGATGAAACCGTAGAAAAGAACGAAGAAGGTTGTGTTATATTGGCTGTTACGAGTAGTGATGAAGTTCCAGTGGTAAAGAACAACGATTCTTGTGTTGTTTCGGGTGAGGAAACGATAGAAAAGAATAAAGAAGGTTCTGTTATATCGGCTGTTACGAGTAATGATGAAGTTCCAGTGGTAAAGAACAACGATTCTTGTGTTGTTTCGGGTGATGAAACCGTAGAAAAGAACGAAGAAGGTTGTGTTATATTGGCTGTTACGAGTAGTGATGAAGTTCCAGTGGTAAAGAACAACGATTCTTGTGTTGTTTCGGGTGAGGAAACGATAGAAAAGAATAAAGAAGGTTCTGTTATATCGGCTGTTACGAGTAATGATGAAGTTCCAGTGGTAAAGAACAACGATTCTTGTGTTGTTTCGGGTGATGAAACCATAGAAAAGAATGAAGAAGGTTCGGTTATATCGGCTGTTATGAGTAGTGATGAAGTTTCAGTGGTAGAGAACAACGATTCTTGTGTTGTTTTTGGTGGAATCAGCGGGGTAAATTCATTGGTGTTAAGGAAAAAACTTCTTGTTCTTGATCTTAATGGGTTGCTTGCTGATATAGTTACTCCTCTCAAGGATGTTCCAGCGGATATTAATATTGGAAGAAGAGCAATTTTCAAGAGACCTTTTTGTGATGAGTTTTTGAGATTCTGCTTTGACAAGTTTGAAGTTGGTATCTGGTCATCGAGAAAACAGAATAATGTTGTAAGAATCACTGAGTTCTTGCTTGGTGATTTGAAGAGTAAGCTGTTGTTTTGTTGGGACATGTCTTATTGTGCTACAACCAGTGTTGGTTCGCTTGAAAATAGGTACAAATATGTGGTGTTCAAGGATCTAAACCGGCTTTGGGAGAAACACGATCCAAGACTTCCTTGGAAAATGGGTGATTACAACGAAACCAACACGGTTTTGCTAGACGATTCTCCTTACAAGGCTTTGCTTAACCCGCAATATTCCCTCATTCATACAATCATCAGAACAAGACAGATACATCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

465

Amino Acids

51.39

Weight (kDa)

4.62

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 307 - 488 1.2e-17 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 98, 891, 986, 1346
AclWI GGATC 2 cut(s) 1239, 1253
AcsI RAATTY 1 cut(s) 898
AfaI GTAC 1 cut(s) 1211
AfiI CCNNNNNNNGG 1 cut(s) 1246
AflIII ACRYGT 2 cut(s) 238, 1164
AgsI TTSAA 9 cut(s) 14, 26, 90, 182, 1018, 1067, 1138, 1202, 1228
AluBI AGCT 3 cut(s) 50, 222, 1147
AluI AGCT 3 cut(s) 50, 222, 1147
Alw26I GTCTC 2 cut(s) 158, 1015
AlwI GGATC 2 cut(s) 1239, 1253
ApoI RAATTY 1 cut(s) 898
AseI ATTAAT 1 cut(s) 993
AsuHPI GGTGA 8 cut(s) 263, 368, 473, 578, 683, 788, 1142, 1295
BauI CACGAG 1 cut(s) 80
BcoDI GTCTC 2 cut(s) 158, 1015
BfaI CTAG 1 cut(s) 1313
BisI GCNGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 99
BmiI GGNNCC 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 956
BsaI GGTCTC 1 cut(s) 1015
BsaJI CCNNGG 2 cut(s) 111, 1271
Bsc4I CCNNNNNNNGG 1 cut(s) 1246
Bse118I RCCGGY 1 cut(s) 1239
Bse1I ACTGG 6 cut(s) 320, 425, 530, 635, 740, 1185
BseDI CCNNGG 2 cut(s) 111, 1271
BseGI GGATG 1 cut(s) 982
BseLI CCNNNNNNNGG 1 cut(s) 1246
BseMII CTCAG 1 cut(s) 1107
BseNI ACTGG 6 cut(s) 320, 425, 530, 635, 740, 1185
BseRI GAGGAG 1 cut(s) 957
BsiSI CCGG 1 cut(s) 1240
BslFI GGGAC 1 cut(s) 1175
BslI CCNNNNNNNGG 1 cut(s) 1246
BsmAI GTCTC 2 cut(s) 158, 1015
BsmFI GGGAC 1 cut(s) 1175
Bso31I GGTCTC 1 cut(s) 1015
Bsp143I GATC 4 cut(s) 229, 934, 1231, 1258
BspACI CCGC 4 cut(s) 98, 891, 986, 1346
BspCNI CTCAG 1 cut(s) 1108
BspLI GGNNCC 1 cut(s) 33
BspPI GGATC 2 cut(s) 1239, 1253
BspQI GCTCTTC 1 cut(s) 1000
BspTNI GGTCTC 1 cut(s) 1015
BsrFI RCCGGY 1 cut(s) 1239
BsrI ACTGG 6 cut(s) 320, 425, 530, 635, 740, 1185
BssAI RCCGGY 1 cut(s) 1239
BssECI CCNNGG 2 cut(s) 111, 1271
BssMI GATC 4 cut(s) 229, 934, 1231, 1258
BssSI CACGAG 1 cut(s) 80
BssT1I CCWWGG 1 cut(s) 1271
Bst2BI CACGAG 1 cut(s) 80
Bst4CI ACNGT 4 cut(s) 112, 367, 577, 1306
Bst6I CTCTTC 3 cut(s) 21, 1000, 1133
BstC8I GCNNGC 1 cut(s) 951
BstDEI CTNAG 1 cut(s) 1116
BstDSI CCRYGG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 982
BstKTI GATC 4 cut(s) 232, 937, 1234, 1261
BstMAI GTCTC 2 cut(s) 158, 1015
BstMBI GATC 4 cut(s) 229, 934, 1231, 1258
BstMWI GCNNNNNNNGC 1 cut(s) 1345
BstNSI RCATGY 2 cut(s) 242, 1168
BstX2I RGATCY 1 cut(s) 1231
BstYI RGATCY 1 cut(s) 1231
BtgI CCRYGG 1 cut(s) 111
BtsCI GGATG 1 cut(s) 982
BtsIMutI CAGTG 8 cut(s) 327, 432, 537, 642, 747, 852, 1113, 1192
Cac8I GCNNGC 1 cut(s) 951
Cfr10I RCCGGY 1 cut(s) 1239
Csp6I GTAC 1 cut(s) 1210
CviAII CATG 2 cut(s) 239, 1165
CviQI GTAC 1 cut(s) 1210
DdeI CTNAG 1 cut(s) 1116
DpnI GATC 4 cut(s) 231, 936, 1233, 1260
DpnII GATC 4 cut(s) 229, 934, 1231, 1258
Eam1104I CTCTTC 3 cut(s) 21, 1000, 1133
EarI CTCTTC 3 cut(s) 21, 1000, 1133
Eco130I CCWWGG 1 cut(s) 1271
Eco31I GGTCTC 1 cut(s) 1015
EcoT14I CCWWGG 1 cut(s) 1271
ErhI CCWWGG 1 cut(s) 1271
FaeI CATG 2 cut(s) 242, 1168
FalI AAGNNNNNCTT 2 cut(s) 1255, 1287
FaqI GGGAC 1 cut(s) 1175
FatI CATG 2 cut(s) 238, 1164
FauI CCCGC 2 cut(s) 884, 1353
Fnu4HI GCNGC 1 cut(s) 98
FokI GGATG 1 cut(s) 989
Fsp4HI GCNGC 1 cut(s) 98
FspBI CTAG 1 cut(s) 1313
GluI GCNGC 1 cut(s) 98
HapII CCGG 1 cut(s) 1240
Hin1II CATG 2 cut(s) 242, 1168
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HpaII CCGG 1 cut(s) 1240
HphI GGTGA 8 cut(s) 263, 368, 473, 578, 683, 788, 1142, 1295
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 2 cut(s) 39, 1376
Hpy188III TCNNGA 4 cut(s) 80, 932, 1018, 1086
Hpy8I GTNNAC 1 cut(s) 175
HpyAV CCTTC 7 cut(s) 265, 272, 377, 482, 587, 692, 797
HpyCH4III ACNGT 4 cut(s) 112, 367, 577, 1306
HpyCH4IV ACGT 2 cut(s) 177, 261
HpyF10VI GCNNNNNNNGC 1 cut(s) 1345
HpyF3I CTNAG 1 cut(s) 1116
HpySE526I ACGT 2 cut(s) 177, 261
Hsp92II CATG 2 cut(s) 242, 1168
Kzo9I GATC 4 cut(s) 229, 934, 1231, 1258
LguI GCTCTTC 1 cut(s) 1000
LpnPI CCDG 9 cut(s) 333, 438, 543, 648, 753, 996, 1063, 1198, 1253
MaeI CTAG 1 cut(s) 1313
MaeII ACGT 2 cut(s) 177, 261
MaeIII GTNAC 8 cut(s) 77, 251, 298, 403, 508, 613, 718, 961
MalI GATC 4 cut(s) 231, 936, 1233, 1260
MboI GATC 4 cut(s) 229, 934, 1231, 1258
MfeI CAATTG 1 cut(s) 9
MflI RGATCY 1 cut(s) 1231
MluCI AATT 5 cut(s) 9, 53, 73, 898, 1011
MnlI CCTC 7 cut(s) 22, 45, 76, 457, 667, 978, 1367
MseI TTAA 6 cut(s) 42, 117, 911, 939, 993, 1341
MspA1I CMGCKG 2 cut(s) 891, 986
MspI CCGG 1 cut(s) 1240
MunI CAATTG 1 cut(s) 9
MwoI GCNNNNNNNGC 1 cut(s) 1345
NdeII GATC 4 cut(s) 229, 934, 1231, 1258
NlaIII CATG 2 cut(s) 242, 1168
NlaIV GGNNCC 1 cut(s) 33
NmuCI GTSAC 2 cut(s) 77, 251
NspI RCATGY 2 cut(s) 242, 1168
PciI ACATGT 2 cut(s) 238, 1164
PciSI GCTCTTC 1 cut(s) 1000
PcsI WCGNNNNNNNCGW 3 cut(s) 299, 509, 719
PkrI GCNGC 1 cut(s) 99
PscI ACATGT 2 cut(s) 238, 1164
PshBI ATTAAT 1 cut(s) 993
PspN4I GGNNCC 1 cut(s) 33
PsuI RGATCY 1 cut(s) 1231
RsaI GTAC 1 cut(s) 1211
RsaNI GTAC 1 cut(s) 1210
SapI GCTCTTC 1 cut(s) 1000
SaqAI TTAA 6 cut(s) 42, 117, 911, 939, 993, 1341
SatI GCNGC 1 cut(s) 98
Sau3AI GATC 4 cut(s) 229, 934, 1231, 1258
SmlI CTYRAG 1 cut(s) 971
SmoI CTYRAG 1 cut(s) 971
Sse9I AATT 5 cut(s) 9, 53, 73, 898, 1011
SsiI CCGC 4 cut(s) 98, 891, 986, 1346
SspI AATATT 2 cut(s) 997, 1352
SspMI CTAG 1 cut(s) 1313
StyI CCWWGG 1 cut(s) 1271
TaaI ACNGT 4 cut(s) 112, 367, 577, 1306
TaiI ACGT 2 cut(s) 180, 264
TaqI TCGA 4 cut(s) 69, 218, 232, 1085
TasI AATT 5 cut(s) 9, 53, 73, 898, 1011
TauI GCSGC 1 cut(s) 100
Tru1I TTAA 6 cut(s) 42, 117, 911, 939, 993, 1341
Tru9I TTAA 6 cut(s) 42, 117, 911, 939, 993, 1341
TscAI CASTG 8 cut(s) 327, 432, 537, 642, 747, 852, 1120, 1192
TseFI GTSAC 2 cut(s) 77, 251
Tsp45I GTSAC 2 cut(s) 77, 251
TspRI CASTG 8 cut(s) 327, 432, 537, 642, 747, 852, 1120, 1192
VspI ATTAAT 1 cut(s) 993
XapI RAATTY 1 cut(s) 898
XceI RCATGY 2 cut(s) 242, 1168
XcmI CCANNNNNNNNNTGG 1 cut(s) 1269
XspI CTAG 1 cut(s) 1313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.