RLG00000021541

FCP1 homology domain-containing protein C1271.03c-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000879
Physical Location & Seq
Forward (+)
76274767 .. 76277779
3013 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021541

Sequence Viewer

Length: 1173 bp
ATGATTAGGCATACTAGTTCCTTCTCCATGACCAAGGGTGAAGTGCAAGTTAACCTCTTGGCAAATTCAGCACCCCGTCCGTCCTTTGTTAAAATTCCGGAGACAGGTATGGACACTGCCAAAAATATTTCGGAATCAAGTCAAGTGTTGAAAAAGAGAACAAGAAGGAGAAATAGGAGGAAACCAAATCTAATGCAAAATACTGGCGTAGTTCATAATTTGCCTCAGGAACATGGGCAGGGTGACACTAAATATATCAAAAGATTGTCAACTTTAAGTTTATCAGATGAAAGAGGTAGCGATGTATTAGTTATTTCATCTGGAGTGGTTAAAACTAATTGTGAAGAGGACGTCAGCTCAGGAATTTCACATGGCTCAATTGTGAGAGAACCGTTTAGGTATACAGGGAAAAAACTTCTTATTCTTGACATTAATGGACTTATTGCGGATATAGTCTCTCCTCCTCCAAAGGGATTTGCATCTGACATAAGGATTGCAGGAAGAGCAATTTTCAAGAGGCCATTCTATCTTGATTTTCTTAAGTTCTGCTTTGAGCGTTTCGAAGTGGGTGTGTGGTCTTCAAGATCCAAGAAAATTGTGGAAAGAGTGGTTGATTATCTAATGGGTGATCTAAAGCACAAGTTGCTGTTTTGTTGGGATCTATCCCAGTGCACTACAACAGGGTTCAGAACTCTAGAAAATAAGCACAAGACCTTGGTGTTTAAGGATCTGAGGAGAATTTGGGAAGAAGATGAATCTAGTCTTCCATGGGAGAAGGGCGTATATAATGAATCTAATACGTTATTGTTGGATGATTCTCCGTACAAAGCCCTGCTTAATCCTGCACATACTGGGGTCTTTCCTTATCCATACACGTTTCATGGAGGGTGCGACAATGCGTTAGGTCCTGGAGGTCGTCTTCGGACCTATTTGGAAAAGTTGGCCGCAGCTGAAAATCTACAAGAGTTTGTAGACCAACATCCATTTGGTCAAAGACCTATTACTGAAAGAAGTGCATCTTGGGACTTTTACCTCAGGACTCGTATGTTCGTTGCTGAAGCTGGTGTTTTCTTCATCTTGGGCTCTTGGGCTCAATCTGTGTGGGTAGACTTATTCTTGGGCTCAGTCTGTGTGGTTAGATATATTCTTGGGCTCAAGCTATATGGTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NIF

Protein Analysis

391

Amino Acids

44.23

Weight (kDa)

9.29

Isoelectric Point (pI)

40.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 138 - 319 2.1e-15 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 354
AccI GTMKAC 3 cut(s) 401, 972, 1107
AccIII TCCGGA 1 cut(s) 97
AciI CCGC 2 cut(s) 446, 945
AclWI GGATC 3 cut(s) 579, 666, 735
AcoI YGGCCR 1 cut(s) 942
AcsI RAATTY 4 cut(s) 64, 93, 363, 738
AcuI CTGAAG 1 cut(s) 1077
AcyI GRCGYC 1 cut(s) 351
AfaI GTAC 1 cut(s) 824
AfiI CCNNNNNNNGG 2 cut(s) 104, 470
AflII CTTAAG 1 cut(s) 539
AflIII ACRYGT 1 cut(s) 873
AgsI TTSAA 3 cut(s) 151, 514, 582
AhlI ACTAGT 1 cut(s) 14
AjnI CCWGG 1 cut(s) 907
AjuI GAANNNNNNNTTGG 2 cut(s) 1003, 1035
AluBI AGCT 4 cut(s) 357, 950, 1061, 1159
AluI AGCT 4 cut(s) 357, 950, 1061, 1159
Alw21I GWGCWC 1 cut(s) 674
Alw26I GTCTC 2 cut(s) 95, 460
Alw44I GTGCAC 1 cut(s) 670
AlwI GGATC 3 cut(s) 579, 666, 735
Aor13HI TCCGGA 1 cut(s) 97
AoxI GGCC 2 cut(s) 518, 942
ApaLI GTGCAC 1 cut(s) 670
ApeKI GCWGC 1 cut(s) 947
ApoI RAATTY 4 cut(s) 64, 93, 363, 738
AseI ATTAAT 1 cut(s) 432
AspS9I GGNCC 2 cut(s) 905, 924
AsuHPI GGTGA 3 cut(s) 50, 254, 638
AsuII TTCGAA 1 cut(s) 561
AvaII GGWCC 2 cut(s) 905, 924
AxyI CCTNAGG 2 cut(s) 225, 1034
BaeGI GKGCMC 1 cut(s) 674
BanII GRGCYC 4 cut(s) 1085, 1093, 1124, 1155
BbsI GAAGAC 3 cut(s) 570, 755, 911
Bbv12I GWGCWC 1 cut(s) 674
BbvI GCAGC 1 cut(s) 959
BciT130I CCWGG 1 cut(s) 909
BcoDI GTCTC 2 cut(s) 95, 460
BcuI ACTAGT 1 cut(s) 14
BfaI CTAG 3 cut(s) 15, 695, 759
BfrI CTTAAG 1 cut(s) 539
BisI GCNGC 2 cut(s) 945, 948
BlsI GCNGC 2 cut(s) 946, 949
Bme1390I CCNGG 1 cut(s) 909
Bme18I GGWCC 2 cut(s) 905, 924
BmgT120I GGNCC 2 cut(s) 905, 924
BmrFI CCNGG 1 cut(s) 909
BmrI ACTGGG 2 cut(s) 661, 861
BmsI GCATC 2 cut(s) 488, 1025
BmuI ACTGGG 2 cut(s) 661, 861
BpiI GAAGAC 3 cut(s) 570, 755, 911
BpmI CTGGAG 2 cut(s) 342, 930
Bpu10I CCTNAGC 1 cut(s) 358
Bpu14I TTCGAA 1 cut(s) 561
BpuEI CTTGAG 1 cut(s) 1139
BsaBI GATNNNNATC 1 cut(s) 478
BsaHI GRCGYC 1 cut(s) 351
BsaJI CCNNGG 3 cut(s) 33, 714, 767
BsaWI WCCGGW 1 cut(s) 97
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 470
Bse1I ACTGG 3 cut(s) 208, 667, 856
Bse21I CCTNAGG 2 cut(s) 225, 1034
Bse8I GATNNNNATC 1 cut(s) 478
BseAI TCCGGA 1 cut(s) 97
BseBI CCWGG 1 cut(s) 909
BseDI CCNNGG 3 cut(s) 33, 714, 767
BseGI GGATG 2 cut(s) 817, 979
BseJI GATNNNNATC 1 cut(s) 478
BseLI CCNNNNNNNGG 2 cut(s) 104, 470
BseMII CTCAG 5 cut(s) 239, 372, 722, 1048, 1137
BseNI ACTGG 3 cut(s) 208, 667, 856
BseRI GAGGAG 3 cut(s) 450, 453, 748
BseSI GKGCMC 1 cut(s) 674
BseXI GCAGC 1 cut(s) 959
BsgI GTGCAG 1 cut(s) 828
BshFI GGCC 2 cut(s) 520, 944
BsiHKAI GWGCWC 1 cut(s) 674
BsiSI CCGG 1 cut(s) 98
BslFI GGGAC 1 cut(s) 1037
BslI CCNNNNNNNGG 2 cut(s) 104, 470
BsmAI GTCTC 2 cut(s) 95, 460
BsmFI GGGAC 1 cut(s) 1037
BsnI GGCC 2 cut(s) 520, 944
Bsp119I TTCGAA 1 cut(s) 561
Bsp1286I GDGCHC 5 cut(s) 674, 1085, 1093, 1124, 1155
Bsp13I TCCGGA 1 cut(s) 97
Bsp143I GATC 4 cut(s) 584, 628, 658, 727
Bsp19I CCATGG 1 cut(s) 767
BspACI CCGC 2 cut(s) 446, 945
BspANI GGCC 2 cut(s) 520, 944
BspCNI CTCAG 5 cut(s) 238, 371, 723, 1047, 1136
BspEI TCCGGA 1 cut(s) 97
BspPI GGATC 3 cut(s) 579, 666, 735
BspQI GCTCTTC 1 cut(s) 496
BspT104I TTCGAA 1 cut(s) 561
BspTI CTTAAG 1 cut(s) 539
BsrI ACTGG 3 cut(s) 208, 667, 856
BssECI CCNNGG 3 cut(s) 33, 714, 767
BssMI GATC 4 cut(s) 584, 628, 658, 727
BssNAI GTATAC 1 cut(s) 402
BssNI GRCGYC 1 cut(s) 351
BssT1I CCWWGG 3 cut(s) 33, 714, 767
Bst1107I GTATAC 1 cut(s) 402
Bst2UI CCWGG 1 cut(s) 909
Bst4CI ACNGT 1 cut(s) 393
Bst6I CTCTTC 2 cut(s) 339, 496
BstACI GRCGYC 1 cut(s) 351
BstAFI CTTAAG 1 cut(s) 539
BstAPI GCANNNNNTGC 1 cut(s) 643
BstBI TTCGAA 1 cut(s) 561
BstDEI CTNAG 5 cut(s) 225, 358, 731, 1034, 1123
BstDSI CCRYGG 1 cut(s) 767
BstF5I GGATG 2 cut(s) 817, 979
BstKTI GATC 4 cut(s) 587, 631, 661, 730
BstMAI GTCTC 2 cut(s) 95, 460
BstMBI GATC 4 cut(s) 584, 628, 658, 727
BstMWI GCNNNNNNNGC 3 cut(s) 68, 503, 643
BstNI CCWGG 1 cut(s) 909
BstSCI CCNGG 1 cut(s) 907
BstSLI GKGCMC 1 cut(s) 674
BstV1I GCAGC 1 cut(s) 959
BstV2I GAAGAC 3 cut(s) 570, 755, 911
BstX2I RGATCY 3 cut(s) 584, 658, 727
BstYI RGATCY 3 cut(s) 584, 658, 727
BstZ17I GTATAC 1 cut(s) 402
Bsu36I CCTNAGG 2 cut(s) 225, 1034
BsuRI GGCC 2 cut(s) 520, 944
BtgI CCRYGG 1 cut(s) 767
BtgZI GCGATG 1 cut(s) 315
BtsCI GGATG 2 cut(s) 817, 979
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 2 cut(s) 114, 674
Cfr13I GGNCC 2 cut(s) 905, 924
Csp6I GTAC 1 cut(s) 823
CspCI CAANNNNNGTGG 2 cut(s) 1082, 1117
CviAII CATG 5 cut(s) 28, 233, 371, 768, 881
CviQI GTAC 1 cut(s) 823
DdeI CTNAG 5 cut(s) 225, 358, 731, 1034, 1123
DpnI GATC 4 cut(s) 586, 630, 660, 729
DpnII GATC 4 cut(s) 584, 628, 658, 727
EaeI YGGCCR 1 cut(s) 942
Eam1104I CTCTTC 2 cut(s) 339, 496
EarI CTCTTC 2 cut(s) 339, 496
Eco130I CCWWGG 3 cut(s) 33, 714, 767
Eco24I GRGCYC 4 cut(s) 1085, 1093, 1124, 1155
Eco47I GGWCC 2 cut(s) 905, 924
Eco57I CTGAAG 1 cut(s) 1077
Eco81I CCTNAGG 2 cut(s) 225, 1034
EcoO109I RGGNCCY 1 cut(s) 905
EcoRII CCWGG 1 cut(s) 907
EcoT14I CCWWGG 3 cut(s) 33, 714, 767
EcoT38I GRGCYC 4 cut(s) 1085, 1093, 1124, 1155
ErhI CCWWGG 3 cut(s) 33, 714, 767
FaeI CATG 5 cut(s) 31, 236, 374, 771, 884
FalI AAGNNNNNCTT 6 cut(s) 533, 565, 819, 851, 1003, 1035
FaqI GGGAC 1 cut(s) 1037
FatI CATG 5 cut(s) 27, 232, 370, 767, 880
FblI GTMKAC 3 cut(s) 401, 972, 1107
Fnu4HI GCNGC 2 cut(s) 945, 948
FokI GGATG 2 cut(s) 824, 966
FriOI GRGCYC 4 cut(s) 1085, 1093, 1124, 1155
Fsp4HI GCNGC 2 cut(s) 945, 948
FspBI CTAG 3 cut(s) 15, 695, 759
GluI GCNGC 2 cut(s) 945, 948
GsuI CTGGAG 2 cut(s) 342, 930
HaeIII GGCC 2 cut(s) 520, 944
HapII CCGG 1 cut(s) 98
Hin1I GRCGYC 1 cut(s) 351
Hin1II CATG 5 cut(s) 31, 236, 374, 771, 884
HincII GTYRAC 2 cut(s) 52, 270
HindII GTYRAC 2 cut(s) 52, 270
HinfI GANTC 5 cut(s) 134, 755, 791, 815, 1039
HpaI GTTAAC 1 cut(s) 52
HpaII CCGG 1 cut(s) 98
HphI GGTGA 3 cut(s) 50, 254, 638
Hpy166II GTNNAC 6 cut(s) 52, 270, 402, 672, 973, 1108
Hpy188I TCNGA 6 cut(s) 133, 286, 484, 689, 732, 924
Hpy8I GTNNAC 6 cut(s) 52, 270, 402, 672, 973, 1108
HpyAV CCTTC 3 cut(s) 31, 159, 769
HpyCH4III ACNGT 1 cut(s) 393
HpyCH4IV ACGT 3 cut(s) 351, 800, 875
HpyCH4V TGCA 7 cut(s) 46, 196, 479, 497, 672, 845, 1016
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 503, 643
HpyF3I CTNAG 5 cut(s) 225, 358, 731, 1034, 1123
HpySE526I ACGT 3 cut(s) 351, 800, 875
Hsp92I GRCGYC 1 cut(s) 351
Hsp92II CATG 5 cut(s) 31, 236, 374, 771, 884
Kpn2I TCCGGA 1 cut(s) 97
KspAI GTTAAC 1 cut(s) 52
Kzo9I GATC 4 cut(s) 584, 628, 658, 727
LguI GCTCTTC 1 cut(s) 496
Lsp1109I GCAGC 1 cut(s) 959
LweI GCATC 2 cut(s) 488, 1025
MaeI CTAG 3 cut(s) 15, 695, 759
MaeII ACGT 3 cut(s) 351, 800, 875
MaeIII GTNAC 1 cut(s) 242
MalI GATC 4 cut(s) 586, 630, 660, 729
MboI GATC 4 cut(s) 584, 628, 658, 727
MboII GAAGA 8 cut(s) 356, 513, 570, 755, 758, 761, 911, 1063
MfeI CAATTG 1 cut(s) 378
MflI RGATCY 3 cut(s) 584, 658, 727
MhlI GDGCHC 5 cut(s) 674, 1085, 1093, 1124, 1155
MluCI AATT 9 cut(s) 64, 93, 217, 337, 363, 378, 507, 594, 738
MlyI GAGTC 1 cut(s) 1033
MmeI TCCRAC 1 cut(s) 789
MroI TCCGGA 1 cut(s) 97
MseI TTAA 8 cut(s) 51, 90, 275, 330, 432, 540, 723, 837
MspA1I CMGCKG 1 cut(s) 950
MspCI CTTAAG 1 cut(s) 539
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 909
MunI CAATTG 1 cut(s) 378
MvaI CCWGG 1 cut(s) 909
MwoI GCNNNNNNNGC 3 cut(s) 68, 503, 643
NcoI CCATGG 1 cut(s) 767
NdeII GATC 4 cut(s) 584, 628, 658, 727
NlaIII CATG 5 cut(s) 31, 236, 374, 771, 884
NmuCI GTSAC 1 cut(s) 242
NspV TTCGAA 1 cut(s) 561
PciSI GCTCTTC 1 cut(s) 496
PfeI GAWTC 4 cut(s) 134, 755, 791, 815
PfoI TCCNGGA 1 cut(s) 907
PkrI GCNGC 2 cut(s) 946, 949
PleI GAGTC 1 cut(s) 1033
PpsI GAGTC 1 cut(s) 1033
PpuMI RGGWCCY 1 cut(s) 905
PshBI ATTAAT 1 cut(s) 432
Psp5II RGGWCCY 1 cut(s) 905
Psp6I CCWGG 1 cut(s) 907
PspGI CCWGG 1 cut(s) 907
PspPI GGNCC 2 cut(s) 905, 924
PspPPI RGGWCCY 1 cut(s) 905
PsuI RGATCY 3 cut(s) 584, 658, 727
PvuII CAGCTG 1 cut(s) 950
RsaI GTAC 1 cut(s) 824
RsaNI GTAC 1 cut(s) 823
SapI GCTCTTC 1 cut(s) 496
SaqAI TTAA 8 cut(s) 51, 90, 275, 330, 432, 540, 723, 837
SatI GCNGC 2 cut(s) 945, 948
Sau3AI GATC 4 cut(s) 584, 628, 658, 727
Sau96I GGNCC 2 cut(s) 905, 924
SchI GAGTC 1 cut(s) 1033
ScrFI CCNGG 1 cut(s) 909
SduI GDGCHC 5 cut(s) 674, 1085, 1093, 1124, 1155
SfaNI GCATC 2 cut(s) 488, 1025
SfuI TTCGAA 1 cut(s) 561
SinI GGWCC 2 cut(s) 905, 924
SmlI CTYRAG 2 cut(s) 539, 1154
SmoI CTYRAG 2 cut(s) 539, 1154
SpeI ACTAGT 1 cut(s) 14
Sse9I AATT 9 cut(s) 64, 93, 217, 337, 363, 378, 507, 594, 738
SsiI CCGC 2 cut(s) 446, 945
SspI AATATT 1 cut(s) 127
SspMI CTAG 3 cut(s) 15, 695, 759
StyD4I CCNGG 1 cut(s) 907
StyI CCWWGG 3 cut(s) 33, 714, 767
TaaI ACNGT 1 cut(s) 393
TaiI ACGT 3 cut(s) 354, 803, 878
TaqI TCGA 1 cut(s) 561
TasI AATT 9 cut(s) 64, 93, 217, 337, 363, 378, 507, 594, 738
TauI GCSGC 1 cut(s) 947
TfiI GAWTC 4 cut(s) 134, 755, 791, 815
Tru1I TTAA 8 cut(s) 51, 90, 275, 330, 432, 540, 723, 837
Tru9I TTAA 8 cut(s) 51, 90, 275, 330, 432, 540, 723, 837
TscAI CASTG 2 cut(s) 121, 674
TseFI GTSAC 1 cut(s) 242
TseI GCWGC 1 cut(s) 947
Tsp45I GTSAC 1 cut(s) 242
TspDTI ATGAA 7 cut(s) 203, 303, 306, 768, 804, 869, 1063
TspGWI ACGGA 2 cut(s) 69, 810
TspRI CASTG 2 cut(s) 121, 674
Vha464I CTTAAG 1 cut(s) 539
VneI GTGCAC 1 cut(s) 670
VpaK11BI GGWCC 2 cut(s) 905, 924
VspI ATTAAT 1 cut(s) 432
XapI RAATTY 4 cut(s) 64, 93, 363, 738
XbaI TCTAGA 1 cut(s) 694
XcmI CCANNNNNNNNNTGG 2 cut(s) 595, 983
XmiI GTMKAC 3 cut(s) 401, 972, 1107
XspI CTAG 3 cut(s) 15, 695, 759
ZraI GACGTC 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.