Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000879

Physical Location & Seq

Genomic Coordinates Forward (+)

76144526 .. 76146848

Gene Structure 2323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G048580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGATTAGGCATACTAGTTCCTTCTCCATGACCAAGGGTGAAGTGCAAGTTAACCTCTTGGCAAATTCAGCACCCCGTCCGTCCTTTGTTAAAATTCCGGAGACAGGTATGGACACTGCCAAAAATATTTCAGAATCAAGTCAAGTGTTGAAAAAGAGAACAAGAAGGAGACATAGGAGGAAACCGAATCTAATGCAAAATACTGCGGTTAAAACTAATTGTGAAGAGGACATCAGATCAGGAATTTCACATGGCTCAATTGTGAGAAAACCGTTTAGGTGTACAGGGAAAAAACTTCTTATTCTTGACATTAATGGACTTATTGCGGATATAGTCTCTCCTCCTCCAAAGGGATTTGCATCTGACATAAGGATTGCAGGACGAGCAATTTTCAAGAGGCCATACTATCTTGATTTTCTTAAGTTCTGCTTTGAGCGTTTCGAAGTGGGTGTGTGGTCTTCAAGATCCAAGAAAATTGTGGAAAGAGTGGTTGATTATCTAATGGGCGATCTAAAGCACAAGTTGCTGTTTTGTTGGGATCTATCCCACTGCACTACAACAGGGTTCAGAACTCTAGAAAATAAGCACAAGACCTTGGTGTTTAAGGATCTGAGGAGAATTTGGGAAGAAGATGACTCTGGTCTTCCATGGGAGAAGGGCGTATATAATGAATCTAATACGTTATTGTTGGATGATTCTCCGTACAAAGCCCTGCTTAATCCTGCACATACTGGGGTCTTTCCTTATCCATACACGTTTCATGGAGGGTGCGACAATGCATTAGGTCCTGGAGGTCGTCTTCGGACGTATTTGGACAAGTTGGCCGCAGCTGAAAATCTACAAGAGTTTGTAGACCAACATCCATTTGGTCAAAGACCTATTACTGAAAGAAGTGCATCTTGGGACTTTTACCTGAGGGTACTCGATACGGTGTATTCCGTAAAAACCAACCAGATAACCTGGAATTCTACTTGTAAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

327

Amino Acids

37.48

Weight (kDa)

9.51

Isoelectric Point (pI)

41.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	98 - 279	7.1e-16	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29760 AT3G29760 AT3G29760 AT3G29760 AT3G29760
fragaria_vesca	FvH4_5g13671 FvH4_5g13671 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700
malus_domestica	MD06G1203100.v1.1 MD09G1068500.v1.1 MD14G1213700.v1.1 MD17G1061400.v1.1
prunus_persica	Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.5G206600_v2.0.a1
pyrus_communis	pycom06g18090 pycom12433g00100 pycom14g17710 pycom17g06130
rosa_chinensis	RchiOBHm_Chr1g0330571 RchiOBHm_Chr1g0330791 RchiOBHm_Chr1g0330841 RchiOBHm_Chr2g0165581 RchiOBHm_Chr7g0183261 RchiOBHm_Chr7g0183271
rosa_laevigata	RLG00000005061 RLG00000021541
rosa_multiflora	Rmu_sc0000815.1_g000003 Rmu_sc0005425.1_g000020 Rmu_sc0008744.1_g000011 Rmu_sc0014529.1_g000002 Rmu_sc0018426.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085710 Rroxscaffold_3G00270610
rosa_rugosa	Rorug02G0516200 Rorug05G0496600 Rorug05G0496600 Rorug05G0496600 Rorug06G0455700
rosa_samantha	Rh1AG107500 Rh1AG107600 Rh1AG111800 Rh1CG103400 Rh1CG106100 Rh1CG107100 Rh1DG113000 Rh2AG582300 Rh2BG594500 Rh2CG564400 Rh2DG604400 Rh7AG057700 Rh7BG057500 Rh7CG059100 Rh7DG057300
rosa_wichuraiana	Rw0G004370 Rw0G016070 Rw1G009080 Rw2G048580 Rw7G004720 Rw7G004730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	852
AccIII	TCCGGA	1 cut(s)	97
AciI	CCGC	3 cut(s)	206, 326, 825
AclWI	GGATC	3 cut(s)	459, 546, 615
AcoI	YGGCCR	1 cut(s)	822
AcsI	RAATTY	5 cut(s)	64, 93, 243, 618, 964
AfaI	GTAC	3 cut(s)	283, 704, 921
AfiI	CCNNNNNNNGG	2 cut(s)	104, 350
AflII	CTTAAG	1 cut(s)	419
AflIII	ACRYGT	1 cut(s)	753
AgsI	TTSAA	3 cut(s)	151, 394, 462
AhlI	ACTAGT	1 cut(s)	14
AjnI	CCWGG	2 cut(s)	787, 959
AjuI	GAANNNNNNNTTGG	2 cut(s)	883, 915
AluBI	AGCT	1 cut(s)	830
AluI	AGCT	1 cut(s)	830
Alw26I	GTCTC	3 cut(s)	95, 163, 340
AlwI	GGATC	3 cut(s)	459, 546, 615
Aor13HI	TCCGGA	1 cut(s)	97
AoxI	GGCC	2 cut(s)	398, 822
ApeKI	GCWGC	1 cut(s)	827
ApoI	RAATTY	5 cut(s)	64, 93, 243, 618, 964
AseI	ATTAAT	1 cut(s)	312
AspS9I	GGNCC	1 cut(s)	785
AsuHPI	GGTGA	1 cut(s)	50
AsuII	TTCGAA	1 cut(s)	441
AvaII	GGWCC	1 cut(s)	785
AxyI	CCTNAGG	1 cut(s)	914
BbsI	GAAGAC	3 cut(s)	450, 635, 791
BbvI	GCAGC	1 cut(s)	839
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BciT130I	CCWGG	2 cut(s)	789, 961
BcoDI	GTCTC	3 cut(s)	95, 163, 340
BcuI	ACTAGT	1 cut(s)	14
BfaI	CTAG	2 cut(s)	15, 575
BfrI	CTTAAG	1 cut(s)	419
BisI	GCNGC	2 cut(s)	825, 828
BlsI	GCNGC	2 cut(s)	826, 829
Bme1390I	CCNGG	2 cut(s)	789, 961
Bme18I	GGWCC	1 cut(s)	785
BmgT120I	GGNCC	1 cut(s)	785
BmrFI	CCNGG	2 cut(s)	789, 961
BmrI	ACTGGG	1 cut(s)	741
BmsI	GCATC	2 cut(s)	368, 905
BmuI	ACTGGG	1 cut(s)	741
BoxI	GACNNNNGTC	1 cut(s)	639
BpiI	GAAGAC	3 cut(s)	450, 635, 791
BpmI	CTGGAG	1 cut(s)	810
Bpu14I	TTCGAA	1 cut(s)	441
BsaBI	GATNNNNATC	1 cut(s)	358
BsaJI	CCNNGG	3 cut(s)	33, 594, 647
BsaWI	WCCGGW	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 350
Bse1I	ACTGG	1 cut(s)	736
Bse21I	CCTNAGG	1 cut(s)	914
Bse8I	GATNNNNATC	1 cut(s)	358
BseAI	TCCGGA	1 cut(s)	97
BseBI	CCWGG	2 cut(s)	789, 961
BseDI	CCNNGG	3 cut(s)	33, 594, 647
BseGI	GGATG	2 cut(s)	697, 859
BseJI	GATNNNNATC	1 cut(s)	358
BseLI	CCNNNNNNNGG	2 cut(s)	104, 350
BseMII	CTCAG	2 cut(s)	602, 905
BseNI	ACTGG	1 cut(s)	736
BseRI	GAGGAG	3 cut(s)	330, 333, 628
BseXI	GCAGC	1 cut(s)	839
BsgI	GTGCAG	2 cut(s)	535, 708
BshFI	GGCC	2 cut(s)	400, 824
BsiSI	CCGG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	917
BslI	CCNNNNNNNGG	2 cut(s)	104, 350
BsmAI	GTCTC	3 cut(s)	95, 163, 340
BsmFI	GGGAC	1 cut(s)	917
BsnI	GGCC	2 cut(s)	400, 824
Bsp119I	TTCGAA	1 cut(s)	441
Bsp13I	TCCGGA	1 cut(s)	97
Bsp1407I	TGTACA	1 cut(s)	281
Bsp143I	GATC	5 cut(s)	236, 464, 508, 538, 607
Bsp19I	CCATGG	1 cut(s)	647
BspACI	CCGC	3 cut(s)	206, 326, 825
BspANI	GGCC	2 cut(s)	400, 824
BspCNI	CTCAG	2 cut(s)	603, 906
BspEI	TCCGGA	1 cut(s)	97
BspPI	GGATC	3 cut(s)	459, 546, 615
BspT104I	TTCGAA	1 cut(s)	441
BspTI	CTTAAG	1 cut(s)	419
BsrGI	TGTACA	1 cut(s)	281
BsrI	ACTGG	1 cut(s)	736
BssECI	CCNNGG	3 cut(s)	33, 594, 647
BssMI	GATC	5 cut(s)	236, 464, 508, 538, 607
BssT1I	CCWWGG	3 cut(s)	33, 594, 647
Bst2UI	CCWGG	2 cut(s)	789, 961
Bst4CI	ACNGT	2 cut(s)	273, 931
Bst6I	CTCTTC	1 cut(s)	219
BstAFI	CTTAAG	1 cut(s)	419
BstAPI	GCANNNNNTGC	1 cut(s)	523
BstAUI	TGTACA	1 cut(s)	281
BstBI	TTCGAA	1 cut(s)	441
BstDEI	CTNAG	2 cut(s)	611, 914
BstDSI	CCRYGG	1 cut(s)	647
BstF5I	GGATG	2 cut(s)	697, 859
BstKTI	GATC	5 cut(s)	239, 467, 511, 541, 610
BstMAI	GTCTC	3 cut(s)	95, 163, 340
BstMBI	GATC	5 cut(s)	236, 464, 508, 538, 607
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 383, 523
BstNI	CCWGG	2 cut(s)	789, 961
BstPAI	GACNNNNGTC	1 cut(s)	639
BstSCI	CCNGG	2 cut(s)	787, 959
BstV1I	GCAGC	1 cut(s)	839
BstV2I	GAAGAC	3 cut(s)	450, 635, 791
BstX2I	RGATCY	3 cut(s)	464, 538, 607
BstYI	RGATCY	3 cut(s)	464, 538, 607
Bsu36I	CCTNAGG	1 cut(s)	914
BsuRI	GGCC	2 cut(s)	400, 824
BtgI	CCRYGG	1 cut(s)	647
BtsCI	GGATG	2 cut(s)	697, 859
BtsI	GCAGTG	2 cut(s)	114, 547
BtsIMutI	CAGTG	2 cut(s)	114, 547
Cfr13I	GGNCC	1 cut(s)	785
Csp6I	GTAC	3 cut(s)	282, 703, 920
CviAII	CATG	4 cut(s)	28, 251, 648, 761
CviJI	RGCY	5 cut(s)	255, 400, 710, 824, 830
CviKI_1	RGCY	5 cut(s)	255, 400, 710, 824, 830
CviQI	GTAC	3 cut(s)	282, 703, 920
DdeI	CTNAG	2 cut(s)	611, 914
DpnI	GATC	5 cut(s)	238, 466, 510, 540, 609
DpnII	GATC	5 cut(s)	236, 464, 508, 538, 607
EaeI	YGGCCR	1 cut(s)	822
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Eco130I	CCWWGG	3 cut(s)	33, 594, 647
Eco47I	GGWCC	1 cut(s)	785
Eco81I	CCTNAGG	1 cut(s)	914
EcoO109I	RGGNCCY	1 cut(s)	785
EcoRI	GAATTC	1 cut(s)	964
EcoRII	CCWGG	2 cut(s)	787, 959
EcoT14I	CCWWGG	3 cut(s)	33, 594, 647
EcoT22I	ATGCAT	1 cut(s)	781
ErhI	CCWWGG	3 cut(s)	33, 594, 647
FaeI	CATG	4 cut(s)	31, 254, 651, 764
FalI	AAGNNNNNCTT	6 cut(s)	413, 445, 699, 731, 883, 915
FaqI	GGGAC	1 cut(s)	917
FatI	CATG	4 cut(s)	27, 250, 647, 760
FblI	GTMKAC	1 cut(s)	852
Fnu4HI	GCNGC	2 cut(s)	825, 828
FokI	GGATG	2 cut(s)	704, 846
Fsp4HI	GCNGC	2 cut(s)	825, 828
FspBI	CTAG	2 cut(s)	15, 575
GluI	GCNGC	2 cut(s)	825, 828
GsuI	CTGGAG	1 cut(s)	810
HaeIII	GGCC	2 cut(s)	400, 824
HapII	CCGG	1 cut(s)	98
Hin1II	CATG	4 cut(s)	31, 254, 651, 764
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HinfI	GANTC	5 cut(s)	134, 187, 635, 671, 695
HpaI	GTTAAC	1 cut(s)	52
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	3 cut(s)	52, 282, 853
Hpy188I	TCNGA	6 cut(s)	133, 236, 364, 569, 612, 804
Hpy188III	TCNNGA	7 cut(s)	98, 240, 305, 394, 410, 462, 575
Hpy8I	GTNNAC	3 cut(s)	52, 282, 853
HpyAV	CCTTC	3 cut(s)	31, 159, 649
HpyCH4III	ACNGT	2 cut(s)	273, 931
HpyCH4IV	ACGT	3 cut(s)	680, 755, 806
HpyCH4V	TGCA	8 cut(s)	46, 196, 359, 377, 552, 725, 779, 896
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 383, 523
HpyF3I	CTNAG	2 cut(s)	611, 914
HpySE526I	ACGT	3 cut(s)	680, 755, 806
Hsp92II	CATG	4 cut(s)	31, 254, 651, 764
Kpn2I	TCCGGA	1 cut(s)	97
KspAI	GTTAAC	1 cut(s)	52
Kzo9I	GATC	5 cut(s)	236, 464, 508, 538, 607
Lsp1109I	GCAGC	1 cut(s)	839
LweI	GCATC	2 cut(s)	368, 905
MaeI	CTAG	2 cut(s)	15, 575
MaeII	ACGT	3 cut(s)	680, 755, 806
MalI	GATC	5 cut(s)	238, 466, 510, 540, 609
MboI	GATC	5 cut(s)	236, 464, 508, 538, 607
MboII	GAAGA	6 cut(s)	236, 450, 635, 638, 641, 791
MfeI	CAATTG	1 cut(s)	258
MflI	RGATCY	3 cut(s)	464, 538, 607
MluCI	AATT	9 cut(s)	64, 93, 217, 243, 258, 387, 474, 618, 964
MlyI	GAGTC	1 cut(s)	629
MmeI	TCCRAC	1 cut(s)	669
Mph1103I	ATGCAT	1 cut(s)	781
MroI	TCCGGA	1 cut(s)	97
MseI	TTAA	7 cut(s)	51, 90, 210, 312, 420, 603, 717
MspA1I	CMGCKG	1 cut(s)	830
MspCI	CTTAAG	1 cut(s)	419
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	2 cut(s)	789, 961
MunI	CAATTG	1 cut(s)	258
MvaI	CCWGG	2 cut(s)	789, 961
MwoI	GCNNNNNNNGC	3 cut(s)	68, 383, 523
NcoI	CCATGG	1 cut(s)	647
NdeII	GATC	5 cut(s)	236, 464, 508, 538, 607
NlaIII	CATG	4 cut(s)	31, 254, 651, 764
NsiI	ATGCAT	1 cut(s)	781
NspV	TTCGAA	1 cut(s)	441
PfeI	GAWTC	4 cut(s)	134, 187, 671, 695
PfoI	TCCNGGA	1 cut(s)	787
PkrI	GCNGC	2 cut(s)	826, 829
PleI	GAGTC	1 cut(s)	629
PpsI	GAGTC	1 cut(s)	629
PpuMI	RGGWCCY	1 cut(s)	785
PshAI	GACNNNNGTC	1 cut(s)	639
PshBI	ATTAAT	1 cut(s)	312
Psp5II	RGGWCCY	1 cut(s)	785
Psp6I	CCWGG	2 cut(s)	787, 959
PspGI	CCWGG	2 cut(s)	787, 959
PspPI	GGNCC	1 cut(s)	785
PspPPI	RGGWCCY	1 cut(s)	785
PsuI	RGATCY	3 cut(s)	464, 538, 607
PvuII	CAGCTG	1 cut(s)	830
RsaI	GTAC	3 cut(s)	283, 704, 921
RsaNI	GTAC	3 cut(s)	282, 703, 920
SaqAI	TTAA	7 cut(s)	51, 90, 210, 312, 420, 603, 717
SatI	GCNGC	2 cut(s)	825, 828
Sau3AI	GATC	5 cut(s)	236, 464, 508, 538, 607
Sau96I	GGNCC	1 cut(s)	785
SchI	GAGTC	1 cut(s)	629
ScrFI	CCNGG	2 cut(s)	789, 961
SfaNI	GCATC	2 cut(s)	368, 905
SfuI	TTCGAA	1 cut(s)	441
SinI	GGWCC	1 cut(s)	785
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
SpeI	ACTAGT	1 cut(s)	14
Sse9I	AATT	9 cut(s)	64, 93, 217, 243, 258, 387, 474, 618, 964
SsiI	CCGC	3 cut(s)	206, 326, 825
SspI	AATATT	1 cut(s)	127
SspMI	CTAG	2 cut(s)	15, 575
StyD4I	CCNGG	2 cut(s)	787, 959
StyI	CCWWGG	3 cut(s)	33, 594, 647
TaaI	ACNGT	2 cut(s)	273, 931
TaiI	ACGT	3 cut(s)	683, 758, 809
TaqI	TCGA	2 cut(s)	441, 924
TasI	AATT	9 cut(s)	64, 93, 217, 243, 258, 387, 474, 618, 964
TatI	WGTACW	1 cut(s)	281
TauI	GCSGC	1 cut(s)	827
TfiI	GAWTC	4 cut(s)	134, 187, 671, 695
Tru1I	TTAA	7 cut(s)	51, 90, 210, 312, 420, 603, 717
Tru9I	TTAA	7 cut(s)	51, 90, 210, 312, 420, 603, 717
TscAI	CASTG	2 cut(s)	121, 554
TseI	GCWGC	1 cut(s)	827
TspDTI	ATGAA	2 cut(s)	684, 749
TspGWI	ACGGA	3 cut(s)	69, 690, 928
TspRI	CASTG	2 cut(s)	121, 554
Vha464I	CTTAAG	1 cut(s)	419
VpaK11BI	GGWCC	1 cut(s)	785
VspI	ATTAAT	1 cut(s)	312
XapI	RAATTY	5 cut(s)	64, 93, 243, 618, 964
XbaI	TCTAGA	1 cut(s)	574
XcmI	CCANNNNNNNNNTGG	2 cut(s)	475, 863
XmiI	GTMKAC	1 cut(s)	852
XspI	CTAG	2 cut(s)	15, 575
Zsp2I	ATGCAT	1 cut(s)	781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.