Rh2CG564400

FCP1 homology domain-containing protein C1271.03c-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000879
Physical Location & Seq
Forward (+)
74555734 .. 74560571
4838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG564400.1

Sequence Viewer

Length: 882 bp
ATGATTAGGCATACTAGTTCCTTCTCCATGACCAAGGGTGAAGTGCAAGTTAACCTCTTGGCAAATTCAGCACCCCGTCCGTCCTTTGTTAAAATTCCGGAGACAGGTATGGACACTGCCAAAAATATTTCAGAATCAAGTCAAGTGTTGAAAAAGAGAACAAGAAGGAGACATAGGAGGAAACCGAATCTAATGCAAAATACTGGCGTAGTTCATAATTTGCCTCAGGAACATGGGCAGGTTGACACTAAATATATAAAAAGATTGTCAACTTTAAGTTTATCAGATGAAAGAGGTAGCGATGTATTAGTTATTTCATCTGGAGCGGTTAAAACTAATTGTGAAGAGGACATCAGATCAGGAATTTCACATGGCTCAATTGTGAGAAAACCGTTTACGTATACAGGGAAAAAACTTCTTATTCTTGACATTAATGGACTTATTGCGGATATAGTCTCTCCTCCTCCAAAGGGATTTGCATCTGACATAAGGATTGCAGGACGAGCAATTTTCAAGAGGCCATACTATCTTGATTTTCTTAAGTTCTGCTTTGAGCGTTTCGAAGTGGGTGTGTGGTCTTCAAGATCCAAGAAAATTGTGGAAAGAGTGGTTGATTATCTAATGGGCGATCTAAAGCACAAGTTGCTGTTTTGTTGGGATCTATCCCACTGCACTACAACAGGGTTCAGAACTCTAGAAAATAAGCACAAGACCTTGGTGTTTAAGGATCTGAGGAGAATTTGGGAAGAAGATGACTCTGGTCTTCCATGGGAGAAGGGCGTATATGATGAATCTAATACGTTATTGTTGGATGATTCTCCGTACAAAGCCCTGCTTAATCCTGTAAGATTTCATTTTATCTTCTTGGTTGATTGGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NIF

Protein Analysis

293

Amino Acids

33.57

Weight (kDa)

9.53

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 138 - 282 1.9e-14 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 229
AccBSI CCGCTC 1 cut(s) 326
AccI GTMKAC 1 cut(s) 401
AccIII TCCGGA 1 cut(s) 97
AciI CCGC 2 cut(s) 326, 446
AclWI GGATC 3 cut(s) 579, 666, 735
AcsI RAATTY 4 cut(s) 64, 93, 363, 738
AfaI GTAC 1 cut(s) 824
AfiI CCNNNNNNNGG 2 cut(s) 104, 470
AflII CTTAAG 1 cut(s) 539
AgsI TTSAA 3 cut(s) 151, 514, 582
AhlI ACTAGT 1 cut(s) 14
Alw26I GTCTC 3 cut(s) 95, 163, 460
AlwI GGATC 3 cut(s) 579, 666, 735
Aor13HI TCCGGA 1 cut(s) 97
AoxI GGCC 2 cut(s) 518, 876
ApoI RAATTY 4 cut(s) 64, 93, 363, 738
AseI ATTAAT 1 cut(s) 432
AspS9I GGNCC 1 cut(s) 876
AsuHPI GGTGA 1 cut(s) 50
AsuII TTCGAA 1 cut(s) 561
AxyI CCTNAGG 1 cut(s) 225
BbsI GAAGAC 2 cut(s) 570, 755
BcgI CGANNNNNNTGC 2 cut(s) 175, 209
BcoDI GTCTC 3 cut(s) 95, 163, 460
BcuI ACTAGT 1 cut(s) 14
BfaI CTAG 2 cut(s) 15, 695
BfrI CTTAAG 1 cut(s) 539
BfuAI ACCTGC 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 876
BmsI GCATC 1 cut(s) 488
BoxI GACNNNNGTC 1 cut(s) 759
BpiI GAAGAC 2 cut(s) 570, 755
BpmI CTGGAG 1 cut(s) 342
Bpu14I TTCGAA 1 cut(s) 561
BsaAI YACGTR 1 cut(s) 399
BsaBI GATNNNNATC 1 cut(s) 478
BsaJI CCNNGG 3 cut(s) 33, 714, 767
BsaWI WCCGGW 1 cut(s) 97
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 470
Bse1I ACTGG 1 cut(s) 208
Bse21I CCTNAGG 1 cut(s) 225
Bse8I GATNNNNATC 1 cut(s) 478
BseAI TCCGGA 1 cut(s) 97
BseDI CCNNGG 3 cut(s) 33, 714, 767
BseGI GGATG 1 cut(s) 817
BseJI GATNNNNATC 1 cut(s) 478
BseLI CCNNNNNNNGG 2 cut(s) 104, 470
BseMII CTCAG 2 cut(s) 239, 722
BseNI ACTGG 1 cut(s) 208
BseRI GAGGAG 3 cut(s) 450, 453, 748
BsgI GTGCAG 1 cut(s) 655
BshFI GGCC 2 cut(s) 520, 878
BsiSI CCGG 1 cut(s) 98
BslI CCNNNNNNNGG 2 cut(s) 104, 470
BsmAI GTCTC 3 cut(s) 95, 163, 460
BsnI GGCC 2 cut(s) 520, 878
Bsp119I TTCGAA 1 cut(s) 561
Bsp13I TCCGGA 1 cut(s) 97
Bsp143I GATC 5 cut(s) 356, 584, 628, 658, 727
Bsp19I CCATGG 1 cut(s) 767
BspACI CCGC 2 cut(s) 326, 446
BspANI GGCC 2 cut(s) 520, 878
BspCNI CTCAG 2 cut(s) 238, 723
BspEI TCCGGA 1 cut(s) 97
BspMI ACCTGC 1 cut(s) 229
BspPI GGATC 3 cut(s) 579, 666, 735
BspT104I TTCGAA 1 cut(s) 561
BspTI CTTAAG 1 cut(s) 539
BsrBI CCGCTC 1 cut(s) 326
BsrI ACTGG 1 cut(s) 208
BssECI CCNNGG 3 cut(s) 33, 714, 767
BssMI GATC 5 cut(s) 356, 584, 628, 658, 727
BssNAI GTATAC 1 cut(s) 402
BssT1I CCWWGG 3 cut(s) 33, 714, 767
Bst1107I GTATAC 1 cut(s) 402
Bst4CI ACNGT 1 cut(s) 393
Bst6I CTCTTC 1 cut(s) 339
BstAFI CTTAAG 1 cut(s) 539
BstAPI GCANNNNNTGC 1 cut(s) 643
BstBAI YACGTR 1 cut(s) 399
BstBI TTCGAA 1 cut(s) 561
BstDEI CTNAG 2 cut(s) 225, 731
BstDSI CCRYGG 1 cut(s) 767
BstF5I GGATG 1 cut(s) 817
BstKTI GATC 5 cut(s) 359, 587, 631, 661, 730
BstMAI GTCTC 3 cut(s) 95, 163, 460
BstMBI GATC 5 cut(s) 356, 584, 628, 658, 727
BstMWI GCNNNNNNNGC 3 cut(s) 68, 503, 643
BstPAI GACNNNNGTC 1 cut(s) 759
BstSNI TACGTA 1 cut(s) 399
BstV2I GAAGAC 2 cut(s) 570, 755
BstX2I RGATCY 3 cut(s) 584, 658, 727
BstYI RGATCY 3 cut(s) 584, 658, 727
BstZ17I GTATAC 1 cut(s) 402
Bsu36I CCTNAGG 1 cut(s) 225
BsuRI GGCC 2 cut(s) 520, 878
BtgI CCRYGG 1 cut(s) 767
BtgZI GCGATG 1 cut(s) 315
BtsCI GGATG 1 cut(s) 817
BtsI GCAGTG 2 cut(s) 114, 667
BtsIMutI CAGTG 2 cut(s) 114, 667
BveI ACCTGC 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 876
Csp6I GTAC 1 cut(s) 823
CviAII CATG 4 cut(s) 28, 233, 371, 768
CviJI RGCY 4 cut(s) 375, 520, 830, 878
CviKI_1 RGCY 4 cut(s) 375, 520, 830, 878
CviQI GTAC 1 cut(s) 823
DdeI CTNAG 2 cut(s) 225, 731
DpnI GATC 5 cut(s) 358, 586, 630, 660, 729
DpnII GATC 5 cut(s) 356, 584, 628, 658, 727
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco105I TACGTA 1 cut(s) 399
Eco130I CCWWGG 3 cut(s) 33, 714, 767
Eco81I CCTNAGG 1 cut(s) 225
EcoT14I CCWWGG 3 cut(s) 33, 714, 767
ErhI CCWWGG 3 cut(s) 33, 714, 767
FaeI CATG 4 cut(s) 31, 236, 374, 771
FalI AAGNNNNNCTT 4 cut(s) 533, 565, 819, 851
FatI CATG 4 cut(s) 27, 232, 370, 767
FblI GTMKAC 1 cut(s) 401
FokI GGATG 1 cut(s) 824
FspBI CTAG 2 cut(s) 15, 695
GsuI CTGGAG 1 cut(s) 342
HaeIII GGCC 2 cut(s) 520, 878
HapII CCGG 1 cut(s) 98
Hin1II CATG 4 cut(s) 31, 236, 374, 771
HincII GTYRAC 3 cut(s) 52, 244, 270
HindII GTYRAC 3 cut(s) 52, 244, 270
HinfI GANTC 5 cut(s) 134, 187, 755, 791, 815
HpaI GTTAAC 1 cut(s) 52
HpaII CCGG 1 cut(s) 98
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 5 cut(s) 52, 244, 270, 396, 402
Hpy188I TCNGA 6 cut(s) 133, 286, 356, 484, 689, 732
Hpy188III TCNNGA 9 cut(s) 98, 227, 321, 360, 425, 514, 530, 582, 695
Hpy8I GTNNAC 5 cut(s) 52, 244, 270, 396, 402
HpyAV CCTTC 3 cut(s) 31, 159, 769
HpyCH4III ACNGT 1 cut(s) 393
HpyCH4IV ACGT 2 cut(s) 398, 800
HpyCH4V TGCA 5 cut(s) 46, 196, 479, 497, 672
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 503, 643
HpyF3I CTNAG 2 cut(s) 225, 731
HpySE526I ACGT 2 cut(s) 398, 800
Hsp92II CATG 4 cut(s) 31, 236, 374, 771
Kpn2I TCCGGA 1 cut(s) 97
KspAI GTTAAC 1 cut(s) 52
Kzo9I GATC 5 cut(s) 356, 584, 628, 658, 727
LmnI GCTCC 1 cut(s) 323
LweI GCATC 1 cut(s) 488
MaeI CTAG 2 cut(s) 15, 695
MaeII ACGT 2 cut(s) 398, 800
MalI GATC 5 cut(s) 358, 586, 630, 660, 729
MbiI CCGCTC 1 cut(s) 326
MboI GATC 5 cut(s) 356, 584, 628, 658, 727
MboII GAAGA 6 cut(s) 356, 570, 755, 758, 761, 853
MfeI CAATTG 1 cut(s) 378
MflI RGATCY 3 cut(s) 584, 658, 727
MluCI AATT 9 cut(s) 64, 93, 217, 337, 363, 378, 507, 594, 738
MlyI GAGTC 1 cut(s) 749
MmeI TCCRAC 1 cut(s) 789
MnlI CCTC 9 cut(s) 65, 171, 234, 287, 340, 471, 474, 510, 726
MroI TCCGGA 1 cut(s) 97
MseI TTAA 8 cut(s) 51, 90, 275, 330, 432, 540, 723, 837
MspCI CTTAAG 1 cut(s) 539
MspI CCGG 1 cut(s) 98
MunI CAATTG 1 cut(s) 378
MwoI GCNNNNNNNGC 3 cut(s) 68, 503, 643
NcoI CCATGG 1 cut(s) 767
NdeII GATC 5 cut(s) 356, 584, 628, 658, 727
NlaIII CATG 4 cut(s) 31, 236, 374, 771
NspV TTCGAA 1 cut(s) 561
PfeI GAWTC 4 cut(s) 134, 187, 791, 815
PleI GAGTC 1 cut(s) 749
PpsI GAGTC 1 cut(s) 749
Ppu21I YACGTR 1 cut(s) 399
PshAI GACNNNNGTC 1 cut(s) 759
PshBI ATTAAT 1 cut(s) 432
PspPI GGNCC 1 cut(s) 876
PsuI RGATCY 3 cut(s) 584, 658, 727
RsaI GTAC 1 cut(s) 824
RsaNI GTAC 1 cut(s) 823
SaqAI TTAA 8 cut(s) 51, 90, 275, 330, 432, 540, 723, 837
Sau3AI GATC 5 cut(s) 356, 584, 628, 658, 727
Sau96I GGNCC 1 cut(s) 876
SchI GAGTC 1 cut(s) 749
SetI ASST 7 cut(s) 57, 109, 243, 298, 401, 716, 803
SfaNI GCATC 1 cut(s) 488
SfuI TTCGAA 1 cut(s) 561
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
SnaBI TACGTA 1 cut(s) 399
SpeI ACTAGT 1 cut(s) 14
Sse9I AATT 9 cut(s) 64, 93, 217, 337, 363, 378, 507, 594, 738
SsiI CCGC 2 cut(s) 326, 446
SspI AATATT 1 cut(s) 127
SspMI CTAG 2 cut(s) 15, 695
StyI CCWWGG 3 cut(s) 33, 714, 767
TaaI ACNGT 1 cut(s) 393
TaiI ACGT 2 cut(s) 401, 803
TaqI TCGA 1 cut(s) 561
TasI AATT 9 cut(s) 64, 93, 217, 337, 363, 378, 507, 594, 738
TfiI GAWTC 4 cut(s) 134, 187, 791, 815
Tru1I TTAA 8 cut(s) 51, 90, 275, 330, 432, 540, 723, 837
Tru9I TTAA 8 cut(s) 51, 90, 275, 330, 432, 540, 723, 837
TscAI CASTG 2 cut(s) 121, 674
TspDTI ATGAA 5 cut(s) 203, 303, 306, 804, 842
TspGWI ACGGA 2 cut(s) 69, 810
TspRI CASTG 2 cut(s) 121, 674
Vha464I CTTAAG 1 cut(s) 539
VspI ATTAAT 1 cut(s) 432
XapI RAATTY 4 cut(s) 64, 93, 363, 738
XbaI TCTAGA 1 cut(s) 694
XcmI CCANNNNNNNNNTGG 1 cut(s) 595
XmiI GTMKAC 1 cut(s) 401
XspI CTAG 2 cut(s) 15, 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.