Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014529.1

Orthogroup ID

OG0000879

Physical Location & Seq

Genomic Coordinates Forward (+)

1332 .. 3364

Gene Structure 2033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014529.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atggggacggggatggggaatccccagtatcttattttggagattggggagggtaaggggatggagaatgaagtcgggcatggaacatgcaccgttttgaaatttggttcaccaaccgagtgcttccagaagggaaatgacttgtgggtggtcaacccaatagagtattggtttcagagtaacggttacttaaaagaaacagatcgcacgcacgcacgcacgctcgctcgctcagctgataggcgccatcatcaacgagttcggttacatgccatggtttcagtgtcagggcaaacttctgcggcagatagcagcccttcctctaccaacactaccactatttccacagaccgctttgccactttccaagcctctgtggatatgctccaatcgcactgcacttctaccaggttcaagacggtggagaacaagaatgagcccctcggtttgaaagagcttagaaaattatgggagaagcttgagcctgatcttgcttcggcgagaggggagtacaatgaatccaacacaatattattggatgattctccatataaggctttgcacaatccggtgaacaccgccatattccctgattcgtatcagttcaggaacagagaagattcttcattaggtgagagtgagacaccatcacggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

218

Amino Acids

24.42

Weight (kDa)

5.98

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29760 AT3G29760 AT3G29760 AT3G29760 AT3G29760
fragaria_vesca	FvH4_5g13671 FvH4_5g13671 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700
malus_domestica	MD06G1203100.v1.1 MD09G1068500.v1.1 MD14G1213700.v1.1 MD17G1061400.v1.1
prunus_persica	Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.5G206600_v2.0.a1
pyrus_communis	pycom06g18090 pycom12433g00100 pycom14g17710 pycom17g06130
rosa_chinensis	RchiOBHm_Chr1g0330571 RchiOBHm_Chr1g0330791 RchiOBHm_Chr1g0330841 RchiOBHm_Chr2g0165581 RchiOBHm_Chr7g0183261 RchiOBHm_Chr7g0183271
rosa_laevigata	RLG00000005061 RLG00000021541
rosa_multiflora	Rmu_sc0000815.1_g000003 Rmu_sc0005425.1_g000020 Rmu_sc0008744.1_g000011 Rmu_sc0014529.1_g000002 Rmu_sc0018426.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085710 Rroxscaffold_3G00270610
rosa_rugosa	Rorug02G0516200 Rorug05G0496600 Rorug05G0496600 Rorug05G0496600 Rorug06G0455700
rosa_samantha	Rh1AG107500 Rh1AG107600 Rh1AG111800 Rh1CG103400 Rh1CG106100 Rh1CG107100 Rh1DG113000 Rh2AG582300 Rh2BG594500 Rh2CG564400 Rh2DG604400 Rh7AG057700 Rh7BG057500 Rh7CG059100 Rh7DG057300
rosa_wichuraiana	Rw0G004370 Rw0G016070 Rw1G009080 Rw2G048580 Rw7G004720 Rw7G004730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	243
AciI	CCGC	3 cut(s)	302, 352, 579
AcsI	RAATTY	1 cut(s)	101
AcyI	GRCGYC	1 cut(s)	244
AfaI	GTAC	1 cut(s)	512
AgsI	TTSAA	3 cut(s)	100, 415, 451
AjnI	CCWGG	1 cut(s)	407
AluBI	AGCT	3 cut(s)	236, 457, 478
AluI	AGCT	3 cut(s)	236, 457, 478
Alw26I	GTCTC	1 cut(s)	635
ApeKI	GCWGC	1 cut(s)	312
ApoI	RAATTY	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	246
AsuHPI	GGTGA	3 cut(s)	102, 583, 644
BanI	GGYRCC	1 cut(s)	243
BanII	GRGCYC	1 cut(s)	441
BbvI	GCAGC	1 cut(s)	324
BccI	CCATC	4 cut(s)	7, 55, 255, 655
BciT130I	CCWGG	1 cut(s)	409
BcoDI	GTCTC	1 cut(s)	635
BfoI	RGCGCY	1 cut(s)	247
BisI	GCNGC	2 cut(s)	303, 313
BlpI	GCTNAGC	1 cut(s)	232
BlsI	GCNGC	2 cut(s)	304, 314
Bme1390I	CCNGG	1 cut(s)	409
BmiI	GGNNCC	1 cut(s)	245
BmrFI	CCNGG	1 cut(s)	409
BmrI	ACTGGG	1 cut(s)	19
BmuI	ACTGGG	1 cut(s)	19
Bpu1102I	GCTNAGC	1 cut(s)	232
BpuEI	CTTGAG	1 cut(s)	500
BsaBI	GATNNNNATC	1 cut(s)	597
BsaHI	GRCGYC	1 cut(s)	244
BsaJI	CCNNGG	2 cut(s)	273, 442
BsaWI	WCCGGW	1 cut(s)	568
Bse1I	ACTGG	1 cut(s)	25
Bse8I	GATNNNNATC	1 cut(s)	597
BseBI	CCWGG	1 cut(s)	409
BseDI	CCNNGG	2 cut(s)	273, 442
BseGI	GGATG	3 cut(s)	18, 66, 544
BseJI	GATNNNNATC	1 cut(s)	597
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	324
BsgI	GTGCAG	1 cut(s)	382
BshNI	GGYRCC	1 cut(s)	243
BsiSI	CCGG	1 cut(s)	569
BslFI	GGGAC	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	635
BsmFI	GGGAC	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	441
Bsp143I	GATC	2 cut(s)	202, 487
Bsp1720I	GCTNAGC	1 cut(s)	232
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	3 cut(s)	302, 352, 579
BspCNI	CTCAG	1 cut(s)	245
BspLI	GGNNCC	1 cut(s)	245
BspT107I	GGYRCC	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	25
BssECI	CCNNGG	2 cut(s)	273, 442
BssMI	GATC	2 cut(s)	202, 487
BssNI	GRCGYC	1 cut(s)	244
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	409
Bst4CI	ACNGT	4 cut(s)	94, 185, 421, 654
BstACI	GRCGYC	1 cut(s)	244
BstC8I	GCNNGC	6 cut(s)	209, 213, 217, 221, 225, 229
BstDEI	CTNAG	2 cut(s)	232, 458
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	3 cut(s)	18, 66, 544
BstH2I	RGCGCY	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	2 cut(s)	205, 490
BstMAI	GTCTC	1 cut(s)	635
BstMBI	GATC	2 cut(s)	202, 487
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 391
BstNI	CCWGG	1 cut(s)	409
BstNSI	RCATGY	2 cut(s)	90, 272
BstSCI	CCNGG	1 cut(s)	407
BstV1I	GCAGC	1 cut(s)	324
BtgI	CCRYGG	1 cut(s)	273
BtsCI	GGATG	3 cut(s)	18, 66, 544
BtsI	GCAGTG	1 cut(s)	394
BtsIMutI	CAGTG	2 cut(s)	288, 394
Cac8I	GCNNGC	6 cut(s)	209, 213, 217, 221, 225, 229
CfoI	GCGC	1 cut(s)	246
CsiI	ACCWGGT	1 cut(s)	407
Csp6I	GTAC	1 cut(s)	511
CviAII	CATG	4 cut(s)	80, 87, 269, 274
CviJI	RGCY	8 cut(s)	236, 315, 371, 439, 457, 478, 484, 557
CviKI_1	RGCY	8 cut(s)	236, 315, 371, 439, 457, 478, 484, 557
CviQI	GTAC	1 cut(s)	511
DdeI	CTNAG	2 cut(s)	232, 458
DinI	GGCGCC	1 cut(s)	245
DpnI	GATC	2 cut(s)	204, 489
DpnII	GATC	2 cut(s)	202, 487
Eco130I	CCWWGG	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	441
EcoRII	CCWGG	1 cut(s)	407
EcoT14I	CCWWGG	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	441
EgeI	GGCGCC	1 cut(s)	245
EheI	GGCGCC	1 cut(s)	245
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	4 cut(s)	83, 90, 272, 277
FaiI	YATR	9 cut(s)	81, 88, 270, 275, 383, 469, 550, 552, 584
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	4 cut(s)	79, 86, 268, 273
Fnu4HI	GCNGC	2 cut(s)	303, 313
FokI	GGATG	3 cut(s)	25, 73, 551
FriOI	GRGCYC	1 cut(s)	441
Fsp4HI	GCNGC	2 cut(s)	303, 313
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	2 cut(s)	303, 313
HaeII	RGCGCY	1 cut(s)	247
HapII	CCGG	1 cut(s)	569
HhaI	GCGC	1 cut(s)	246
Hin1I	GRCGYC	1 cut(s)	244
Hin1II	CATG	4 cut(s)	83, 90, 272, 277
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	476
HinfI	GANTC	5 cut(s)	19, 518, 542, 593, 620
HpaII	CCGG	1 cut(s)	569
HphI	GGTGA	3 cut(s)	102, 583, 644
Hpy166II	GTNNAC	3 cut(s)	110, 154, 574
Hpy188I	TCNGA	1 cut(s)	177
Hpy188III	TCNNGA	3 cut(s)	127, 415, 607
Hpy8I	GTNNAC	3 cut(s)	110, 154, 574
HpyAV	CCTTC	2 cut(s)	124, 327
HpyCH4III	ACNGT	4 cut(s)	94, 185, 421, 654
HpyCH4V	TGCA	3 cut(s)	90, 399, 562
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 391
HpyF3I	CTNAG	2 cut(s)	232, 458
Hsp92I	GRCGYC	1 cut(s)	244
Hsp92II	CATG	4 cut(s)	83, 90, 272, 277
HspAI	GCGC	1 cut(s)	244
KasI	GGCGCC	1 cut(s)	243
Kzo9I	GATC	2 cut(s)	202, 487
LmnI	GCTCC	1 cut(s)	390
LpnPI	CCDG	9 cut(s)	38, 140, 273, 394, 421, 498, 582, 592, 603
Lsp1109I	GCAGC	1 cut(s)	324
MabI	ACCWGGT	1 cut(s)	407
MaeIII	GTNAC	3 cut(s)	179, 185, 264
MalI	GATC	2 cut(s)	204, 489
MboI	GATC	2 cut(s)	202, 487
MboII	GAAGA	2 cut(s)	615, 629
MhlI	GDGCHC	1 cut(s)	441
MluCI	AATT	2 cut(s)	101, 464
Mly113I	GGCGCC	1 cut(s)	244
MmeI	TCCRAC	1 cut(s)	546
MnlI	CCTC	5 cut(s)	43, 331, 382, 452, 497
MseI	TTAA	1 cut(s)	191
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	1 cut(s)	569
MspR9I	CCNGG	1 cut(s)	409
MvaI	CCWGG	1 cut(s)	409
MwoI	GCNNNNNNNGC	2 cut(s)	233, 391
NarI	GGCGCC	1 cut(s)	244
NcoI	CCATGG	1 cut(s)	273
NdeII	GATC	2 cut(s)	202, 487
NlaIII	CATG	4 cut(s)	83, 90, 272, 277
NlaIV	GGNNCC	1 cut(s)	245
NspI	RCATGY	2 cut(s)	90, 272
PfeI	GAWTC	5 cut(s)	19, 518, 542, 593, 620
PkrI	GCNGC	2 cut(s)	304, 314
PluTI	GGCGCC	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	407
PspN4I	GGNNCC	1 cut(s)	245
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	1 cut(s)	512
RsaNI	GTAC	1 cut(s)	511
SaqAI	TTAA	1 cut(s)	191
SatI	GCNGC	2 cut(s)	303, 313
Sau3AI	GATC	2 cut(s)	202, 487
ScrFI	CCNGG	1 cut(s)	409
SduI	GDGCHC	1 cut(s)	441
SetI	ASST	5 cut(s)	238, 413, 459, 480, 634
SexAI	ACCWGGT	1 cut(s)	407
SfoI	GGCGCC	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	2 cut(s)	101, 464
SsiI	CCGC	3 cut(s)	302, 352, 579
SspDI	GGCGCC	1 cut(s)	243
SspI	AATATT	1 cut(s)	531
StyD4I	CCNGG	1 cut(s)	407
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	4 cut(s)	94, 185, 421, 654
TasI	AATT	2 cut(s)	101, 464
TatI	WGTACW	1 cut(s)	510
TauI	GCSGC	1 cut(s)	305
TfiI	GAWTC	5 cut(s)	19, 518, 542, 593, 620
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TscAI	CASTG	2 cut(s)	288, 401
TseI	GCWGC	1 cut(s)	312
TspDTI	ATGAA	3 cut(s)	84, 531, 615
TspRI	CASTG	2 cut(s)	288, 401
XapI	RAATTY	1 cut(s)	101
XceI	RCATGY	2 cut(s)	90, 272
XcmI	CCANNNNNNNNNTGG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.