Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000879

Physical Location & Seq

Genomic Coordinates Forward (+)

81504642 .. 81509244

Gene Structure 4603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG582300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGATAAGGCATACTAGTTCCTTCTCCATGACCAAGGGTGAAGTGCAAGTTAACCTCTTGGCAAATTCAGCACCCCGTCCGTCCTTTGTTAAAATTCCGGAGACAGGTATGGACACTGCCAAAAATATTTCAGAATCAAGTCAAGTGTTGAAAAAGAGAACAAGAAGGAGACATAGGAGGAAACCGAATCTAATGCAAAATACTGGCGTAGTTCATAATTTGCCTCAGGAACATGGGCAGGTTGACACTAAATATATAAAAAGATTGTCAACTTTAAGTTTATCAGATGAAAGAGGTAGCGATGTATTAGTTATTTCATCTGGAGCGGTTAAAACTAATTGTGAAGAGGACATCAGATCAGGAATTTCACATGGCTCAATTGTGAGAAAACCGTTTAGGTATACAGGGAAAAAACTTCTTATTCTTGACATCAATGGACTTATTGCGGATATAGTCTCTCCTCCTCCAAAGGGATTTGCATCTGACATAAGGATTGCAGGACGAGCAATTTTCAAGAGGCCATACTATCTTGATTTTCTTAAGTTCTGCTTTGAGCGTTTCGAAGTGGGTGTGTGGTCTTCAAGATCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

197

Amino Acids

22.2

Weight (kDa)

10.25

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29760 AT3G29760 AT3G29760 AT3G29760 AT3G29760
fragaria_vesca	FvH4_5g13671 FvH4_5g13671 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700
malus_domestica	MD06G1203100.v1.1 MD09G1068500.v1.1 MD14G1213700.v1.1 MD17G1061400.v1.1
prunus_persica	Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.5G206600_v2.0.a1
pyrus_communis	pycom06g18090 pycom12433g00100 pycom14g17710 pycom17g06130
rosa_chinensis	RchiOBHm_Chr1g0330571 RchiOBHm_Chr1g0330791 RchiOBHm_Chr1g0330841 RchiOBHm_Chr2g0165581 RchiOBHm_Chr7g0183261 RchiOBHm_Chr7g0183271
rosa_laevigata	RLG00000005061 RLG00000021541
rosa_multiflora	Rmu_sc0000815.1_g000003 Rmu_sc0005425.1_g000020 Rmu_sc0008744.1_g000011 Rmu_sc0014529.1_g000002 Rmu_sc0018426.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085710 Rroxscaffold_3G00270610
rosa_rugosa	Rorug02G0516200 Rorug05G0496600 Rorug05G0496600 Rorug05G0496600 Rorug06G0455700
rosa_samantha	Rh1AG107500 Rh1AG107600 Rh1AG111800 Rh1CG103400 Rh1CG106100 Rh1CG107100 Rh1DG113000 Rh2AG582300 Rh2BG594500 Rh2CG564400 Rh2DG604400 Rh7AG057700 Rh7BG057500 Rh7CG059100 Rh7DG057300
rosa_wichuraiana	Rw0G004370 Rw0G016070 Rw1G009080 Rw2G048580 Rw7G004720 Rw7G004730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	229
AccBSI	CCGCTC	1 cut(s)	326
AccI	GTMKAC	1 cut(s)	401
AccIII	TCCGGA	1 cut(s)	97
AciI	CCGC	2 cut(s)	326, 446
AclWI	GGATC	1 cut(s)	579
AcsI	RAATTY	3 cut(s)	64, 93, 363
AfiI	CCNNNNNNNGG	2 cut(s)	104, 470
AflII	CTTAAG	1 cut(s)	539
AgsI	TTSAA	3 cut(s)	151, 514, 582
AhlI	ACTAGT	1 cut(s)	14
Alw26I	GTCTC	3 cut(s)	95, 163, 460
AlwI	GGATC	1 cut(s)	579
Aor13HI	TCCGGA	1 cut(s)	97
AoxI	GGCC	1 cut(s)	518
ApoI	RAATTY	3 cut(s)	64, 93, 363
AsuHPI	GGTGA	1 cut(s)	50
AsuII	TTCGAA	1 cut(s)	561
AxyI	CCTNAGG	1 cut(s)	225
BbsI	GAAGAC	1 cut(s)	570
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BcoDI	GTCTC	3 cut(s)	95, 163, 460
BcuI	ACTAGT	1 cut(s)	14
BfaI	CTAG	1 cut(s)	15
BfrI	CTTAAG	1 cut(s)	539
BfuAI	ACCTGC	1 cut(s)	229
BmsI	GCATC	1 cut(s)	488
BpiI	GAAGAC	1 cut(s)	570
BpmI	CTGGAG	1 cut(s)	342
Bpu14I	TTCGAA	1 cut(s)	561
BsaBI	GATNNNNATC	1 cut(s)	478
BsaJI	CCNNGG	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 470
Bse1I	ACTGG	1 cut(s)	208
Bse21I	CCTNAGG	1 cut(s)	225
Bse8I	GATNNNNATC	1 cut(s)	478
BseAI	TCCGGA	1 cut(s)	97
BseDI	CCNNGG	1 cut(s)	33
BseJI	GATNNNNATC	1 cut(s)	478
BseLI	CCNNNNNNNGG	2 cut(s)	104, 470
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	1 cut(s)	208
BseRI	GAGGAG	2 cut(s)	450, 453
BshFI	GGCC	1 cut(s)	520
BsiSI	CCGG	1 cut(s)	98
BslI	CCNNNNNNNGG	2 cut(s)	104, 470
BsmAI	GTCTC	3 cut(s)	95, 163, 460
BsnI	GGCC	1 cut(s)	520
Bsp119I	TTCGAA	1 cut(s)	561
Bsp13I	TCCGGA	1 cut(s)	97
Bsp143I	GATC	2 cut(s)	356, 584
BspACI	CCGC	2 cut(s)	326, 446
BspANI	GGCC	1 cut(s)	520
BspCNI	CTCAG	1 cut(s)	238
BspEI	TCCGGA	1 cut(s)	97
BspMI	ACCTGC	1 cut(s)	229
BspPI	GGATC	1 cut(s)	579
BspT104I	TTCGAA	1 cut(s)	561
BspTI	CTTAAG	1 cut(s)	539
BsrBI	CCGCTC	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	2 cut(s)	356, 584
BssNAI	GTATAC	1 cut(s)	402
BssT1I	CCWWGG	1 cut(s)	33
Bst1107I	GTATAC	1 cut(s)	402
Bst4CI	ACNGT	1 cut(s)	393
Bst6I	CTCTTC	1 cut(s)	339
BstAFI	CTTAAG	1 cut(s)	539
BstBI	TTCGAA	1 cut(s)	561
BstDEI	CTNAG	1 cut(s)	225
BstKTI	GATC	2 cut(s)	359, 587
BstMAI	GTCTC	3 cut(s)	95, 163, 460
BstMBI	GATC	2 cut(s)	356, 584
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 503
BstV2I	GAAGAC	1 cut(s)	570
BstX2I	RGATCY	1 cut(s)	584
BstYI	RGATCY	1 cut(s)	584
BstZ17I	GTATAC	1 cut(s)	402
Bsu36I	CCTNAGG	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	520
BtgZI	GCGATG	1 cut(s)	315
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	114
BveI	ACCTGC	1 cut(s)	229
CviAII	CATG	3 cut(s)	28, 233, 371
CviJI	RGCY	2 cut(s)	375, 520
CviKI_1	RGCY	2 cut(s)	375, 520
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	2 cut(s)	358, 586
DpnII	GATC	2 cut(s)	356, 584
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	33
Eco81I	CCTNAGG	1 cut(s)	225
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	3 cut(s)	31, 236, 374
FalI	AAGNNNNNCTT	2 cut(s)	533, 565
FatI	CATG	3 cut(s)	27, 232, 370
FblI	GTMKAC	1 cut(s)	401
FspBI	CTAG	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	1 cut(s)	520
HapII	CCGG	1 cut(s)	98
Hin1II	CATG	3 cut(s)	31, 236, 374
HincII	GTYRAC	3 cut(s)	52, 244, 270
HindII	GTYRAC	3 cut(s)	52, 244, 270
HinfI	GANTC	2 cut(s)	134, 187
HpaI	GTTAAC	1 cut(s)	52
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	4 cut(s)	52, 244, 270, 402
Hpy188I	TCNGA	4 cut(s)	133, 286, 356, 484
Hpy188III	TCNNGA	8 cut(s)	98, 227, 321, 360, 425, 514, 530, 582
Hpy8I	GTNNAC	4 cut(s)	52, 244, 270, 402
HpyAV	CCTTC	2 cut(s)	31, 159
HpyCH4III	ACNGT	1 cut(s)	393
HpyCH4V	TGCA	4 cut(s)	46, 196, 479, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 503
HpyF3I	CTNAG	1 cut(s)	225
Hsp92II	CATG	3 cut(s)	31, 236, 374
Kpn2I	TCCGGA	1 cut(s)	97
KspAI	GTTAAC	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	356, 584
LmnI	GCTCC	1 cut(s)	323
LpnPI	CCDG	9 cut(s)	90, 111, 189, 212, 224, 306, 345, 390, 483
LweI	GCATC	1 cut(s)	488
MaeI	CTAG	1 cut(s)	15
MalI	GATC	2 cut(s)	358, 586
MbiI	CCGCTC	1 cut(s)	326
MboI	GATC	2 cut(s)	356, 584
MboII	GAAGA	2 cut(s)	356, 570
MfeI	CAATTG	1 cut(s)	378
MflI	RGATCY	1 cut(s)	584
MluCI	AATT	7 cut(s)	64, 93, 217, 337, 363, 378, 507
MnlI	CCTC	8 cut(s)	65, 171, 234, 287, 340, 471, 474, 510
MroI	TCCGGA	1 cut(s)	97
MseI	TTAA	5 cut(s)	51, 90, 275, 330, 540
MspCI	CTTAAG	1 cut(s)	539
MspI	CCGG	1 cut(s)	98
MunI	CAATTG	1 cut(s)	378
MwoI	GCNNNNNNNGC	2 cut(s)	68, 503
NdeII	GATC	2 cut(s)	356, 584
NlaIII	CATG	3 cut(s)	31, 236, 374
NspV	TTCGAA	1 cut(s)	561
PfeI	GAWTC	2 cut(s)	134, 187
PsuI	RGATCY	1 cut(s)	584
SaqAI	TTAA	5 cut(s)	51, 90, 275, 330, 540
Sau3AI	GATC	2 cut(s)	356, 584
SetI	ASST	5 cut(s)	57, 109, 243, 298, 401
SfaNI	GCATC	1 cut(s)	488
SfuI	TTCGAA	1 cut(s)	561
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
SpeI	ACTAGT	1 cut(s)	14
Sse9I	AATT	7 cut(s)	64, 93, 217, 337, 363, 378, 507
SsiI	CCGC	2 cut(s)	326, 446
SspI	AATATT	1 cut(s)	127
SspMI	CTAG	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	393
TaqI	TCGA	1 cut(s)	561
TasI	AATT	7 cut(s)	64, 93, 217, 337, 363, 378, 507
TfiI	GAWTC	2 cut(s)	134, 187
Tru1I	TTAA	5 cut(s)	51, 90, 275, 330, 540
Tru9I	TTAA	5 cut(s)	51, 90, 275, 330, 540
TscAI	CASTG	1 cut(s)	121
TspDTI	ATGAA	3 cut(s)	203, 303, 306
TspGWI	ACGGA	1 cut(s)	69
TspRI	CASTG	1 cut(s)	121
Vha464I	CTTAAG	1 cut(s)	539
XapI	RAATTY	3 cut(s)	64, 93, 363
XmiI	GTMKAC	1 cut(s)	401
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.