Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000879

Physical Location & Seq

Genomic Coordinates Reverse (-)

20000297 .. 20000932

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G009080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCTTCATGTAGTTACTTGGTTCTCTTTAGGCATTGTCTTGATGCATTTTACTTATGACTTTAAATTCTTATTTAATGCATATTCGGTTAAACATGTCACCTCTCCATCTGTCCGTGATAGGGGTACACCAGTCTCATTTACTCCCCAGCCATCTGCTTCTGCTAATCTACCTGGATATGGAACTTCGGCTACTGTTGCAATGGATAGAACTTCTAGTTTATCCTCTAGGACTTCTTTCTCTTCAGGACTTCATCTGTCACAAGCGAAGTTACATGGTAGAGGTACTGAGCCTAGTCTGGAAAGTGTGTATGCAAGCAAACAGAAGGTCAGTGCAATTGAAAGCATGCTTAGAGGTTTGGAGTTGTTTGACAGACATAATTCTTCAACTTTTTGGTCATCTGGTCTGGATCTAGGAGTTGATCCTCCATCATCTTGTGATCCACATTCCCTGCTGCTGTCCCAGCTTCTAATCATCTTTCAAACTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

163

Amino Acids

17.8

Weight (kDa)

7.97

Isoelectric Point (pI)

43.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29760 AT3G29760 AT3G29760 AT3G29760 AT3G29760
fragaria_vesca	FvH4_5g13671 FvH4_5g13671 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700
malus_domestica	MD06G1203100.v1.1 MD09G1068500.v1.1 MD14G1213700.v1.1 MD17G1061400.v1.1
prunus_persica	Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.5G206600_v2.0.a1
pyrus_communis	pycom06g18090 pycom12433g00100 pycom14g17710 pycom17g06130
rosa_chinensis	RchiOBHm_Chr1g0330571 RchiOBHm_Chr1g0330791 RchiOBHm_Chr1g0330841 RchiOBHm_Chr2g0165581 RchiOBHm_Chr7g0183261 RchiOBHm_Chr7g0183271
rosa_laevigata	RLG00000005061 RLG00000021541
rosa_multiflora	Rmu_sc0000815.1_g000003 Rmu_sc0005425.1_g000020 Rmu_sc0008744.1_g000011 Rmu_sc0014529.1_g000002 Rmu_sc0018426.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085710 Rroxscaffold_3G00270610
rosa_rugosa	Rorug02G0516200 Rorug05G0496600 Rorug05G0496600 Rorug05G0496600 Rorug06G0455700
rosa_samantha	Rh1AG107500 Rh1AG107600 Rh1AG111800 Rh1CG103400 Rh1CG106100 Rh1CG107100 Rh1DG113000 Rh2AG582300 Rh2BG594500 Rh2CG564400 Rh2DG604400 Rh7AG057700 Rh7BG057500 Rh7CG059100 Rh7DG057300
rosa_wichuraiana	Rw0G004370 Rw0G016070 Rw1G009080 Rw2G048580 Rw7G004720 Rw7G004730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	416, 417, 434
AcsI	RAATTY	1 cut(s)	65
AcuI	CTGAAG	1 cut(s)	228
AfaI	GTAC	2 cut(s)	127, 286
AfiI	CCNNNNNNNGG	2 cut(s)	121, 179
AflIII	ACRYGT	1 cut(s)	94
AgsI	TTSAA	3 cut(s)	341, 387, 482
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	1 cut(s)	466
AluI	AGCT	1 cut(s)	466
Alw26I	GTCTC	1 cut(s)	139
AlwI	GGATC	3 cut(s)	416, 417, 434
ApeKI	GCWGC	1 cut(s)	454
ApoI	RAATTY	1 cut(s)	65
ArsI	GACNNNNNNTTYG	2 cut(s)	312, 344
AsuHPI	GGTGA	1 cut(s)	91
BaeI	ACNNNNGTAYC	2 cut(s)	117, 150
BbvI	GCAGC	1 cut(s)	441
BccI	CCATC	3 cut(s)	115, 160, 436
BciT130I	CCWGG	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	139
BfaI	CTAG	4 cut(s)	216, 228, 294, 413
BisI	GCNGC	1 cut(s)	455
BlsI	GCNGC	1 cut(s)	456
Bme1390I	CCNGG	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	174
BmsI	GCATC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 179
Bse1I	ACTGG	1 cut(s)	131
Bse3DI	GCAATG	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	121, 179
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	131
BseXI	GCAGC	1 cut(s)	441
BseYI	CCCAGC	2 cut(s)	147, 462
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	2 cut(s)	121, 179
BsmAI	GTCTC	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	445
Bsp143I	GATC	3 cut(s)	409, 421, 439
BspCNI	CTCAG	1 cut(s)	280
BspPI	GGATC	3 cut(s)	416, 417, 434
BsrDI	GCAATG	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	131
BssMI	GATC	3 cut(s)	409, 421, 439
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	2 cut(s)	196, 487
Bst6I	CTCTTC	1 cut(s)	247
BstC8I	GCNNGC	2 cut(s)	316, 347
BstDEI	CTNAG	2 cut(s)	288, 350
BstKTI	GATC	3 cut(s)	412, 424, 442
BstMAI	GTCTC	1 cut(s)	139
BstMBI	GATC	3 cut(s)	409, 421, 439
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 463
BstNI	CCWGG	1 cut(s)	174
BstNSI	RCATGY	2 cut(s)	98, 349
BstSCI	CCNGG	1 cut(s)	172
BstV1I	GCAGC	1 cut(s)	441
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
BtsIMutI	CAGTG	1 cut(s)	337
Cac8I	GCNNGC	2 cut(s)	316, 347
Csp6I	GTAC	2 cut(s)	126, 285
CviAII	CATG	4 cut(s)	8, 95, 275, 346
CviJI	RGCY	4 cut(s)	151, 191, 292, 466
CviKI_1	RGCY	4 cut(s)	151, 191, 292, 466
CviQI	GTAC	2 cut(s)	126, 285
DdeI	CTNAG	2 cut(s)	288, 350
DpnI	GATC	3 cut(s)	411, 423, 441
DpnII	GATC	3 cut(s)	409, 421, 439
DraI	TTTAAA	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	247
EarI	CTCTTC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	172
EcoT22I	ATGCAT	2 cut(s)	48, 82
FaeI	CATG	4 cut(s)	11, 98, 278, 349
FaiI	YATR	9 cut(s)	9, 57, 82, 96, 180, 276, 312, 347, 378
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	4 cut(s)	7, 94, 274, 345
Fnu4HI	GCNGC	1 cut(s)	455
Fsp4HI	GCNGC	1 cut(s)	455
FspBI	CTAG	4 cut(s)	216, 228, 294, 413
GluI	GCNGC	1 cut(s)	455
GsaI	CCCAGC	2 cut(s)	151, 466
Hin1II	CATG	4 cut(s)	11, 98, 278, 349
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188III	TCNNGA	4 cut(s)	40, 246, 299, 407
Hpy8I	GTNNAC	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	319
HpyCH4III	ACNGT	2 cut(s)	196, 487
HpyCH4V	TGCA	5 cut(s)	46, 80, 200, 314, 335
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 463
HpyF3I	CTNAG	2 cut(s)	288, 350
Hsp92II	CATG	4 cut(s)	11, 98, 278, 349
Kzo9I	GATC	3 cut(s)	409, 421, 439
Lsp1109I	GCAGC	1 cut(s)	441
LweI	GCATC	1 cut(s)	33
MaeI	CTAG	4 cut(s)	216, 228, 294, 413
MaeIII	GTNAC	4 cut(s)	13, 97, 258, 270
MalI	GATC	3 cut(s)	411, 423, 441
MboI	GATC	3 cut(s)	409, 421, 439
MboII	GAAGA	2 cut(s)	234, 375
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	1 cut(s)	409
MluCI	AATT	3 cut(s)	65, 336, 379
MnlI	CCTC	5 cut(s)	112, 235, 275, 347, 435
Mph1103I	ATGCAT	2 cut(s)	48, 82
MseI	TTAA	3 cut(s)	63, 75, 90
MspR9I	CCNGG	1 cut(s)	174
MunI	CAATTG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	2 cut(s)	197, 463
NdeII	GATC	3 cut(s)	409, 421, 439
NlaIII	CATG	4 cut(s)	11, 98, 278, 349
NmuCI	GTSAC	2 cut(s)	97, 258
NsiI	ATGCAT	2 cut(s)	48, 82
NspI	RCATGY	2 cut(s)	98, 349
PaeI	GCATGC	1 cut(s)	349
PciI	ACATGT	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	456
PscI	ACATGT	1 cut(s)	94
Psp6I	CCWGG	1 cut(s)	172
PspFI	CCCAGC	2 cut(s)	147, 462
PspGI	CCWGG	1 cut(s)	172
PsrI	GAACNNNNNNTAC	2 cut(s)	175, 207
PsuI	RGATCY	1 cut(s)	409
RsaI	GTAC	2 cut(s)	127, 286
RsaNI	GTAC	2 cut(s)	126, 285
SaqAI	TTAA	3 cut(s)	63, 75, 90
SatI	GCNGC	1 cut(s)	455
Sau3AI	GATC	3 cut(s)	409, 421, 439
ScrFI	CCNGG	1 cut(s)	174
SetI	ASST	6 cut(s)	104, 175, 286, 330, 358, 468
SfaNI	GCATC	1 cut(s)	33
SphI	GCATGC	1 cut(s)	349
Sse9I	AATT	3 cut(s)	65, 336, 379
SspMI	CTAG	4 cut(s)	216, 228, 294, 413
StyD4I	CCNGG	1 cut(s)	172
TaaI	ACNGT	2 cut(s)	196, 487
TasI	AATT	3 cut(s)	65, 336, 379
Tru1I	TTAA	3 cut(s)	63, 75, 90
Tru9I	TTAA	3 cut(s)	63, 75, 90
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	2 cut(s)	97, 258
TseI	GCWGC	1 cut(s)	454
Tsp45I	GTSAC	2 cut(s)	97, 258
TspDTI	ATGAA	1 cut(s)	242
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	1 cut(s)	337
XapI	RAATTY	1 cut(s)	65
XceI	RCATGY	2 cut(s)	98, 349
XspI	CTAG	4 cut(s)	216, 228, 294, 413
Zsp2I	ATGCAT	2 cut(s)	48, 82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.