Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000879

Physical Location & Seq

Genomic Coordinates Reverse (-)

4213351 .. 4216708

Gene Structure 3358 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16350

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1476 bp

ATGGCGGTGGAAGATTTGTGCCCTCCGTCTTCTGAAATTTGCACAGTACCGAATTCTGAGAGTCCTGAACCAGATGTGGAGCTGGGTTGTTCACGGAAAAAGAAGAAAAATAAGAAGAAAAGGTGTAAACTTGAAAGCAATGATAAGAGTTGTGAAAGTCCCTCCCTACAGTCTCAATTTGTACAACTCTCAGATCAAGAAGCACCACAACCACTTACAGAGAAAAGTAATACAATAACAGATTCAGAAAATCCCCAATCAAATGTGGAGCCGAGTCTTTCAACAAAAAAGAAGAAGAAGAAGAAAGGGTCTAGAACCACTGAGACCAATGATACAAGTTGTGAAAGTCCCTCCCAACAGCCTCAACTTGTACAGCTTTCAGATCAACAAGCACCGCAACCACTTGCTGAGAAAATTTCTACAATAACAGATTCAGAGAGTCGCCAGTCAAATGTGGAGCTGAGTCTTTCACAAAATAAGAAGAAGAAGAAGAATAAGAGGAAGAACAAGAAAGGGTGTAAAACCCCTGAGACAAATGATAAAAGTTGTGAAAGTCCCTCTATACAGCCTCAACTTGTACAAGCAACAGATCAAGAGGTAGAAGTGCCACAACGCATTGAGGCCGTACAGCCTCAACTTGCACAAGTGACGGATCAAAAGCTAGAAGTGCCACAAACCATTGAGGATTCGAGTTTCTCAGTGAAAACCAAGAAAAGGAATGGGAAGAAAAGCCGTAAACCCCATGACTGTAATGATGAAGTGTGCGGCGTTTCTGTTGGTACTTCTGTTATGGAAAGTAATATGCCAGCAGTAGATCCATATATAAAGCCTTCTGTTGAAATATCATTGGAGCAGCTTGTTGCGGAGCCACTTGTGGAGGGAATGAGTACAACAGCAAACTCAAAAAGTCCCAAACCCAATGCAGATTTTGGCTGCTCACAAGAAATGAAGAAAAAGAAGCGGAAGAGAAGCCACAAAACCAGTGAGTATAAAGAGCTATTAGTGGAAACAATGATGCCAGAAGCAGATCCATCTTTTCAGCCTTCTATTGCAATGTTCTCTGAACAAGAACTAGAGGTGTCACAACCACTTAATGTTGATGCAGAATCACTTGTGGAGGGAATGAGCACAACAATAAACTCAGAAAGGCCCAGGCCGAATGCAGATTTTAACTGCTCACAAGAAACAAAGAAGAAAAAGCGAAAGAGAGGGAACAAAACCAGTGATAGTAAAGAGGTATTAGTGGAACCAATGTTGCCAGAAGCAGAGTCATCTCTTCGGCCTTCTCTTACAATGTTATCTGAGCAAGAACTAGATGTGCCACAACCACTTAATGCTGATGCAGAACCACTTGTGGAGGGAATGAGCACAACAATAAACTCGGAAAGGGCAATGCAGATTTTACCTGCTCACAAGAAACAAAAAAGAAAAAGCAAAAGAGAGGGAGCAAAACCAGTGAACATAAAGAGCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

491

Amino Acids

54.48

Weight (kDa)

8.42

Isoelectric Point (pI)

72.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29760 AT3G29760 AT3G29760 AT3G29760 AT3G29760
fragaria_vesca	FvH4_5g13671 FvH4_5g13671 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700
malus_domestica	MD06G1203100.v1.1 MD09G1068500.v1.1 MD14G1213700.v1.1 MD17G1061400.v1.1
prunus_persica	Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.5G206600_v2.0.a1
pyrus_communis	pycom06g18090 pycom12433g00100 pycom14g17710 pycom17g06130
rosa_chinensis	RchiOBHm_Chr1g0330571 RchiOBHm_Chr1g0330791 RchiOBHm_Chr1g0330841 RchiOBHm_Chr2g0165581 RchiOBHm_Chr7g0183261 RchiOBHm_Chr7g0183271
rosa_laevigata	RLG00000005061 RLG00000021541
rosa_multiflora	Rmu_sc0000815.1_g000003 Rmu_sc0005425.1_g000020 Rmu_sc0008744.1_g000011 Rmu_sc0014529.1_g000002 Rmu_sc0018426.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085710 Rroxscaffold_3G00270610
rosa_rugosa	Rorug02G0516200 Rorug05G0496600 Rorug05G0496600 Rorug05G0496600 Rorug06G0455700
rosa_samantha	Rh1AG107500 Rh1AG107600 Rh1AG111800 Rh1CG103400 Rh1CG106100 Rh1CG107100 Rh1DG113000 Rh2AG582300 Rh2BG594500 Rh2CG564400 Rh2DG604400 Rh7AG057700 Rh7BG057500 Rh7CG059100 Rh7DG057300
rosa_wichuraiana	Rw0G004370 Rw0G016070 Rw1G009080 Rw2G048580 Rw7G004720 Rw7G004730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1414
AciI	CCGC	5 cut(s)	5, 395, 765, 863, 961
AclWI	GGATC	3 cut(s)	660, 809, 1022
AcsI	RAATTY	3 cut(s)	36, 52, 414
AfaI	GTAC	7 cut(s)	48, 183, 372, 579, 627, 781, 889
AfiI	CCNNNNNNNGG	1 cut(s)	714
AgsI	TTSAA	3 cut(s)	134, 282, 839
AjnI	CCWGG	1 cut(s)	1151
AluBI	AGCT	7 cut(s)	82, 376, 460, 661, 856, 997, 1470
AluI	AGCT	7 cut(s)	82, 376, 460, 661, 856, 997, 1470
Alw21I	GWGCWC	3 cut(s)	1130, 1370, 1472
Alw26I	GTCTC	3 cut(s)	177, 317, 524
AlwI	GGATC	3 cut(s)	660, 809, 1022
AoxI	GGCC	4 cut(s)	621, 1148, 1154, 1280
ApeKI	GCWGC	2 cut(s)	853, 933
ApoI	RAATTY	3 cut(s)	36, 52, 414
AspS9I	GGNCC	1 cut(s)	1149
BaeGI	GKGCMC	1 cut(s)	23
BaeI	ACNNNNGTAYC	2 cut(s)	771, 804
BanII	GRGCYC	1 cut(s)	1472
BbsI	GAAGAC	1 cut(s)	21
Bbv12I	GWGCWC	3 cut(s)	1130, 1370, 1472
BbvI	GCAGC	2 cut(s)	865, 920
BccI	CCATC	1 cut(s)	1039
BceAI	ACGGC	2 cut(s)	608, 717
BciT130I	CCWGG	1 cut(s)	1153
BcoDI	GTCTC	3 cut(s)	177, 317, 524
BfaI	CTAG	4 cut(s)	312, 662, 1073, 1313
BfmI	CTRYAG	1 cut(s)	167
BfuAI	ACCTGC	1 cut(s)	1414
BisI	GCNGC	3 cut(s)	766, 854, 934
BlsI	GCNGC	3 cut(s)	767, 855, 935
Bme1390I	CCNGG	1 cut(s)	1153
BmgT120I	GGNCC	1 cut(s)	1149
BmiI	GGNNCC	3 cut(s)	270, 867, 1248
BmrFI	CCNGG	1 cut(s)	1153
BmsI	GCATC	3 cut(s)	1005, 1090, 1330
BpiI	GAAGAC	1 cut(s)	21
BsaI	GGTCTC	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	1151
Bsc4I	CCNNNNNNNGG	1 cut(s)	714
Bse1I	ACTGG	4 cut(s)	445, 981, 1221, 1454
Bse3DI	GCAATG	3 cut(s)	145, 1059, 1398
BseBI	CCWGG	1 cut(s)	1153
BseDI	CCNNGG	1 cut(s)	1151
BseLI	CCNNNNNNNGG	1 cut(s)	714
BseMI	GCAATG	3 cut(s)	145, 1059, 1398
BseMII	CTCAG	9 cut(s)	48, 204, 312, 399, 452, 519, 711, 1155, 1293
BseNI	ACTGG	4 cut(s)	445, 981, 1221, 1454
BseSI	GKGCMC	1 cut(s)	23
BseXI	GCAGC	2 cut(s)	865, 920
BseYI	CCCAGC	1 cut(s)	82
BshFI	GGCC	4 cut(s)	623, 1150, 1156, 1282
BsiHKAI	GWGCWC	3 cut(s)	1130, 1370, 1472
BslFI	GGGAC	4 cut(s)	144, 333, 540, 894
BslI	CCNNNNNNNGG	1 cut(s)	714
BsmAI	GTCTC	3 cut(s)	177, 317, 524
BsmFI	GGGAC	4 cut(s)	144, 333, 540, 894
BsmI	GAATGC	1 cut(s)	1165
BsnI	GGCC	4 cut(s)	623, 1150, 1156, 1282
Bso31I	GGTCTC	1 cut(s)	317
Bsp1286I	GDGCHC	4 cut(s)	23, 1130, 1370, 1472
Bsp1407I	TGTACA	3 cut(s)	181, 370, 577
Bsp143I	GATC	6 cut(s)	193, 382, 589, 652, 814, 1027
BspACI	CCGC	5 cut(s)	5, 395, 765, 863, 961
BspANI	GGCC	4 cut(s)	623, 1150, 1156, 1282
BspCNI	CTCAG	9 cut(s)	49, 203, 313, 400, 453, 520, 710, 1154, 1294
BspLI	GGNNCC	3 cut(s)	270, 867, 1248
BspMI	ACCTGC	1 cut(s)	1414
BspPI	GGATC	3 cut(s)	660, 809, 1022
BspTNI	GGTCTC	1 cut(s)	317
BsrDI	GCAATG	3 cut(s)	145, 1059, 1398
BsrGI	TGTACA	3 cut(s)	181, 370, 577
BsrI	ACTGG	4 cut(s)	445, 981, 1221, 1454
BssECI	CCNNGG	1 cut(s)	1151
BssMI	GATC	6 cut(s)	193, 382, 589, 652, 814, 1027
Bst2UI	CCWGG	1 cut(s)	1153
Bst4CI	ACNGT	3 cut(s)	46, 171, 749
Bst6I	CTCTTC	2 cut(s)	959, 1281
BstAUI	TGTACA	3 cut(s)	181, 370, 577
BstC8I	GCNNGC	1 cut(s)	807
BstKTI	GATC	6 cut(s)	196, 385, 592, 655, 817, 1030
BstMAI	GTCTC	3 cut(s)	177, 317, 524
BstMBI	GATC	6 cut(s)	193, 382, 589, 652, 814, 1027
BstMWI	GCNNNNNNNGC	1 cut(s)	667
BstNI	CCWGG	1 cut(s)	1153
BstSCI	CCNGG	1 cut(s)	1151
BstSFI	CTRYAG	1 cut(s)	167
BstSLI	GKGCMC	1 cut(s)	23
BstV1I	GCAGC	2 cut(s)	865, 920
BstV2I	GAAGAC	1 cut(s)	21
BstX2I	RGATCY	2 cut(s)	814, 1027
BstYI	RGATCY	2 cut(s)	814, 1027
BsuRI	GGCC	4 cut(s)	623, 1150, 1156, 1282
BtsIMutI	CAGTG	5 cut(s)	318, 705, 988, 1228, 1461
BveI	ACCTGC	1 cut(s)	1414
Cac8I	GCNNGC	1 cut(s)	807
Cfr13I	GGNCC	1 cut(s)	1149
Csp6I	GTAC	7 cut(s)	47, 182, 371, 578, 626, 780, 888
CviAII	CATG	1 cut(s)	743
CviQI	GTAC	7 cut(s)	47, 182, 371, 578, 626, 780, 888
DpnI	GATC	6 cut(s)	195, 384, 591, 654, 816, 1029
DpnII	GATC	6 cut(s)	193, 382, 589, 652, 814, 1027
Eam1104I	CTCTTC	2 cut(s)	959, 1281
EarI	CTCTTC	2 cut(s)	959, 1281
Ecl136II	GAGCTC	1 cut(s)	1470
Eco24I	GRGCYC	1 cut(s)	1472
Eco31I	GGTCTC	1 cut(s)	317
Eco53kI	GAGCTC	1 cut(s)	1470
EcoICRI	GAGCTC	1 cut(s)	1470
EcoRI	GAATTC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	1151
EcoT38I	GRGCYC	1 cut(s)	1472
FaeI	CATG	1 cut(s)	746
FaiI	YATR	9 cut(s)	563, 744, 791, 803, 820, 822, 824, 990, 1463
FaqI	GGGAC	4 cut(s)	144, 333, 540, 894
FatI	CATG	1 cut(s)	742
Fnu4HI	GCNGC	3 cut(s)	766, 854, 934
FriOI	GRGCYC	1 cut(s)	1472
Fsp4HI	GCNGC	3 cut(s)	766, 854, 934
FspBI	CTAG	4 cut(s)	312, 662, 1073, 1313
GluI	GCNGC	3 cut(s)	766, 854, 934
GsaI	CCCAGC	1 cut(s)	86
HaeIII	GGCC	4 cut(s)	623, 1150, 1156, 1282
Hin1II	CATG	1 cut(s)	746
HinfI	GANTC	9 cut(s)	61, 242, 274, 431, 439, 463, 686, 1106, 1268
Hpy166II	GTNNAC	4 cut(s)	92, 128, 737, 1459
Hpy188III	TCNNGA	4 cut(s)	65, 197, 312, 593
Hpy8I	GTNNAC	4 cut(s)	92, 128, 737, 1459
HpyAV	CCTTC	3 cut(s)	840, 1053, 1293
HpyCH4III	ACNGT	3 cut(s)	46, 171, 749
HpyCH4V	TGCA	8 cut(s)	42, 641, 923, 1052, 1103, 1163, 1343, 1396
HpyF10VI	GCNNNNNNNGC	1 cut(s)	667
Hsp92II	CATG	1 cut(s)	746
Kzo9I	GATC	6 cut(s)	193, 382, 589, 652, 814, 1027
LmnI	GCTCC	6 cut(s)	79, 268, 457, 850, 865, 1445
Lsp1109I	GCAGC	2 cut(s)	865, 920
LweI	GCATC	3 cut(s)	1005, 1090, 1330
MaeI	CTAG	4 cut(s)	312, 662, 1073, 1313
MaeIII	GTNAC	2 cut(s)	646, 1080
MalI	GATC	6 cut(s)	195, 384, 591, 654, 816, 1029
MboI	GATC	6 cut(s)	193, 382, 589, 652, 814, 1027
MflI	RGATCY	2 cut(s)	814, 1027
MhlI	GDGCHC	4 cut(s)	23, 1130, 1370, 1472
MluCI	AATT	4 cut(s)	36, 52, 176, 414
MlyI	GAGTC	5 cut(s)	70, 283, 448, 472, 1277
MseI	TTAA	3 cut(s)	1092, 1170, 1332
MspR9I	CCNGG	1 cut(s)	1153
Mva1269I	GAATGC	1 cut(s)	1165
MvaI	CCWGG	1 cut(s)	1153
MwoI	GCNNNNNNNGC	1 cut(s)	667
NdeII	GATC	6 cut(s)	193, 382, 589, 652, 814, 1027
NlaIII	CATG	1 cut(s)	746
NlaIV	GGNNCC	3 cut(s)	270, 867, 1248
NmeAIII	GCCGAG	1 cut(s)	297
NmuCI	GTSAC	2 cut(s)	646, 1080
PctI	GAATGC	1 cut(s)	1165
PfeI	GAWTC	4 cut(s)	242, 431, 686, 1106
PkrI	GCNGC	3 cut(s)	767, 855, 935
PleI	GAGTC	5 cut(s)	69, 282, 447, 471, 1276
PpsI	GAGTC	5 cut(s)	69, 282, 447, 471, 1276
Psp124BI	GAGCTC	1 cut(s)	1472
Psp6I	CCWGG	1 cut(s)	1151
PspFI	CCCAGC	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	1151
PspN4I	GGNNCC	3 cut(s)	270, 867, 1248
PspPI	GGNCC	1 cut(s)	1149
PsuI	RGATCY	2 cut(s)	814, 1027
RsaI	GTAC	7 cut(s)	48, 183, 372, 579, 627, 781, 889
RsaNI	GTAC	7 cut(s)	47, 182, 371, 578, 626, 780, 888
SacI	GAGCTC	1 cut(s)	1472
SaqAI	TTAA	3 cut(s)	1092, 1170, 1332
SatI	GCNGC	3 cut(s)	766, 854, 934
Sau3AI	GATC	6 cut(s)	193, 382, 589, 652, 814, 1027
Sau96I	GGNCC	1 cut(s)	1149
SchI	GAGTC	5 cut(s)	70, 283, 448, 472, 1277
ScrFI	CCNGG	1 cut(s)	1153
SduI	GDGCHC	4 cut(s)	23, 1130, 1370, 1472
SfaNI	GCATC	3 cut(s)	1005, 1090, 1330
SfcI	CTRYAG	1 cut(s)	167
Sse9I	AATT	4 cut(s)	36, 52, 176, 414
SsiI	CCGC	5 cut(s)	5, 395, 765, 863, 961
SspMI	CTAG	4 cut(s)	312, 662, 1073, 1313
SstI	GAGCTC	1 cut(s)	1472
StyD4I	CCNGG	1 cut(s)	1151
TaaI	ACNGT	3 cut(s)	46, 171, 749
TaqI	TCGA	1 cut(s)	689
TasI	AATT	4 cut(s)	36, 52, 176, 414
TatI	WGTACW	4 cut(s)	181, 370, 577, 887
TauI	GCSGC	1 cut(s)	768
TfiI	GAWTC	4 cut(s)	242, 431, 686, 1106
Tru1I	TTAA	3 cut(s)	1092, 1170, 1332
Tru9I	TTAA	3 cut(s)	1092, 1170, 1332
TscAI	CASTG	5 cut(s)	325, 705, 988, 1228, 1461
TseFI	GTSAC	2 cut(s)	646, 1080
TseI	GCWGC	2 cut(s)	853, 933
Tsp45I	GTSAC	2 cut(s)	646, 1080
TspDTI	ATGAA	2 cut(s)	771, 962
TspGWI	ACGGA	3 cut(s)	15, 109, 665
TspRI	CASTG	5 cut(s)	325, 705, 988, 1228, 1461
XapI	RAATTY	3 cut(s)	36, 52, 414
XbaI	TCTAGA	1 cut(s)	311
XspI	CTAG	4 cut(s)	312, 662, 1073, 1313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.