Rh2DG604400

FCP1 homology domain-containing protein C1271.03c-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000879
Physical Location & Seq
Forward (+)
83800271 .. 83804814
4544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG604400.1

Sequence Viewer

Length: 1104 bp
ATGATTAGGCATACTAGTTCCTTCTCCATGACCAAGGGTGAAGTGCAAGTTAACCTCTTGGTAAATTCAGCACCCCGTCCGTCCTTTGTTAAAATTCCAGAGACAGGTATGGACACTGCCAAAAATATTTCGGAATCAAGTCAAGTGTTGAAAAAGAGAACAAGAAGGAGACATAGGAGGAAACCGAATCTAATGCAAAATACTGGCGTAGTTCATAATTTGCCTCAGGAACATGGGCAGGTTGACACTAAATATATAAAAAGATTGTCAACTTTAAGTTTATCAGATGAAACAGGTAGCGATGTATTAGTTATTTCATCTGGAGCGGTTAAAACTAATTGTGAAGAGGACATCAGATCAGGAATTTCACATGGCTCAATTGTGAGAGAACCGTTTAGGTATACAGGGAAAAAACTTCTTATTCTTGACATTAATGGACTTATTGCGGATATAGTCTCTCCTCCTCCAAAGGGATTTGCATCTGACATAAGGATTGCAGGACGAGCAATTTTCAAGAGGCCATACTATCTTGATTTTCTTAAGTTCTGCTTTGAGAGTTTCGAAGTGGGTGTGTGGTCTTCAAGATCCAAGAAAATTGTGGAAAGAGTGGTCGATTATCTAATGGGTGATCTAAAGCACAAGTTGCTGTTTTGTTGGGATCTATCCCACTGCACTACAACAGGGTTCAGAACTCTAGAAAATAAGCACAAGACCTTGGTGTTTAAGGATCTGAGGAGAATTTGGGAAGAAGATGACTCTAGTCTTCCATGGGAGAAGGGCGTATATAATGAATCTAATACGTTATTGTTGGATGATTCTCCGTACAAAGCCCTGCTTAATCCTGCACATACTGGGGTCTTTCCTTATCCATACACGTTTCATGGAGGGTGCGACAATGCGTTAGGTCCTGGAGGTCGTCTTCGGACCTATTTGGAAAAGTTGGCCGCAGCTGAAAATCTACAAGAGTTTGTAGACCAACATCCATTTGGTCAAAGACCTATTACTGAAAGAAGTGCATCTTGGGACTTTTACCTCAGGGTACTCAATACGGTGTATTCCGTAAAAACCAACCAGATAACCTGGAATTCTACTGGTAAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NIF

Protein Analysis

367

Amino Acids

41.76

Weight (kDa)

9.32

Isoelectric Point (pI)

40.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 138 - 319 8.4e-16 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 229
AccBSI CCGCTC 1 cut(s) 326
AccI GTMKAC 2 cut(s) 401, 972
AciI CCGC 3 cut(s) 326, 446, 945
AclWI GGATC 3 cut(s) 579, 666, 735
AcoI YGGCCR 1 cut(s) 942
AcsI RAATTY 5 cut(s) 64, 93, 363, 738, 1084
AfaI GTAC 2 cut(s) 824, 1041
AfiI CCNNNNNNNGG 2 cut(s) 104, 470
AflII CTTAAG 1 cut(s) 539
AflIII ACRYGT 1 cut(s) 873
AgsI TTSAA 3 cut(s) 151, 514, 582
AhlI ACTAGT 1 cut(s) 14
AjnI CCWGG 2 cut(s) 907, 1079
AjuI GAANNNNNNNTTGG 2 cut(s) 1003, 1035
AluBI AGCT 1 cut(s) 950
AluI AGCT 1 cut(s) 950
Alw26I GTCTC 3 cut(s) 95, 163, 460
AlwI GGATC 3 cut(s) 579, 666, 735
AoxI GGCC 2 cut(s) 518, 942
ApeKI GCWGC 1 cut(s) 947
ApoI RAATTY 5 cut(s) 64, 93, 363, 738, 1084
AseI ATTAAT 1 cut(s) 432
AspS9I GGNCC 2 cut(s) 905, 924
AsuHPI GGTGA 2 cut(s) 50, 638
AsuII TTCGAA 1 cut(s) 561
AvaII GGWCC 2 cut(s) 905, 924
AxyI CCTNAGG 2 cut(s) 225, 1034
BbsI GAAGAC 3 cut(s) 570, 755, 911
BbvI GCAGC 1 cut(s) 959
BcgI CGANNNNNNTGC 2 cut(s) 175, 209
BciT130I CCWGG 2 cut(s) 909, 1081
BcoDI GTCTC 3 cut(s) 95, 163, 460
BcuI ACTAGT 1 cut(s) 14
BfaI CTAG 3 cut(s) 15, 695, 759
BfrI CTTAAG 1 cut(s) 539
BfuAI ACCTGC 1 cut(s) 229
BisI GCNGC 2 cut(s) 945, 948
BlsI GCNGC 2 cut(s) 946, 949
Bme1390I CCNGG 2 cut(s) 909, 1081
Bme18I GGWCC 2 cut(s) 905, 924
BmgT120I GGNCC 2 cut(s) 905, 924
BmrFI CCNGG 2 cut(s) 909, 1081
BmrI ACTGGG 1 cut(s) 861
BmsI GCATC 2 cut(s) 488, 1025
BmuI ACTGGG 1 cut(s) 861
BoxI GACNNNNGTC 1 cut(s) 759
BpiI GAAGAC 3 cut(s) 570, 755, 911
BpmI CTGGAG 2 cut(s) 342, 930
Bpu14I TTCGAA 1 cut(s) 561
BsaBI GATNNNNATC 1 cut(s) 478
BsaJI CCNNGG 3 cut(s) 33, 714, 767
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 470
Bse1I ACTGG 3 cut(s) 208, 856, 1096
Bse21I CCTNAGG 2 cut(s) 225, 1034
Bse8I GATNNNNATC 1 cut(s) 478
BseBI CCWGG 2 cut(s) 909, 1081
BseDI CCNNGG 3 cut(s) 33, 714, 767
BseGI GGATG 2 cut(s) 817, 979
BseJI GATNNNNATC 1 cut(s) 478
BseLI CCNNNNNNNGG 2 cut(s) 104, 470
BseMII CTCAG 3 cut(s) 239, 722, 1048
BseNI ACTGG 3 cut(s) 208, 856, 1096
BseRI GAGGAG 3 cut(s) 450, 453, 748
BseXI GCAGC 1 cut(s) 959
BsgI GTGCAG 2 cut(s) 655, 828
BshFI GGCC 2 cut(s) 520, 944
BslFI GGGAC 1 cut(s) 1037
BslI CCNNNNNNNGG 2 cut(s) 104, 470
BsmAI GTCTC 3 cut(s) 95, 163, 460
BsmFI GGGAC 1 cut(s) 1037
BsnI GGCC 2 cut(s) 520, 944
Bsp119I TTCGAA 1 cut(s) 561
Bsp143I GATC 5 cut(s) 356, 584, 628, 658, 727
Bsp19I CCATGG 1 cut(s) 767
BspACI CCGC 3 cut(s) 326, 446, 945
BspANI GGCC 2 cut(s) 520, 944
BspCNI CTCAG 3 cut(s) 238, 723, 1047
BspMI ACCTGC 1 cut(s) 229
BspPI GGATC 3 cut(s) 579, 666, 735
BspT104I TTCGAA 1 cut(s) 561
BspTI CTTAAG 1 cut(s) 539
BsrBI CCGCTC 1 cut(s) 326
BsrI ACTGG 3 cut(s) 208, 856, 1096
BssECI CCNNGG 3 cut(s) 33, 714, 767
BssMI GATC 5 cut(s) 356, 584, 628, 658, 727
BssNAI GTATAC 1 cut(s) 402
BssT1I CCWWGG 3 cut(s) 33, 714, 767
Bst1107I GTATAC 1 cut(s) 402
Bst2UI CCWGG 2 cut(s) 909, 1081
Bst4CI ACNGT 2 cut(s) 393, 1051
Bst6I CTCTTC 1 cut(s) 339
BstAFI CTTAAG 1 cut(s) 539
BstAPI GCANNNNNTGC 1 cut(s) 643
BstBI TTCGAA 1 cut(s) 561
BstDEI CTNAG 3 cut(s) 225, 731, 1034
BstDSI CCRYGG 1 cut(s) 767
BstF5I GGATG 2 cut(s) 817, 979
BstKTI GATC 5 cut(s) 359, 587, 631, 661, 730
BstMAI GTCTC 3 cut(s) 95, 163, 460
BstMBI GATC 5 cut(s) 356, 584, 628, 658, 727
BstMWI GCNNNNNNNGC 2 cut(s) 503, 643
BstNI CCWGG 2 cut(s) 909, 1081
BstPAI GACNNNNGTC 1 cut(s) 759
BstSCI CCNGG 2 cut(s) 907, 1079
BstV1I GCAGC 1 cut(s) 959
BstV2I GAAGAC 3 cut(s) 570, 755, 911
BstX2I RGATCY 3 cut(s) 584, 658, 727
BstYI RGATCY 3 cut(s) 584, 658, 727
BstZ17I GTATAC 1 cut(s) 402
Bsu36I CCTNAGG 2 cut(s) 225, 1034
BsuRI GGCC 2 cut(s) 520, 944
BtgI CCRYGG 1 cut(s) 767
BtgZI GCGATG 1 cut(s) 315
BtsCI GGATG 2 cut(s) 817, 979
BtsI GCAGTG 2 cut(s) 114, 667
BtsIMutI CAGTG 2 cut(s) 114, 667
BveI ACCTGC 1 cut(s) 229
Cfr13I GGNCC 2 cut(s) 905, 924
Csp6I GTAC 2 cut(s) 823, 1040
CviAII CATG 5 cut(s) 28, 233, 371, 768, 881
CviJI RGCY 5 cut(s) 375, 520, 830, 944, 950
CviKI_1 RGCY 5 cut(s) 375, 520, 830, 944, 950
CviQI GTAC 2 cut(s) 823, 1040
DdeI CTNAG 3 cut(s) 225, 731, 1034
DpnI GATC 5 cut(s) 358, 586, 630, 660, 729
DpnII GATC 5 cut(s) 356, 584, 628, 658, 727
EaeI YGGCCR 1 cut(s) 942
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco130I CCWWGG 3 cut(s) 33, 714, 767
Eco47I GGWCC 2 cut(s) 905, 924
Eco81I CCTNAGG 2 cut(s) 225, 1034
EcoO109I RGGNCCY 1 cut(s) 905
EcoRI GAATTC 1 cut(s) 1084
EcoRII CCWGG 2 cut(s) 907, 1079
EcoT14I CCWWGG 3 cut(s) 33, 714, 767
ErhI CCWWGG 3 cut(s) 33, 714, 767
FaeI CATG 5 cut(s) 31, 236, 374, 771, 884
FalI AAGNNNNNCTT 6 cut(s) 533, 565, 819, 851, 1003, 1035
FaqI GGGAC 1 cut(s) 1037
FatI CATG 5 cut(s) 27, 232, 370, 767, 880
FblI GTMKAC 2 cut(s) 401, 972
Fnu4HI GCNGC 2 cut(s) 945, 948
FokI GGATG 2 cut(s) 824, 966
Fsp4HI GCNGC 2 cut(s) 945, 948
FspBI CTAG 3 cut(s) 15, 695, 759
GluI GCNGC 2 cut(s) 945, 948
GsuI CTGGAG 2 cut(s) 342, 930
HaeIII GGCC 2 cut(s) 520, 944
Hin1II CATG 5 cut(s) 31, 236, 374, 771, 884
HincII GTYRAC 3 cut(s) 52, 244, 270
HindII GTYRAC 3 cut(s) 52, 244, 270
HinfI GANTC 5 cut(s) 134, 187, 755, 791, 815
HpaI GTTAAC 1 cut(s) 52
HphI GGTGA 2 cut(s) 50, 638
Hpy166II GTNNAC 5 cut(s) 52, 244, 270, 402, 973
Hpy188I TCNGA 7 cut(s) 133, 286, 356, 484, 689, 732, 924
Hpy188III TCNNGA 9 cut(s) 98, 227, 321, 360, 425, 514, 530, 582, 695
Hpy8I GTNNAC 5 cut(s) 52, 244, 270, 402, 973
HpyAV CCTTC 3 cut(s) 31, 159, 769
HpyCH4III ACNGT 2 cut(s) 393, 1051
HpyCH4IV ACGT 2 cut(s) 800, 875
HpyCH4V TGCA 7 cut(s) 46, 196, 479, 497, 672, 845, 1016
HpyF10VI GCNNNNNNNGC 2 cut(s) 503, 643
HpyF3I CTNAG 3 cut(s) 225, 731, 1034
HpySE526I ACGT 2 cut(s) 800, 875
Hsp92II CATG 5 cut(s) 31, 236, 374, 771, 884
KspAI GTTAAC 1 cut(s) 52
Kzo9I GATC 5 cut(s) 356, 584, 628, 658, 727
LmnI GCTCC 1 cut(s) 323
Lsp1109I GCAGC 1 cut(s) 959
LweI GCATC 2 cut(s) 488, 1025
MaeI CTAG 3 cut(s) 15, 695, 759
MaeII ACGT 2 cut(s) 800, 875
MalI GATC 5 cut(s) 358, 586, 630, 660, 729
MbiI CCGCTC 1 cut(s) 326
MboI GATC 5 cut(s) 356, 584, 628, 658, 727
MboII GAAGA 6 cut(s) 356, 570, 755, 758, 761, 911
MfeI CAATTG 1 cut(s) 378
MflI RGATCY 3 cut(s) 584, 658, 727
MlyI GAGTC 1 cut(s) 749
MmeI TCCRAC 1 cut(s) 789
MseI TTAA 8 cut(s) 51, 90, 275, 330, 432, 540, 723, 837
MspA1I CMGCKG 1 cut(s) 950
MspCI CTTAAG 1 cut(s) 539
MspR9I CCNGG 2 cut(s) 909, 1081
MunI CAATTG 1 cut(s) 378
MvaI CCWGG 2 cut(s) 909, 1081
MwoI GCNNNNNNNGC 2 cut(s) 503, 643
NcoI CCATGG 1 cut(s) 767
NdeII GATC 5 cut(s) 356, 584, 628, 658, 727
NlaIII CATG 5 cut(s) 31, 236, 374, 771, 884
NspV TTCGAA 1 cut(s) 561
PfeI GAWTC 4 cut(s) 134, 187, 791, 815
PfoI TCCNGGA 1 cut(s) 907
PkrI GCNGC 2 cut(s) 946, 949
PleI GAGTC 1 cut(s) 749
PpsI GAGTC 1 cut(s) 749
PpuMI RGGWCCY 1 cut(s) 905
PshAI GACNNNNGTC 1 cut(s) 759
PshBI ATTAAT 1 cut(s) 432
Psp5II RGGWCCY 1 cut(s) 905
Psp6I CCWGG 2 cut(s) 907, 1079
PspGI CCWGG 2 cut(s) 907, 1079
PspPI GGNCC 2 cut(s) 905, 924
PspPPI RGGWCCY 1 cut(s) 905
PsuI RGATCY 3 cut(s) 584, 658, 727
PvuII CAGCTG 1 cut(s) 950
RsaI GTAC 2 cut(s) 824, 1041
RsaNI GTAC 2 cut(s) 823, 1040
SaqAI TTAA 8 cut(s) 51, 90, 275, 330, 432, 540, 723, 837
SatI GCNGC 2 cut(s) 945, 948
Sau3AI GATC 5 cut(s) 356, 584, 628, 658, 727
Sau96I GGNCC 2 cut(s) 905, 924
SchI GAGTC 1 cut(s) 749
ScrFI CCNGG 2 cut(s) 909, 1081
SfaNI GCATC 2 cut(s) 488, 1025
SfuI TTCGAA 1 cut(s) 561
SinI GGWCC 2 cut(s) 905, 924
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
SpeI ACTAGT 1 cut(s) 14
SsiI CCGC 3 cut(s) 326, 446, 945
SspI AATATT 1 cut(s) 127
SspMI CTAG 3 cut(s) 15, 695, 759
StyD4I CCNGG 2 cut(s) 907, 1079
StyI CCWWGG 3 cut(s) 33, 714, 767
TaaI ACNGT 2 cut(s) 393, 1051
TaiI ACGT 2 cut(s) 803, 878
TaqI TCGA 2 cut(s) 561, 612
TauI GCSGC 1 cut(s) 947
TfiI GAWTC 4 cut(s) 134, 187, 791, 815
Tru1I TTAA 8 cut(s) 51, 90, 275, 330, 432, 540, 723, 837
Tru9I TTAA 8 cut(s) 51, 90, 275, 330, 432, 540, 723, 837
TscAI CASTG 2 cut(s) 121, 674
TseI GCWGC 1 cut(s) 947
TspDTI ATGAA 5 cut(s) 203, 303, 306, 804, 869
TspGWI ACGGA 3 cut(s) 69, 810, 1048
TspRI CASTG 2 cut(s) 121, 674
Vha464I CTTAAG 1 cut(s) 539
VpaK11BI GGWCC 2 cut(s) 905, 924
VspI ATTAAT 1 cut(s) 432
XapI RAATTY 5 cut(s) 64, 93, 363, 738, 1084
XbaI TCTAGA 1 cut(s) 694
XcmI CCANNNNNNNNNTGG 2 cut(s) 595, 983
XmiI GTMKAC 2 cut(s) 401, 972
XspI CTAG 3 cut(s) 15, 695, 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.