RchiOBHm_Chr1g0330841

NLI interacting factor-like phosphatase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
20566038 .. 20567350
1313 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55995

Sequence Viewer

Length: 414 bp
ATGCTCCAATCGCACTGCACTTCTACCAGGTTCAAGACGGTGGAGAACAAGAATGAGCCCCTCGGTTTGAAAGAGCTTAGAAAATTATGGGAGAAGCTTGAGCCTGATCTTGCTTCGGCGAGAGGGGAGTACAATGAATCCAACACAATATTATTGGATGATTCTCCATATAAGGCTTTGCTCAATCCGGTGAACACCGCCATATTCCCTGATTCGTATCAGTTCAGGAACAGAGAAGATTCTTCATTAGTACCTGGAGGCAATATCCGTTCCTACCTGGAATGGTTAGCTATGGCTGAGAGTGTCCAAAAATATGTGGAACAGAATCCATTTGGTCAGCAACCCATAACGAAATTAAATCCTTCTTGGAACTTCTACAAGAGAGTTATAGGGGATGTAGTACTCCTGAGATGA

Protein Analysis

137

Amino Acids

15.82

Weight (kDa)

6.59

Isoelectric Point (pI)

57.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 198
AfaI GTAC 3 cut(s) 131, 252, 402
AgsI TTSAA 2 cut(s) 34, 70
AjnI CCWGG 3 cut(s) 26, 253, 276
AluBI AGCT 3 cut(s) 76, 97, 290
AluI AGCT 3 cut(s) 76, 97, 290
AsuHPI GGTGA 1 cut(s) 202
BanII GRGCYC 1 cut(s) 60
BciT130I CCWGG 3 cut(s) 28, 255, 278
BmcAI AGTACT 1 cut(s) 402
Bme1390I CCNGG 3 cut(s) 28, 255, 278
BmrFI CCNGG 3 cut(s) 28, 255, 278
BpmI CTGGAG 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 119
BsaBI GATNNNNATC 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 61
BsaWI WCCGGW 1 cut(s) 187
Bse8I GATNNNNATC 1 cut(s) 216
BseBI CCWGG 3 cut(s) 28, 255, 278
BseDI CCNNGG 1 cut(s) 61
BseGI GGATG 2 cut(s) 163, 400
BseJI GATNNNNATC 1 cut(s) 216
BseMII CTCAG 2 cut(s) 288, 398
BsiSI CCGG 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 1 cut(s) 106
BspACI CCGC 1 cut(s) 198
BspCNI CTCAG 2 cut(s) 289, 399
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 1 cut(s) 106
Bst2UI CCWGG 3 cut(s) 28, 255, 278
Bst4CI ACNGT 1 cut(s) 40
BstDEI CTNAG 3 cut(s) 77, 297, 407
BstF5I GGATG 2 cut(s) 163, 400
BstKTI GATC 1 cut(s) 109
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 3 cut(s) 28, 255, 278
BstSCI CCNGG 3 cut(s) 26, 253, 276
BtsCI GGATG 2 cut(s) 163, 400
BtsI GCAGTG 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 13
CsiI ACCWGGT 1 cut(s) 26
Csp6I GTAC 3 cut(s) 130, 251, 401
CviJI RGCY 7 cut(s) 58, 76, 97, 103, 176, 290, 296
CviKI_1 RGCY 7 cut(s) 58, 76, 97, 103, 176, 290, 296
CviQI GTAC 3 cut(s) 130, 251, 401
DdeI CTNAG 3 cut(s) 77, 297, 407
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 60
EcoRII CCWGG 3 cut(s) 26, 253, 276
EcoT38I GRGCYC 1 cut(s) 60
FaiI YATR 8 cut(s) 88, 169, 171, 203, 293, 315, 347, 389
FokI GGATG 2 cut(s) 170, 407
FriOI GRGCYC 1 cut(s) 60
GsuI CTGGAG 1 cut(s) 276
HapII CCGG 1 cut(s) 188
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 5 cut(s) 137, 161, 212, 239, 325
HpaII CCGG 1 cut(s) 188
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 1 cut(s) 193
Hpy188III TCNNGA 3 cut(s) 34, 226, 406
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 1 cut(s) 372
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4V TGCA 1 cut(s) 18
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 3 cut(s) 77, 297, 407
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 1 cut(s) 9
MabI ACCWGGT 1 cut(s) 26
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 2 cut(s) 234, 248
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 2 cut(s) 83, 353
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 3 cut(s) 71, 116, 251
MseI TTAA 1 cut(s) 356
MspI CCGG 1 cut(s) 188
MspR9I CCNGG 3 cut(s) 28, 255, 278
MvaI CCWGG 3 cut(s) 28, 255, 278
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 1 cut(s) 106
PfeI GAWTC 5 cut(s) 137, 161, 212, 239, 325
Psp6I CCWGG 3 cut(s) 26, 253, 276
PspGI CCWGG 3 cut(s) 26, 253, 276
RsaI GTAC 3 cut(s) 131, 252, 402
RsaNI GTAC 3 cut(s) 130, 251, 401
SaqAI TTAA 1 cut(s) 356
Sau3AI GATC 1 cut(s) 106
ScaI AGTACT 1 cut(s) 402
ScrFI CCNGG 3 cut(s) 28, 255, 278
SduI GDGCHC 1 cut(s) 60
SetI ASST 6 cut(s) 32, 78, 99, 256, 279, 292
SexAI ACCWGGT 1 cut(s) 26
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 2 cut(s) 83, 353
SsiI CCGC 1 cut(s) 198
SspI AATATT 1 cut(s) 150
StyD4I CCNGG 3 cut(s) 26, 253, 276
TaaI ACNGT 1 cut(s) 40
TasI AATT 2 cut(s) 83, 353
TatI WGTACW 2 cut(s) 129, 400
TfiI GAWTC 5 cut(s) 137, 161, 212, 239, 325
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TscAI CASTG 1 cut(s) 20
TspDTI ATGAA 2 cut(s) 150, 234
TspGWI ACGGA 1 cut(s) 257
TspRI CASTG 1 cut(s) 20
ZrmI AGTACT 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.