Rmu_sc0018426.1_g000001

FCP1 homology domain-containing protein C1271.03c-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018426.1
OG0000879
Physical Location & Seq
Reverse (-)
1991 .. 4776
2786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018426.1_g000001.1.cds

Sequence Viewer

Length: 1224 bp
atgaccaagggtgaagtgcaagttaacctcttggcaaattcagcaccccgtccgtcctttgttaaaattccggagacaggtatggacactgccaaaaatatttcagaatcaagtcaagtgttgaaaaagagaacaagaaggagacataggaggaaaccgaatctaatgcaaaatactggcgtagttcataatttgcctcaggaacatgggcaggttgacactaactatataaaaagattgtcaactttaagtttatcagatgaaagaggcagcgatgtattagttatttcatctggagcggttaaaactaattgtgaagaggacatcagatcaggaatttcacatggctcaattgtgagaaaaccgtttaggtatacagggaaaaaacttcttattcttgacattaatggacttattgcggatatagtctctcctcctccaaagggatttgcatctgacataaggattgcaggacgagcaattttcaagaggccatactatcttgattttcttaagttctgctttgagcgtttcgaagtgggtgtgtggtcttcaagatccaagaaaattgtggaaagagtggttgattatctaatgggcgatctaaagcacaagttgctgttttgttgggatctatcccactgcactacaacagggttcagaactctagaaaataagcacaagaccttggtgtttaaggatctgaggagaatttgggaagaagatgactctggtcttccatgggagaagggcgtatatgatgaatctaatacgttattgttggatgattctccgtacaaagccctgcttaatcctgcacatactggggtctttccttatccatacacgtttcatggagggtgcgacaatgcattaggtcctggaggtcgtcttcggacgtatttggaaaagttggccgcagctgaaaatctacaagagtttgtagaccaacatccatttggtcaaagacctattactgaaagaagtgcatcttgggacttttacctcagggtactcgatacgatgtgtttgcagactcgtatgttagttgctgaagctgttggttttcttcatcttggcctcttgggctcaatctgtgtgggtaggtatacttattcttgggctctagctatatggttcgtgagaaccgacaagatttgcactttcagtttcactatagtttcggtgagcccttcatctacgaaaaactctggtatttgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NIF

Protein Analysis

407

Amino Acids

46.05

Weight (kDa)

9.21

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 202
AccBSI CCGCTC 1 cut(s) 299
AccI GTMKAC 3 cut(s) 374, 945, 1109
AccIII TCCGGA 1 cut(s) 70
AciI CCGC 3 cut(s) 299, 419, 918
AclWI GGATC 3 cut(s) 552, 639, 708
AcoI YGGCCR 1 cut(s) 915
AcsI RAATTY 4 cut(s) 37, 66, 336, 711
AcuI CTGAAG 1 cut(s) 1074
AfaI GTAC 2 cut(s) 797, 1014
AfiI CCNNNNNNNGG 2 cut(s) 77, 443
AflII CTTAAG 1 cut(s) 512
AflIII ACRYGT 1 cut(s) 846
AgsI TTSAA 3 cut(s) 124, 487, 555
AjnI CCWGG 1 cut(s) 880
AjuI GAANNNNNNNTTGG 2 cut(s) 976, 1008
AluBI AGCT 3 cut(s) 923, 1058, 1130
AluI AGCT 3 cut(s) 923, 1058, 1130
Alw26I GTCTC 3 cut(s) 68, 136, 433
AlwI GGATC 3 cut(s) 552, 639, 708
Aor13HI TCCGGA 1 cut(s) 70
AoxI GGCC 3 cut(s) 491, 915, 1078
ApeKI GCWGC 2 cut(s) 270, 920
ApoI RAATTY 4 cut(s) 37, 66, 336, 711
AseI ATTAAT 1 cut(s) 405
AspS9I GGNCC 1 cut(s) 878
AsuHPI GGTGA 2 cut(s) 23, 1198
AsuII TTCGAA 1 cut(s) 534
AvaII GGWCC 1 cut(s) 878
AxyI CCTNAGG 2 cut(s) 198, 1007
BanII GRGCYC 3 cut(s) 1091, 1126, 1193
BbsI GAAGAC 3 cut(s) 543, 728, 884
BbvI GCAGC 2 cut(s) 282, 932
BcgI CGANNNNNNTGC 4 cut(s) 148, 182, 1012, 1046
BciT130I CCWGG 1 cut(s) 882
BcoDI GTCTC 3 cut(s) 68, 136, 433
BfaI CTAG 2 cut(s) 668, 1127
BfmI CTRYAG 1 cut(s) 1176
BfrI CTTAAG 1 cut(s) 512
BfuAI ACCTGC 1 cut(s) 202
BglI GCCNNNNNGGC 1 cut(s) 1086
BisI GCNGC 3 cut(s) 271, 918, 921
BlsI GCNGC 3 cut(s) 272, 919, 922
Bme1390I CCNGG 1 cut(s) 882
Bme18I GGWCC 1 cut(s) 878
BmgT120I GGNCC 1 cut(s) 878
BmrFI CCNGG 1 cut(s) 882
BmrI ACTGGG 1 cut(s) 834
BmsI GCATC 2 cut(s) 461, 998
BmuI ACTGGG 1 cut(s) 834
BoxI GACNNNNGTC 1 cut(s) 732
BpiI GAAGAC 3 cut(s) 543, 728, 884
BpmI CTGGAG 2 cut(s) 315, 903
Bpu14I TTCGAA 1 cut(s) 534
BsaBI GATNNNNATC 1 cut(s) 451
BsaJI CCNNGG 3 cut(s) 6, 687, 740
BsaWI WCCGGW 1 cut(s) 70
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 443
Bse1I ACTGG 2 cut(s) 181, 829
Bse21I CCTNAGG 2 cut(s) 198, 1007
Bse8I GATNNNNATC 1 cut(s) 451
BseAI TCCGGA 1 cut(s) 70
BseBI CCWGG 1 cut(s) 882
BseDI CCNNGG 3 cut(s) 6, 687, 740
BseGI GGATG 2 cut(s) 790, 952
BseJI GATNNNNATC 1 cut(s) 451
BseLI CCNNNNNNNGG 2 cut(s) 77, 443
BseMII CTCAG 3 cut(s) 212, 695, 1021
BseNI ACTGG 2 cut(s) 181, 829
BseRI GAGGAG 3 cut(s) 423, 426, 721
BseXI GCAGC 2 cut(s) 282, 932
BsgI GTGCAG 2 cut(s) 628, 801
BshFI GGCC 3 cut(s) 493, 917, 1080
BsiSI CCGG 1 cut(s) 71
BslFI GGGAC 1 cut(s) 1010
BslI CCNNNNNNNGG 2 cut(s) 77, 443
BsmAI GTCTC 3 cut(s) 68, 136, 433
BsmFI GGGAC 1 cut(s) 1010
BsnI GGCC 3 cut(s) 493, 917, 1080
Bsp119I TTCGAA 1 cut(s) 534
Bsp1286I GDGCHC 3 cut(s) 1091, 1126, 1193
Bsp13I TCCGGA 1 cut(s) 70
Bsp143I GATC 5 cut(s) 329, 557, 601, 631, 700
Bsp19I CCATGG 1 cut(s) 740
BspACI CCGC 3 cut(s) 299, 419, 918
BspANI GGCC 3 cut(s) 493, 917, 1080
BspCNI CTCAG 3 cut(s) 211, 696, 1020
BspEI TCCGGA 1 cut(s) 70
BspMI ACCTGC 1 cut(s) 202
BspPI GGATC 3 cut(s) 552, 639, 708
BspT104I TTCGAA 1 cut(s) 534
BspTI CTTAAG 1 cut(s) 512
BsrBI CCGCTC 1 cut(s) 299
BsrI ACTGG 2 cut(s) 181, 829
BssECI CCNNGG 3 cut(s) 6, 687, 740
BssMI GATC 5 cut(s) 329, 557, 601, 631, 700
BssNAI GTATAC 2 cut(s) 375, 1110
BssT1I CCWWGG 3 cut(s) 6, 687, 740
Bst1107I GTATAC 2 cut(s) 375, 1110
Bst2UI CCWGG 1 cut(s) 882
Bst4CI ACNGT 1 cut(s) 366
Bst6I CTCTTC 1 cut(s) 312
BstAFI CTTAAG 1 cut(s) 512
BstAPI GCANNNNNTGC 1 cut(s) 616
BstBI TTCGAA 1 cut(s) 534
BstDEI CTNAG 3 cut(s) 198, 704, 1007
BstDSI CCRYGG 1 cut(s) 740
BstF5I GGATG 2 cut(s) 790, 952
BstKTI GATC 5 cut(s) 332, 560, 604, 634, 703
BstMAI GTCTC 3 cut(s) 68, 136, 433
BstMBI GATC 5 cut(s) 329, 557, 601, 631, 700
BstMWI GCNNNNNNNGC 4 cut(s) 41, 476, 616, 1086
BstNI CCWGG 1 cut(s) 882
BstPAI GACNNNNGTC 1 cut(s) 732
BstSCI CCNGG 1 cut(s) 880
BstSFI CTRYAG 1 cut(s) 1176
BstV1I GCAGC 2 cut(s) 282, 932
BstV2I GAAGAC 3 cut(s) 543, 728, 884
BstX2I RGATCY 3 cut(s) 557, 631, 700
BstYI RGATCY 3 cut(s) 557, 631, 700
BstZ17I GTATAC 2 cut(s) 375, 1110
Bsu36I CCTNAGG 2 cut(s) 198, 1007
BsuRI GGCC 3 cut(s) 493, 917, 1080
BtgI CCRYGG 1 cut(s) 740
BtgZI GCGATG 1 cut(s) 288
BtsCI GGATG 2 cut(s) 790, 952
BtsI GCAGTG 2 cut(s) 87, 640
BtsIMutI CAGTG 2 cut(s) 87, 640
BveI ACCTGC 1 cut(s) 202
Cfr13I GGNCC 1 cut(s) 878
Csp6I GTAC 2 cut(s) 796, 1013
CspCI CAANNNNNGTGG 2 cut(s) 1080, 1115
CviAII CATG 4 cut(s) 206, 344, 741, 854
CviQI GTAC 2 cut(s) 796, 1013
DdeI CTNAG 3 cut(s) 198, 704, 1007
DpnI GATC 5 cut(s) 331, 559, 603, 633, 702
DpnII GATC 5 cut(s) 329, 557, 601, 631, 700
EaeI YGGCCR 1 cut(s) 915
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Eco130I CCWWGG 3 cut(s) 6, 687, 740
Eco24I GRGCYC 3 cut(s) 1091, 1126, 1193
Eco47I GGWCC 1 cut(s) 878
Eco57I CTGAAG 1 cut(s) 1074
Eco81I CCTNAGG 2 cut(s) 198, 1007
EcoO109I RGGNCCY 1 cut(s) 878
EcoRII CCWGG 1 cut(s) 880
EcoT14I CCWWGG 3 cut(s) 6, 687, 740
EcoT22I ATGCAT 1 cut(s) 874
EcoT38I GRGCYC 3 cut(s) 1091, 1126, 1193
ErhI CCWWGG 3 cut(s) 6, 687, 740
FaeI CATG 4 cut(s) 209, 347, 744, 857
FalI AAGNNNNNCTT 6 cut(s) 506, 538, 792, 824, 976, 1008
FaqI GGGAC 1 cut(s) 1010
FatI CATG 4 cut(s) 205, 343, 740, 853
FblI GTMKAC 3 cut(s) 374, 945, 1109
Fnu4HI GCNGC 3 cut(s) 271, 918, 921
FokI GGATG 2 cut(s) 797, 939
FriOI GRGCYC 3 cut(s) 1091, 1126, 1193
Fsp4HI GCNGC 3 cut(s) 271, 918, 921
FspBI CTAG 2 cut(s) 668, 1127
GluI GCNGC 3 cut(s) 271, 918, 921
GsuI CTGGAG 2 cut(s) 315, 903
HaeIII GGCC 3 cut(s) 493, 917, 1080
HapII CCGG 1 cut(s) 71
Hin1II CATG 4 cut(s) 209, 347, 744, 857
HincII GTYRAC 3 cut(s) 25, 217, 243
HindII GTYRAC 3 cut(s) 25, 217, 243
HinfI GANTC 6 cut(s) 107, 160, 728, 764, 788, 1036
HpaI GTTAAC 1 cut(s) 25
HpaII CCGG 1 cut(s) 71
HphI GGTGA 2 cut(s) 23, 1198
Hpy166II GTNNAC 6 cut(s) 25, 217, 243, 375, 946, 1110
Hpy188I TCNGA 7 cut(s) 106, 259, 329, 457, 662, 705, 897
Hpy8I GTNNAC 6 cut(s) 25, 217, 243, 375, 946, 1110
HpyAV CCTTC 3 cut(s) 132, 742, 1203
HpyCH4III ACNGT 1 cut(s) 366
HpyCH4IV ACGT 3 cut(s) 773, 848, 899
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 476, 616, 1086
HpyF3I CTNAG 3 cut(s) 198, 704, 1007
HpySE526I ACGT 3 cut(s) 773, 848, 899
Hsp92II CATG 4 cut(s) 209, 347, 744, 857
Kpn2I TCCGGA 1 cut(s) 70
KspAI GTTAAC 1 cut(s) 25
Kzo9I GATC 5 cut(s) 329, 557, 601, 631, 700
LmnI GCTCC 1 cut(s) 296
Lsp1109I GCAGC 2 cut(s) 282, 932
LweI GCATC 2 cut(s) 461, 998
MaeI CTAG 2 cut(s) 668, 1127
MaeII ACGT 3 cut(s) 773, 848, 899
MalI GATC 5 cut(s) 331, 559, 603, 633, 702
MbiI CCGCTC 1 cut(s) 299
MboI GATC 5 cut(s) 329, 557, 601, 631, 700
MboII GAAGA 7 cut(s) 329, 543, 728, 731, 734, 884, 1061
MfeI CAATTG 1 cut(s) 351
MflI RGATCY 3 cut(s) 557, 631, 700
MhlI GDGCHC 3 cut(s) 1091, 1126, 1193
MluCI AATT 9 cut(s) 37, 66, 190, 310, 336, 351, 480, 567, 711
MlyI GAGTC 2 cut(s) 722, 1030
MmeI TCCRAC 1 cut(s) 762
Mph1103I ATGCAT 1 cut(s) 874
MroI TCCGGA 1 cut(s) 70
MseI TTAA 8 cut(s) 24, 63, 248, 303, 405, 513, 696, 810
MspA1I CMGCKG 1 cut(s) 923
MspCI CTTAAG 1 cut(s) 512
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 882
MunI CAATTG 1 cut(s) 351
MvaI CCWGG 1 cut(s) 882
MwoI GCNNNNNNNGC 4 cut(s) 41, 476, 616, 1086
NcoI CCATGG 1 cut(s) 740
NdeII GATC 5 cut(s) 329, 557, 601, 631, 700
NlaIII CATG 4 cut(s) 209, 347, 744, 857
NsiI ATGCAT 1 cut(s) 874
NspV TTCGAA 1 cut(s) 534
PcsI WCGNNNNNNNCGW 1 cut(s) 1146
PfeI GAWTC 4 cut(s) 107, 160, 764, 788
PfoI TCCNGGA 1 cut(s) 880
PkrI GCNGC 3 cut(s) 272, 919, 922
PleI GAGTC 2 cut(s) 722, 1030
PpsI GAGTC 2 cut(s) 722, 1030
PpuMI RGGWCCY 1 cut(s) 878
PshAI GACNNNNGTC 1 cut(s) 732
PshBI ATTAAT 1 cut(s) 405
Psp5II RGGWCCY 1 cut(s) 878
Psp6I CCWGG 1 cut(s) 880
PspGI CCWGG 1 cut(s) 880
PspPI GGNCC 1 cut(s) 878
PspPPI RGGWCCY 1 cut(s) 878
PsuI RGATCY 3 cut(s) 557, 631, 700
PvuII CAGCTG 1 cut(s) 923
RsaI GTAC 2 cut(s) 797, 1014
RsaNI GTAC 2 cut(s) 796, 1013
SaqAI TTAA 8 cut(s) 24, 63, 248, 303, 405, 513, 696, 810
SatI GCNGC 3 cut(s) 271, 918, 921
Sau3AI GATC 5 cut(s) 329, 557, 601, 631, 700
Sau96I GGNCC 1 cut(s) 878
SchI GAGTC 2 cut(s) 722, 1030
ScrFI CCNGG 1 cut(s) 882
SduI GDGCHC 3 cut(s) 1091, 1126, 1193
SfaNI GCATC 2 cut(s) 461, 998
SfcI CTRYAG 1 cut(s) 1176
SfuI TTCGAA 1 cut(s) 534
SinI GGWCC 1 cut(s) 878
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
Sse9I AATT 9 cut(s) 37, 66, 190, 310, 336, 351, 480, 567, 711
SsiI CCGC 3 cut(s) 299, 419, 918
SspI AATATT 1 cut(s) 100
SspMI CTAG 2 cut(s) 668, 1127
StyD4I CCNGG 1 cut(s) 880
StyI CCWWGG 3 cut(s) 6, 687, 740
TaaI ACNGT 1 cut(s) 366
TaiI ACGT 3 cut(s) 776, 851, 902
TaqI TCGA 2 cut(s) 534, 1017
TasI AATT 9 cut(s) 37, 66, 190, 310, 336, 351, 480, 567, 711
TauI GCSGC 1 cut(s) 920
TfiI GAWTC 4 cut(s) 107, 160, 764, 788
Tru1I TTAA 8 cut(s) 24, 63, 248, 303, 405, 513, 696, 810
Tru9I TTAA 8 cut(s) 24, 63, 248, 303, 405, 513, 696, 810
TscAI CASTG 2 cut(s) 94, 647
TseI GCWGC 2 cut(s) 270, 920
TspDTI ATGAA 7 cut(s) 176, 276, 279, 777, 842, 1061, 1185
TspGWI ACGGA 2 cut(s) 42, 783
TspRI CASTG 2 cut(s) 94, 647
Vha464I CTTAAG 1 cut(s) 512
VpaK11BI GGWCC 1 cut(s) 878
VspI ATTAAT 1 cut(s) 405
XapI RAATTY 4 cut(s) 37, 66, 336, 711
XbaI TCTAGA 1 cut(s) 667
XcmI CCANNNNNNNNNTGG 2 cut(s) 568, 956
XmiI GTMKAC 3 cut(s) 374, 945, 1109
XspI CTAG 2 cut(s) 668, 1127
Zsp2I ATGCAT 1 cut(s) 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.