Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000879

Physical Location & Seq

Genomic Coordinates Reverse (-)

20524167 .. 20527648

Gene Structure 3482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55991

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGTTCTCCATATAAGGCTTTGCTCAATCCGGTTAGCTTGCCATCTGTTATGCTTTTTGTCCAAGGAGCTATTGGGAGATTTTGAGGCATATGTAGAGATTTTCATTCCAATGCTGCGTAACTGTAAAGTTGCTCAGGTGCTCCCTCATATGCGGATTGTGCAAAGAATGACCGTGATGCAATACTTTGGGCAAGGTGCTATGGCAGATTTGTATGAAGATCTAATAAGATGTTGTGTTGCAGATGCAATGAGCGAGGTCCATTCAACTGCAAGAATGTGCTATAGAATGTTTTCTAAAACCTGGCCAGAGTGTTCCCGACGACTATTTTCACTATTTGATTCCGTTATTCAAAGGTTAATCAATGAAGAGGATGGGGGTATCCACAGGCAACATGCTTCTCCATCTGTTCATGATAGGGGTACACCAGTCTCATTTACTCCCCAGCCATCTGCTTCTGCTAATCTACCTGGATTTGGAACTTCGGCTACTGTTGCAATGGGTAGAAGTTCTAGTTTATCCTCTAGGACTTCTTTCTCTTCAGGACTTCATCTGTCACAAGCGAAGTTACATGGAAAAGGTACCGAGCGTAGTCTGGAAAGTGTGTTGTATGCAAGCAAACAAAAGGTCAGTGCAATTGAAAGCATGCTTAGAGGTTTGGAGCTGTTTGACAGAAATAATTCTTCAACTCTCTGGTCATCTAGCCTGGATCTAGGAGTTGACCCTCCATCATCTCGTGATCCACCATTCCCTGCTGCTGTCCCAGCTTCTAATCATCTTTCAAACTCTCTAATAACAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

267

Amino Acids

29.51

Weight (kDa)

8.14

Isoelectric Point (pI)

51.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLASP_N	PF12348	61 - 121	1.5e-11	CLASP N terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29760 AT3G29760 AT3G29760 AT3G29760 AT3G29760
fragaria_vesca	FvH4_5g13671 FvH4_5g13671 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700
malus_domestica	MD06G1203100.v1.1 MD09G1068500.v1.1 MD14G1213700.v1.1 MD17G1061400.v1.1
prunus_persica	Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.5G206600_v2.0.a1
pyrus_communis	pycom06g18090 pycom12433g00100 pycom14g17710 pycom17g06130
rosa_chinensis	RchiOBHm_Chr1g0330571 RchiOBHm_Chr1g0330791 RchiOBHm_Chr1g0330841 RchiOBHm_Chr2g0165581 RchiOBHm_Chr7g0183261 RchiOBHm_Chr7g0183271
rosa_laevigata	RLG00000005061 RLG00000021541
rosa_multiflora	Rmu_sc0000815.1_g000003 Rmu_sc0005425.1_g000020 Rmu_sc0008744.1_g000011 Rmu_sc0014529.1_g000002 Rmu_sc0018426.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085710 Rroxscaffold_3G00270610
rosa_rugosa	Rorug02G0516200 Rorug05G0496600 Rorug05G0496600 Rorug05G0496600 Rorug06G0455700
rosa_samantha	Rh1AG107500 Rh1AG107600 Rh1AG111800 Rh1CG103400 Rh1CG106100 Rh1CG107100 Rh1DG113000 Rh2AG582300 Rh2BG594500 Rh2CG564400 Rh2DG604400 Rh7AG057700 Rh7BG057500 Rh7CG059100 Rh7DG057300
rosa_wichuraiana	Rw0G004370 Rw0G016070 Rw1G009080 Rw2G048580 Rw7G004720 Rw7G004730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	581
AccB1I	GGYRCC	1 cut(s)	581
AciI	CCGC	1 cut(s)	154
AclWI	GGATC	2 cut(s)	717, 734
AcoI	YGGCCR	1 cut(s)	305
AcuI	CTGAAG	1 cut(s)	525
AfaI	GTAC	2 cut(s)	424, 583
AfiI	CCNNNNNNNGG	1 cut(s)	476
AgsI	TTSAA	5 cut(s)	267, 353, 641, 687, 783
AjnI	CCWGG	3 cut(s)	302, 469, 705
AluBI	AGCT	4 cut(s)	38, 70, 664, 767
AluI	AGCT	4 cut(s)	38, 70, 664, 767
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	436
AlwI	GGATC	2 cut(s)	717, 734
AoxI	GGCC	1 cut(s)	305
ApeKI	GCWGC	2 cut(s)	115, 755
ArsI	GACNNNNNNTTYG	2 cut(s)	612, 644
Asp700I	GAANNNNTTC	2 cut(s)	292, 679
Asp718I	GGTACC	1 cut(s)	581
AspS9I	GGNCC	1 cut(s)	259
AvaII	GGWCC	1 cut(s)	259
BaeI	ACNNNNGTAYC	2 cut(s)	414, 447
BalI	TGGCCA	1 cut(s)	307
BanI	GGYRCC	1 cut(s)	581
BauI	CACGAG	1 cut(s)	735
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	2 cut(s)	102, 742
BccI	CCATC	5 cut(s)	51, 368, 412, 457, 736
BciT130I	CCWGG	3 cut(s)	304, 471, 707
BciVI	GTATCC	1 cut(s)	392
BcoDI	GTCTC	1 cut(s)	436
BfaI	CTAG	4 cut(s)	513, 525, 702, 713
BfmI	CTRYAG	1 cut(s)	283
BfuI	GTATCC	1 cut(s)	392
BglII	AGATCT	1 cut(s)	220
BisI	GCNGC	2 cut(s)	116, 756
BlsI	GCNGC	2 cut(s)	117, 757
Bme1390I	CCNGG	3 cut(s)	304, 471, 707
Bme18I	GGWCC	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	259
BmiI	GGNNCC	1 cut(s)	583
BmrFI	CCNGG	3 cut(s)	304, 471, 707
BmsI	GCATC	2 cut(s)	168, 235
Bpu10I	CCTNAGC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	63
BsaWI	WCCGGW	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	1 cut(s)	476
Bse1I	ACTGG	1 cut(s)	428
Bse3DI	GCAATG	2 cut(s)	255, 504
BseBI	CCWGG	3 cut(s)	304, 471, 707
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	1 cut(s)	476
BseMI	GCAATG	2 cut(s)	255, 504
BseMII	CTCAG	1 cut(s)	149
BseNI	ACTGG	1 cut(s)	428
BseXI	GCAGC	2 cut(s)	102, 742
BseYI	CCCAGC	2 cut(s)	444, 763
BshFI	GGCC	1 cut(s)	307
BshNI	GGYRCC	1 cut(s)	581
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	31
BslFI	GGGAC	1 cut(s)	746
BslI	CCNNNNNNNGG	1 cut(s)	476
BsmAI	GTCTC	1 cut(s)	436
BsmFI	GGGAC	1 cut(s)	746
BsnI	GGCC	1 cut(s)	307
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	3 cut(s)	220, 709, 739
BspACI	CCGC	1 cut(s)	154
BspANI	GGCC	1 cut(s)	307
BspCNI	CTCAG	1 cut(s)	148
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	1 cut(s)	583
BspPI	GGATC	2 cut(s)	717, 734
BspT107I	GGYRCC	1 cut(s)	581
BsrDI	GCAATG	2 cut(s)	255, 504
BsrI	ACTGG	1 cut(s)	428
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	3 cut(s)	220, 709, 739
BssSI	CACGAG	1 cut(s)	735
BssT1I	CCWWGG	1 cut(s)	63
Bst2BI	CACGAG	1 cut(s)	735
Bst2UI	CCWGG	3 cut(s)	304, 471, 707
Bst4CI	ACNGT	3 cut(s)	125, 175, 493
Bst6I	CTCTTC	2 cut(s)	363, 544
BstC8I	GCNNGC	3 cut(s)	40, 616, 647
BstDEI	CTNAG	2 cut(s)	135, 650
BstF5I	GGATG	1 cut(s)	379
BstKTI	GATC	3 cut(s)	223, 712, 742
BstMAI	GTCTC	1 cut(s)	436
BstMBI	GATC	3 cut(s)	220, 709, 739
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 494, 764
BstNI	CCWGG	3 cut(s)	304, 471, 707
BstNSI	RCATGY	2 cut(s)	398, 649
BstSCI	CCNGG	3 cut(s)	302, 469, 705
BstSFI	CTRYAG	1 cut(s)	283
BstV1I	GCAGC	2 cut(s)	102, 742
BstX2I	RGATCY	2 cut(s)	220, 709
BstYI	RGATCY	2 cut(s)	220, 709
BsuI	GTATCC	1 cut(s)	392
BsuRI	GGCC	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	379
BtsIMutI	CAGTG	1 cut(s)	637
Cac8I	GCNNGC	3 cut(s)	40, 616, 647
CciI	TCATGA	1 cut(s)	412
Cfr13I	GGNCC	1 cut(s)	259
Csp6I	GTAC	2 cut(s)	423, 582
CviAII	CATG	4 cut(s)	395, 413, 572, 646
CviJI	RGCY	9 cut(s)	19, 38, 70, 307, 448, 488, 664, 705, 767
CviKI_1	RGCY	9 cut(s)	19, 38, 70, 307, 448, 488, 664, 705, 767
CviQI	GTAC	2 cut(s)	423, 582
DdeI	CTNAG	2 cut(s)	135, 650
DpnI	GATC	3 cut(s)	222, 711, 741
DpnII	GATC	3 cut(s)	220, 709, 739
EaeI	YGGCCR	1 cut(s)	305
Eam1104I	CTCTTC	2 cut(s)	363, 544
EarI	CTCTTC	2 cut(s)	363, 544
Eco130I	CCWWGG	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	525
EcoRII	CCWGG	3 cut(s)	302, 469, 705
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	4 cut(s)	398, 416, 575, 649
FaqI	GGGAC	1 cut(s)	746
FatI	CATG	4 cut(s)	394, 412, 571, 645
FauNDI	CATATG	2 cut(s)	91, 150
Fnu4HI	GCNGC	2 cut(s)	116, 756
FokI	GGATG	1 cut(s)	386
Fsp4HI	GCNGC	2 cut(s)	116, 756
FspBI	CTAG	4 cut(s)	513, 525, 702, 713
GluI	GCNGC	2 cut(s)	116, 756
GsaI	CCCAGC	2 cut(s)	448, 767
HaeIII	GGCC	1 cut(s)	307
HapII	CCGG	1 cut(s)	31
Hin1II	CATG	4 cut(s)	398, 416, 575, 649
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HinfI	GANTC	1 cut(s)	341
HpaII	CCGG	1 cut(s)	31
Hpy166II	GTNNAC	2 cut(s)	425, 721
Hpy188III	TCNNGA	5 cut(s)	318, 413, 543, 596, 737
Hpy8I	GTNNAC	2 cut(s)	425, 721
Hpy99I	CGWCG	1 cut(s)	324
HpyCH4III	ACNGT	3 cut(s)	125, 175, 493
HpyCH4V	TGCA	8 cut(s)	163, 181, 242, 248, 272, 497, 614, 635
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 494, 764
HpyF3I	CTNAG	2 cut(s)	135, 650
Hsp92II	CATG	4 cut(s)	398, 416, 575, 649
KpnI	GGTACC	1 cut(s)	585
Kzo9I	GATC	3 cut(s)	220, 709, 739
LmnI	GCTCC	3 cut(s)	67, 147, 661
Lsp1109I	GCAGC	2 cut(s)	102, 742
LweI	GCATC	2 cut(s)	168, 235
MaeI	CTAG	4 cut(s)	513, 525, 702, 713
MaeIII	GTNAC	3 cut(s)	119, 555, 567
MalI	GATC	3 cut(s)	222, 711, 741
MboI	GATC	3 cut(s)	220, 709, 739
MboII	GAAGA	4 cut(s)	230, 380, 531, 675
MfeI	CAATTG	1 cut(s)	636
MflI	RGATCY	2 cut(s)	220, 709
MhlI	GDGCHC	1 cut(s)	144
MlsI	TGGCCA	1 cut(s)	307
MluCI	AATT	2 cut(s)	636, 679
MluNI	TGGCCA	1 cut(s)	307
MnlI	CCTC	7 cut(s)	79, 156, 250, 364, 532, 647, 735
Mox20I	TGGCCA	1 cut(s)	307
MroXI	GAANNNNTTC	2 cut(s)	292, 679
MscI	TGGCCA	1 cut(s)	307
MseI	TTAA	1 cut(s)	359
MslI	CAYNNNNRTG	1 cut(s)	110
Msp20I	TGGCCA	1 cut(s)	307
MspI	CCGG	1 cut(s)	31
MspR9I	CCNGG	3 cut(s)	304, 471, 707
MunI	CAATTG	1 cut(s)	636
MvaI	CCWGG	3 cut(s)	304, 471, 707
MwoI	GCNNNNNNNGC	3 cut(s)	160, 494, 764
NdeI	CATATG	2 cut(s)	91, 150
NdeII	GATC	3 cut(s)	220, 709, 739
NlaIII	CATG	4 cut(s)	398, 416, 575, 649
NlaIV	GGNNCC	1 cut(s)	583
NmuCI	GTSAC	1 cut(s)	555
NspI	RCATGY	2 cut(s)	398, 649
PaeI	GCATGC	1 cut(s)	649
PagI	TCATGA	1 cut(s)	412
PdmI	GAANNNNTTC	2 cut(s)	292, 679
PfeI	GAWTC	1 cut(s)	341
PkrI	GCNGC	2 cut(s)	117, 757
Psp6I	CCWGG	3 cut(s)	302, 469, 705
PspFI	CCCAGC	2 cut(s)	444, 763
PspGI	CCWGG	3 cut(s)	302, 469, 705
PspN4I	GGNNCC	1 cut(s)	583
PspPI	GGNCC	1 cut(s)	259
PsrI	GAACNNNNNNTAC	2 cut(s)	472, 504
PsuI	RGATCY	2 cut(s)	220, 709
RsaI	GTAC	2 cut(s)	424, 583
RsaNI	GTAC	2 cut(s)	423, 582
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	359
SatI	GCNGC	2 cut(s)	116, 756
Sau3AI	GATC	3 cut(s)	220, 709, 739
Sau96I	GGNCC	1 cut(s)	259
ScrFI	CCNGG	3 cut(s)	304, 471, 707
SduI	GDGCHC	1 cut(s)	144
SfaNI	GCATC	2 cut(s)	168, 235
SfcI	CTRYAG	1 cut(s)	283
SinI	GGWCC	1 cut(s)	259
SmiMI	CAYNNNNRTG	1 cut(s)	110
SphI	GCATGC	1 cut(s)	649
Sse9I	AATT	2 cut(s)	636, 679
SsiI	CCGC	1 cut(s)	154
SspMI	CTAG	4 cut(s)	513, 525, 702, 713
StyD4I	CCNGG	3 cut(s)	302, 469, 705
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	3 cut(s)	125, 175, 493
TasI	AATT	2 cut(s)	636, 679
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	1 cut(s)	359
Tru9I	TTAA	1 cut(s)	359
TscAI	CASTG	1 cut(s)	637
TseFI	GTSAC	1 cut(s)	555
TseI	GCWGC	2 cut(s)	115, 755
Tsp45I	GTSAC	1 cut(s)	555
TspDTI	ATGAA	5 cut(s)	94, 231, 381, 401, 539
TspGWI	ACGGA	1 cut(s)	334
TspRI	CASTG	1 cut(s)	637
VpaK11BI	GGWCC	1 cut(s)	259
XceI	RCATGY	2 cut(s)	398, 649
XcmI	CCANNNNNNNNNTGG	1 cut(s)	70
XmnI	GAANNNNTTC	2 cut(s)	292, 679
XspI	CTAG	4 cut(s)	513, 525, 702, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.