pycom06g18090

NLI interacting factor-like phosphatase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
21971301 .. 21974267
2967 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g18090.2

Sequence Viewer

Length: 2106 bp
ATGTCACAACCACCTATGGAGGGAAGTAGCACAGATGAAAACTCAAAAATTGCTGAACCTATTGAAGATTTGAGTTGCTCAATGAAAAAGAAGAAAAGTTGTAAAAGTAAAACCCGTGAGGGTAATGATGAAAATTGTGGTAATGACGAAAGTTGTGAGCTTTCTGTTGGTAGTTCTGTAGTGGAAAGTGTTATGCCAGGACTAGATCCGTCTCAACAGCCTCCAGTCTCAGAATCATTGGAACAAAAGCTCAAATTGACCCAACCACTTATGGAAGGAATTAGTACGAAAATTAATTCAGAAAATTCTGAACCTATTGAAGATCTGAGTTCCTCAAGCAAAAAGCAGAAAAAGCCTCGGTGGAAAAAGTCTAATGATGAAAGTTGTGGTAATGACAAAAGTGGTGAGCTTTCAGTTGGTATTTCTTTAGTGGAAAGTATTATGCCAGGAATAGCTCAGCAGCCTCCAGAATCAGAATTCTCAGATGAAAAAGTAGATTTGCCACAAGCATTTGTGGAGGGAAATTGCACGACAGTAAGCTCAGAAGGTCCCAAGTCGCCTACTGTGGACTTGAATTGGTCACAAGAACAGAAGAATAAGAATCGAAAGAGAAGGCATAAAACCAATGAGTGTATTGATGAAAGATGTGATCTTTCTATTGATGCTTCTTTAGTAGGAAATACTATGCCAGGAGTAGATCTGACTGTACGGCCTCCAGTTGCAGTGTTCTCGGAACAAGATCTAGAAGTGGAACAACCACTTGTGGAGGGAATTAGACAGAGAACCAATTCTGAGAGTACCAAACCCTTTGAAGTTTTGAGTTGCTCACAAAAGAGAGAGTGTCGGAAGAAAAGGCTTGAAATGGGTGGGAGTAATGATACAAGTTGTGATCCTTCTGTTGGTACTTTAGTGGAGAAGATTATTCGAGGAGCAGATCCATCTCCACAGCCTCCGCTTACAATAGTATCAGACCCAGAGCTAGATGTGTCTCTATTACTTTTGGAGGAAAAGACTTTACAGGAGCAAAATGAGGACAAGGATCAGAACAAGAGCTGTAATGCCTCAGGAAATAACGACACTAACCACCAAGTTTGCACTGGCTTTCCTGGCCAAGTTGTAAACGATGTTACTGATATAAAAGAATATTCTCCTATCCTCAAGGAACAAAATGGTCTACAAAAGAGTGCAGATGCTGGTTCAAGGAATAAAATTGACATGGAGGTTAGTGGCACTAAATCATATTGTTCAGATGCTTTTCCTGAATCTGACAATATTACTGATACAGAACGCACGGAAACCAAAATTGAAGTTCCTTCCTTGCCATCTTCGTCCGTAAAAGTTGATGTTGATTTGGCTGTTGTCGCGAAGGAGGGCAGTCGTTCACAGATATCAAACTCTGCTGTTGAAAGACCTCTTGTTAGTGTTTCTAAGAAAAAGCTTCTCATTCTTGATGTAAACGGCCTTCTTGCTGATATTGTTCAATTGGTTTCTGAGCAATATAAATTATATAGACCAGACACAACAATATCGAGGAAATCAGTTTTTAAGAGGCCGTGTTGTGATTCTTTTCTACAATTCTGCTTTGACAATTTTAACGTGGGTGTTTGGTCGTCAAGAACCGAGAAGAACGTGGAAATGGTGGTAGATTATCTTTGGGGAGATTCCAGAAAGAAATTGCTTTTTTGCTGGAATCAATCCCACTGTACTACTACGAAGTTCAATACTCTTGACAACGAGGAAAAACCCCTTGTTTTGAAAGAACTTAAAAAGTTATGGGAGAAGCATGATCCTGATCTTCCTTGGGCGAGGGGAGAGTACAACGAGACAAACACATTATTAGTGGATGATTCACCATACAAAGCTTTATGCAATCCAGAGAACACAGCAATATTTCCCTACCCCTTTCGATTCAAGGATCGAAGAGATAGATCACTAGGGGAAGGAGGCGATATTCGTTATTATCTGGAAAGATTAGTTGAGGCTCAAAATGTTCAAGAATACGTGAAGCAGCATCCATTTGGTCAACGCCCCATAACAACAAAAAGTCGTTCATGGATATTTTATCGTCAAGTTATAGAGGATCAAGCAGTGTCACCCAAAAATTGA

Protein Analysis

702

Amino Acids

78.47

Weight (kDa)

5.04

Isoelectric Point (pI)

54.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1174
AccII CGCG 1 cut(s) 1364
AciI CCGC 1 cut(s) 953
AclWI GGATC 7 cut(s) 200, 884, 929, 1047, 1781, 1923, 2088
AcoI YGGCCR 1 cut(s) 1108
AcsI RAATTY 2 cut(s) 304, 476
AfaI GTAC 6 cut(s) 286, 708, 799, 904, 1705, 1817
AfiI CCNNNNNNNGG 2 cut(s) 20, 899
AjnI CCWGG 4 cut(s) 196, 445, 688, 1105
AluBI AGCT 9 cut(s) 160, 250, 409, 455, 540, 979, 1053, 1438, 1862
AluI AGCT 9 cut(s) 160, 250, 409, 455, 540, 979, 1053, 1438, 1862
Alw26I GTCTC 4 cut(s) 216, 232, 993, 1817
AlwI GGATC 7 cut(s) 200, 884, 929, 1047, 1781, 1923, 2088
AlwNI CAGNNNCTG 1 cut(s) 1193
AoxI GGCC 4 cut(s) 710, 1108, 1459, 1550
ApeKI GCWGC 2 cut(s) 460, 2008
ApoI RAATTY 2 cut(s) 304, 476
AseI ATTAAT 1 cut(s) 294
Asp700I GAANNNNTTC 1 cut(s) 787
AspS9I GGNCC 1 cut(s) 548
AsuHPI GGTGA 3 cut(s) 416, 1842, 2085
AvaII GGWCC 1 cut(s) 548
AxyI CCTNAGG 1 cut(s) 1063
BaeI ACNNNNGTAYC 4 cut(s) 894, 927, 948, 981
BalI TGGCCA 1 cut(s) 1110
BarI GAAGNNNNNNTAC 2 cut(s) 1446, 1478
BbvI GCAGC 2 cut(s) 472, 2020
BccI CCATC 2 cut(s) 946, 1330
BceAI ACGGC 3 cut(s) 725, 1474, 1537
BcgI CGANNNNNNTGC 2 cut(s) 711, 745
BciT130I CCWGG 4 cut(s) 198, 447, 690, 1107
BcoDI GTCTC 4 cut(s) 216, 232, 993, 1817
BfaI CTAG 4 cut(s) 203, 743, 980, 1934
BfmI CTRYAG 1 cut(s) 177
BglII AGATCT 3 cut(s) 322, 697, 739
BisI GCNGC 2 cut(s) 461, 2009
BlpI GCTNAGC 1 cut(s) 456
BlsI GCNGC 2 cut(s) 462, 2010
Bme1390I CCNGG 4 cut(s) 198, 447, 690, 1107
Bme18I GGWCC 1 cut(s) 548
BmgT120I GGNCC 1 cut(s) 548
BmiI GGNNCC 1 cut(s) 550
BmrFI CCNGG 4 cut(s) 198, 447, 690, 1107
BmsI GCATC 4 cut(s) 652, 1180, 1240, 2020
BpmI CTGGAG 3 cut(s) 207, 450, 699
Bpu1102I GCTNAGC 1 cut(s) 456
BpuEI CTTGAG 2 cut(s) 319, 1142
BsaAI YACGTR 1 cut(s) 2002
BsaBI GATNNNNATC 1 cut(s) 1791
BsaJI CCNNGG 2 cut(s) 356, 1799
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 899
Bse1I ACTGG 3 cut(s) 224, 716, 1102
Bse21I CCTNAGG 1 cut(s) 1063
Bse8I GATNNNNATC 1 cut(s) 1791
BseBI CCWGG 4 cut(s) 198, 447, 690, 1107
BseDI CCNNGG 2 cut(s) 356, 1799
BseGI GGATG 2 cut(s) 1849, 2011
BseJI GATNNNNATC 1 cut(s) 1791
BseLI CCNNNNNNNGG 2 cut(s) 20, 899
BseMII CTCAG 8 cut(s) 243, 317, 470, 495, 555, 783, 1077, 1482
BseNI ACTGG 3 cut(s) 224, 716, 1102
BseRI GAGGAG 1 cut(s) 942
BseXI GCAGC 2 cut(s) 472, 2020
BsgI GTGCAG 1 cut(s) 1206
Bsh1236I CGCG 1 cut(s) 1364
BshFI GGCC 4 cut(s) 712, 1110, 1461, 1552
BslFI GGGAC 1 cut(s) 534
BslI CCNNNNNNNGG 2 cut(s) 20, 899
BsmAI GTCTC 4 cut(s) 216, 232, 993, 1817
BsmBI CGTCTC 1 cut(s) 216
BsmFI GGGAC 1 cut(s) 534
BsnI GGCC 4 cut(s) 712, 1110, 1461, 1552
Bsp1720I GCTNAGC 1 cut(s) 456
Bsp68I TCGCGA 1 cut(s) 1364
BspACI CCGC 1 cut(s) 953
BspANI GGCC 4 cut(s) 712, 1110, 1461, 1552
BspCNI CTCAG 8 cut(s) 242, 318, 469, 494, 554, 784, 1076, 1483
BspFNI CGCG 1 cut(s) 1364
BspLI GGNNCC 1 cut(s) 550
BspPI GGATC 7 cut(s) 200, 884, 929, 1047, 1781, 1923, 2088
BsrI ACTGG 3 cut(s) 224, 716, 1102
BssECI CCNNGG 2 cut(s) 356, 1799
BssT1I CCWWGG 1 cut(s) 1799
Bst2UI CCWGG 4 cut(s) 198, 447, 690, 1107
Bst4CI ACNGT 4 cut(s) 535, 565, 706, 1703
Bst6I CTCTTC 1 cut(s) 1915
BstBAI YACGTR 1 cut(s) 2002
BstDEI CTNAG 9 cut(s) 229, 326, 456, 481, 541, 792, 1063, 1428, 1491
BstF5I GGATG 2 cut(s) 1849, 2011
BstFNI CGCG 1 cut(s) 1364
BstMAI GTCTC 4 cut(s) 216, 232, 993, 1817
BstMWI GCNNNNNNNGC 3 cut(s) 352, 1107, 1361
BstNI CCWGG 4 cut(s) 198, 447, 690, 1107
BstSCI CCNGG 4 cut(s) 196, 445, 688, 1105
BstSFI CTRYAG 1 cut(s) 177
BstUI CGCG 1 cut(s) 1364
BstV1I GCAGC 2 cut(s) 472, 2020
BstX2I RGATCY 5 cut(s) 205, 322, 697, 739, 934
BstYI RGATCY 5 cut(s) 205, 322, 697, 739, 934
Bsu36I CCTNAGG 1 cut(s) 1063
BsuRI GGCC 4 cut(s) 712, 1110, 1461, 1552
BtsCI GGATG 2 cut(s) 1849, 2011
BtsI GCAGTG 2 cut(s) 729, 2094
BtsIMutI CAGTG 4 cut(s) 729, 1095, 1699, 2094
BtuMI TCGCGA 1 cut(s) 1364
CaiI CAGNNNCTG 1 cut(s) 1193
Cfr13I GGNCC 1 cut(s) 548
Csp6I GTAC 6 cut(s) 285, 707, 798, 903, 1704, 1816
CspCI CAANNNNNGTGG 2 cut(s) 1073, 1108
CviAII CATG 3 cut(s) 1216, 1784, 2052
CviQI GTAC 6 cut(s) 285, 707, 798, 903, 1704, 1816
DdeI CTNAG 9 cut(s) 229, 326, 456, 481, 541, 792, 1063, 1428, 1491
EaeI YGGCCR 1 cut(s) 1108
Eam1104I CTCTTC 1 cut(s) 1915
EarI CTCTTC 1 cut(s) 1915
Eco130I CCWWGG 1 cut(s) 1799
Eco32I GATATC 1 cut(s) 1389
Eco47I GGWCC 1 cut(s) 548
Eco81I CCTNAGG 1 cut(s) 1063
EcoO109I RGGNCCY 1 cut(s) 548
EcoRI GAATTC 1 cut(s) 476
EcoRII CCWGG 4 cut(s) 196, 445, 688, 1105
EcoRV GATATC 1 cut(s) 1389
EcoT14I CCWWGG 1 cut(s) 1799
ErhI CCWWGG 1 cut(s) 1799
Esp3I CGTCTC 1 cut(s) 216
FaeI CATG 3 cut(s) 1219, 1787, 2055
FaqI GGGAC 1 cut(s) 534
FatI CATG 3 cut(s) 1215, 1783, 2051
FblI GTMKAC 1 cut(s) 1174
Fnu4HI GCNGC 2 cut(s) 461, 2009
FokI GGATG 2 cut(s) 1856, 1998
Fsp4HI GCNGC 2 cut(s) 461, 2009
FspBI CTAG 4 cut(s) 203, 743, 980, 1934
GluI GCNGC 2 cut(s) 461, 2009
GsuI CTGGAG 3 cut(s) 207, 450, 699
HaeIII GGCC 4 cut(s) 712, 1110, 1461, 1552
Hin1II CATG 3 cut(s) 1219, 1787, 2055
HincII GTYRAC 1 cut(s) 2024
HindII GTYRAC 1 cut(s) 2024
HindIII AAGCTT 2 cut(s) 1436, 1860
HinfI GANTC 9 cut(s) 233, 470, 601, 1262, 1562, 1661, 1690, 1847, 1908
HphI GGTGA 3 cut(s) 416, 1842, 2085
Hpy166II GTNNAC 6 cut(s) 568, 1120, 1175, 1382, 1456, 2024
Hpy8I GTNNAC 6 cut(s) 568, 1120, 1175, 1382, 1456, 2024
HpyAV CCTTC 8 cut(s) 269, 539, 606, 903, 1323, 1360, 1472, 1934
HpyCH4III ACNGT 4 cut(s) 535, 565, 706, 1703
HpyCH4IV ACGT 3 cut(s) 1596, 1629, 2001
HpyCH4V TGCA 5 cut(s) 528, 722, 1095, 1187, 1869
HpyF10VI GCNNNNNNNGC 3 cut(s) 352, 1107, 1361
HpyF3I CTNAG 9 cut(s) 229, 326, 456, 481, 541, 792, 1063, 1428, 1491
HpySE526I ACGT 3 cut(s) 1596, 1629, 2001
Hsp92II CATG 3 cut(s) 1219, 1787, 2055
LmnI GCTCC 2 cut(s) 929, 1021
Lsp1109I GCAGC 2 cut(s) 472, 2020
LweI GCATC 4 cut(s) 652, 1180, 1240, 2020
MaeI CTAG 4 cut(s) 203, 743, 980, 1934
MaeII ACGT 3 cut(s) 1596, 1629, 2001
MaeIII GTNAC 4 cut(s) 3, 579, 1126, 2091
MfeI CAATTG 1 cut(s) 1481
MflI RGATCY 5 cut(s) 205, 322, 697, 739, 934
MlsI TGGCCA 1 cut(s) 1110
MluNI TGGCCA 1 cut(s) 1110
MmeI TCCRAC 1 cut(s) 824
Mox20I TGGCCA 1 cut(s) 1110
MroXI GAANNNNTTC 1 cut(s) 787
MscI TGGCCA 1 cut(s) 1110
MseI TTAA 4 cut(s) 294, 1545, 1593, 1764
Msp20I TGGCCA 1 cut(s) 1110
MspR9I CCNGG 4 cut(s) 198, 447, 690, 1107
MunI CAATTG 1 cut(s) 1481
MvaI CCWGG 4 cut(s) 198, 447, 690, 1107
MvnI CGCG 1 cut(s) 1364
MwoI GCNNNNNNNGC 3 cut(s) 352, 1107, 1361
NlaIII CATG 3 cut(s) 1219, 1787, 2055
NlaIV GGNNCC 1 cut(s) 550
NmuCI GTSAC 3 cut(s) 3, 579, 2091
NruI TCGCGA 1 cut(s) 1364
PdmI GAANNNNTTC 1 cut(s) 787
PfeI GAWTC 9 cut(s) 233, 470, 601, 1262, 1562, 1661, 1690, 1847, 1908
PkrI GCNGC 2 cut(s) 462, 2010
Ppu21I YACGTR 1 cut(s) 2002
PpuMI RGGWCCY 1 cut(s) 548
PshBI ATTAAT 1 cut(s) 294
Psp5II RGGWCCY 1 cut(s) 548
Psp6I CCWGG 4 cut(s) 196, 445, 688, 1105
PspGI CCWGG 4 cut(s) 196, 445, 688, 1105
PspN4I GGNNCC 1 cut(s) 550
PspPI GGNCC 1 cut(s) 548
PspPPI RGGWCCY 1 cut(s) 548
PstNI CAGNNNCTG 1 cut(s) 1193
PsuI RGATCY 5 cut(s) 205, 322, 697, 739, 934
RruI TCGCGA 1 cut(s) 1364
RsaI GTAC 6 cut(s) 286, 708, 799, 904, 1705, 1817
RsaNI GTAC 6 cut(s) 285, 707, 798, 903, 1704, 1816
SaqAI TTAA 4 cut(s) 294, 1545, 1593, 1764
SatI GCNGC 2 cut(s) 461, 2009
Sau96I GGNCC 1 cut(s) 548
ScrFI CCNGG 4 cut(s) 198, 447, 690, 1107
SfaNI GCATC 4 cut(s) 652, 1180, 1240, 2020
SfcI CTRYAG 1 cut(s) 177
SinI GGWCC 1 cut(s) 548
SmlI CTYRAG 2 cut(s) 334, 1157
SmoI CTYRAG 2 cut(s) 334, 1157
SsiI CCGC 1 cut(s) 953
SspI AATATT 3 cut(s) 1145, 1273, 1890
SspMI CTAG 4 cut(s) 203, 743, 980, 1934
StyD4I CCNGG 4 cut(s) 196, 445, 688, 1105
StyI CCWWGG 1 cut(s) 1799
TaaI ACNGT 4 cut(s) 535, 565, 706, 1703
TaiI ACGT 3 cut(s) 1599, 1632, 2004
TaqI TCGA 5 cut(s) 604, 925, 1529, 1906, 1918
TatI WGTACW 2 cut(s) 1703, 1815
TfiI GAWTC 9 cut(s) 233, 470, 601, 1262, 1562, 1661, 1690, 1847, 1908
Tru1I TTAA 4 cut(s) 294, 1545, 1593, 1764
Tru9I TTAA 4 cut(s) 294, 1545, 1593, 1764
TscAI CASTG 4 cut(s) 729, 1102, 1706, 2094
TseFI GTSAC 3 cut(s) 3, 579, 2091
TseI GCWGC 2 cut(s) 460, 2008
Tsp45I GTSAC 3 cut(s) 3, 579, 2091
TspDTI ATGAA 7 cut(s) 51, 98, 144, 393, 501, 654, 2040
TspGWI ACGGA 3 cut(s) 198, 1307, 1321
TspRI CASTG 4 cut(s) 729, 1102, 1706, 2094
VpaK11BI GGWCC 1 cut(s) 548
VspI ATTAAT 1 cut(s) 294
XapI RAATTY 2 cut(s) 304, 476
XbaI TCTAGA 1 cut(s) 742
XcmI CCANNNNNNNNNTGG 1 cut(s) 1094
XmiI GTMKAC 1 cut(s) 1174
XmnI GAANNNNTTC 1 cut(s) 787
XspI CTAG 4 cut(s) 203, 743, 980, 1934
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.