Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000879

Physical Location & Seq

Genomic Coordinates Reverse (-)

18618425 .. 18619570

Gene Structure 1146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG107500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGCACAATCTTCACCTGAAAAATCTCTTCTTAAGTGTTCTCAGAAAAAGCTTCTCATTCTTGATATTAATGGGCTGCTTGCTGATATTGTTCAGATGGAAGATTCTAACTGCAGTAGTTTTAAACCAGACAAAGTTATATCATGGAAAGCAGGTGATAATGGCGTCGGATTTACAATGAGGTTTAGAATTCTAGTACATGATATTGACTACACGGAAGAGGCTGAATGCCGGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

79

Amino Acids

8.88

Weight (kDa)

5.23

Isoelectric Point (pI)

36.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29760 AT3G29760 AT3G29760 AT3G29760 AT3G29760
fragaria_vesca	FvH4_5g13671 FvH4_5g13671 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700
malus_domestica	MD06G1203100.v1.1 MD09G1068500.v1.1 MD14G1213700.v1.1 MD17G1061400.v1.1
prunus_persica	Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.5G206600_v2.0.a1
pyrus_communis	pycom06g18090 pycom12433g00100 pycom14g17710 pycom17g06130
rosa_chinensis	RchiOBHm_Chr1g0330571 RchiOBHm_Chr1g0330791 RchiOBHm_Chr1g0330841 RchiOBHm_Chr2g0165581 RchiOBHm_Chr7g0183261 RchiOBHm_Chr7g0183271
rosa_laevigata	RLG00000005061 RLG00000021541
rosa_multiflora	Rmu_sc0000815.1_g000003 Rmu_sc0005425.1_g000020 Rmu_sc0008744.1_g000011 Rmu_sc0014529.1_g000002 Rmu_sc0018426.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085710 Rroxscaffold_3G00270610
rosa_rugosa	Rorug02G0516200 Rorug05G0496600 Rorug05G0496600 Rorug05G0496600 Rorug06G0455700
rosa_samantha	Rh1AG107500 Rh1AG107600 Rh1AG111800 Rh1CG103400 Rh1CG106100 Rh1CG107100 Rh1DG113000 Rh2AG582300 Rh2BG594500 Rh2CG564400 Rh2DG604400 Rh7AG057700 Rh7BG057500 Rh7CG059100 Rh7DG057300
rosa_wichuraiana	Rw0G004370 Rw0G016070 Rw1G009080 Rw2G048580 Rw7G004720 Rw7G004730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	143
Acc36I	ACCTGC	1 cut(s)	143
AcsI	RAATTY	1 cut(s)	189
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	1 cut(s)	198
AflII	CTTAAG	1 cut(s)	32
AluBI	AGCT	1 cut(s)	52
AluI	AGCT	1 cut(s)	52
ApeKI	GCWGC	1 cut(s)	76
ApoI	RAATTY	1 cut(s)	189
AseI	ATTAAT	1 cut(s)	69
AspS9I	GGNCC	1 cut(s)	234
AsuHPI	GGTGA	2 cut(s)	6, 167
AvaII	GGWCC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	63
BccI	CCATC	1 cut(s)	91
BfaI	CTAG	1 cut(s)	194
BfmI	CTRYAG	1 cut(s)	112
BfrI	CTTAAG	1 cut(s)	32
BfuAI	ACCTGC	1 cut(s)	143
BisI	GCNGC	1 cut(s)	77
BlsI	GCNGC	1 cut(s)	78
Bme18I	GGWCC	1 cut(s)	234
BmgT120I	GGNCC	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	56
BseXI	GCAGC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	232
BsmI	GAATGC	1 cut(s)	233
BspCNI	CTCAG	1 cut(s)	55
BspMAI	CTGCAG	1 cut(s)	116
BspMI	ACCTGC	1 cut(s)	143
BspTI	CTTAAG	1 cut(s)	32
BssNI	GRCGYC	1 cut(s)	165
Bst6I	CTCTTC	2 cut(s)	33, 213
BstACI	GRCGYC	1 cut(s)	165
BstAFI	CTTAAG	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	42
BstSFI	CTRYAG	1 cut(s)	112
BstV1I	GCAGC	1 cut(s)	63
BveI	ACCTGC	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	234
CseI	GACGC	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	197
CviAII	CATG	2 cut(s)	144, 200
CviJI	RGCY	3 cut(s)	52, 76, 224
CviKI_1	RGCY	3 cut(s)	52, 76, 224
CviQI	GTAC	1 cut(s)	197
DdeI	CTNAG	1 cut(s)	42
DraI	TTTAAA	1 cut(s)	124
Eam1104I	CTCTTC	2 cut(s)	33, 213
EarI	CTCTTC	2 cut(s)	33, 213
Eco47I	GGWCC	1 cut(s)	234
EcoRI	GAATTC	1 cut(s)	189
FaeI	CATG	2 cut(s)	147, 203
FaiI	YATR	3 cut(s)	140, 145, 201
FatI	CATG	2 cut(s)	143, 199
Fnu4HI	GCNGC	1 cut(s)	77
Fsp4HI	GCNGC	1 cut(s)	77
FspBI	CTAG	1 cut(s)	194
GluI	GCNGC	1 cut(s)	77
HapII	CCGG	1 cut(s)	232
HgaI	GACGC	1 cut(s)	154
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	2 cut(s)	147, 203
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	1 cut(s)	104
HpaII	CCGG	1 cut(s)	232
HphI	GGTGA	2 cut(s)	6, 167
Hpy188I	TCNGA	3 cut(s)	45, 96, 170
Hpy188III	TCNNGA	1 cut(s)	62
Hpy99I	CGWCG	1 cut(s)	170
HpyCH4V	TGCA	1 cut(s)	114
HpyF3I	CTNAG	1 cut(s)	42
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	2 cut(s)	147, 203
LpnPI	CCDG	3 cut(s)	30, 138, 141
Lsp1109I	GCAGC	1 cut(s)	63
MaeI	CTAG	1 cut(s)	194
MboII	GAAGA	4 cut(s)	3, 20, 113, 230
MluCI	AATT	1 cut(s)	189
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	2 cut(s)	174, 214
MseI	TTAA	3 cut(s)	33, 69, 123
MspCI	CTTAAG	1 cut(s)	32
MspI	CCGG	1 cut(s)	232
Mva1269I	GAATGC	1 cut(s)	233
NlaIII	CATG	2 cut(s)	147, 203
PaqCI	CACCTGC	1 cut(s)	143
PctI	GAATGC	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	1 cut(s)	78
PshBI	ATTAAT	1 cut(s)	69
PspPI	GGNCC	1 cut(s)	234
PstI	CTGCAG	1 cut(s)	116
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
SaqAI	TTAA	3 cut(s)	33, 69, 123
SatI	GCNGC	1 cut(s)	77
Sau96I	GGNCC	1 cut(s)	234
SetI	ASST	5 cut(s)	19, 54, 157, 185, 239
SfcI	CTRYAG	1 cut(s)	112
SgeI	CNNG	9 cut(s)	29, 74, 92, 140, 156, 165, 206, 212, 226
SinI	GGWCC	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	1 cut(s)	189
SspMI	CTAG	1 cut(s)	194
TasI	AATT	1 cut(s)	189
TatI	WGTACW	1 cut(s)	196
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	3 cut(s)	33, 69, 123
Tru9I	TTAA	3 cut(s)	33, 69, 123
TseI	GCWGC	1 cut(s)	76
TspGWI	ACGGA	1 cut(s)	230
Vha464I	CTTAAG	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	234
VspI	ATTAAT	1 cut(s)	69
XapI	RAATTY	1 cut(s)	189
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.