Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000815.1

Orthogroup ID

OG0000879

Physical Location & Seq

Genomic Coordinates Forward (+)

13479 .. 13862

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000815.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgacgccagaagcagatccatctcttcagcctcttcttgcaatattctctgaacaagaggtagaggtgacacatccacttgatactagtacagagtggaaaaataccaagtttgatgaagttccttcctcgtcacatttggctccaaaagctgatactgaagtagttgctatcagtagagagggcagtcttttgcagatggcacaatcttcacctgaaaaatctcttcttaagggttctcagaaaaagcttctcattcttgatattaatgggctgcttgctgatattgttcagatggatgattctaactgcagtagttttaaaccagacaaagttatatcatggaaagtgtatttaaatatctatagagatgtattctgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

127

Amino Acids

14.14

Weight (kDa)

4.7

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29760 AT3G29760 AT3G29760 AT3G29760 AT3G29760
fragaria_vesca	FvH4_5g13671 FvH4_5g13671 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700
malus_domestica	MD06G1203100.v1.1 MD09G1068500.v1.1 MD14G1213700.v1.1 MD17G1061400.v1.1
prunus_persica	Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.5G206600_v2.0.a1
pyrus_communis	pycom06g18090 pycom12433g00100 pycom14g17710 pycom17g06130
rosa_chinensis	RchiOBHm_Chr1g0330571 RchiOBHm_Chr1g0330791 RchiOBHm_Chr1g0330841 RchiOBHm_Chr2g0165581 RchiOBHm_Chr7g0183261 RchiOBHm_Chr7g0183271
rosa_laevigata	RLG00000005061 RLG00000021541
rosa_multiflora	Rmu_sc0000815.1_g000003 Rmu_sc0005425.1_g000020 Rmu_sc0008744.1_g000011 Rmu_sc0014529.1_g000002 Rmu_sc0018426.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085710 Rroxscaffold_3G00270610
rosa_rugosa	Rorug02G0516200 Rorug05G0496600 Rorug05G0496600 Rorug05G0496600 Rorug06G0455700
rosa_samantha	Rh1AG107500 Rh1AG107600 Rh1AG111800 Rh1CG103400 Rh1CG106100 Rh1CG107100 Rh1DG113000 Rh2AG582300 Rh2BG594500 Rh2CG564400 Rh2DG604400 Rh7AG057700 Rh7BG057500 Rh7CG059100 Rh7DG057300
rosa_wichuraiana	Rw0G004370 Rw0G016070 Rw1G009080 Rw2G048580 Rw7G004720 Rw7G004730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	11
AcuI	CTGAAG	2 cut(s)	11, 180
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	91
AflII	CTTAAG	1 cut(s)	230
AhlI	ACTAGT	1 cut(s)	86
AluBI	AGCT	2 cut(s)	152, 250
AluI	AGCT	2 cut(s)	152, 250
AlwI	GGATC	1 cut(s)	11
ApeKI	GCWGC	1 cut(s)	274
AseI	ATTAAT	1 cut(s)	267
AsuHPI	GGTGA	2 cut(s)	79, 204
BaeI	ACNNNNGTAYC	2 cut(s)	147, 180
BbvI	GCAGC	1 cut(s)	261
BccI	CCATC	3 cut(s)	28, 193, 289
BcuI	ACTAGT	1 cut(s)	86
BfaI	CTAG	1 cut(s)	87
BfmI	CTRYAG	2 cut(s)	310, 364
BfrI	CTTAAG	1 cut(s)	230
BisI	GCNGC	1 cut(s)	275
BlsI	GCNGC	1 cut(s)	276
BmiI	GGNNCC	1 cut(s)	144
BsaHI	GRCGYC	1 cut(s)	5
BseGI	GGATG	2 cut(s)	73, 304
BseMII	CTCAG	1 cut(s)	254
BseXI	GCAGC	1 cut(s)	261
Bsp143I	GATC	1 cut(s)	16
BspCNI	CTCAG	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	144
BspMAI	CTGCAG	1 cut(s)	314
BspPI	GGATC	1 cut(s)	11
BspTI	CTTAAG	1 cut(s)	230
BssMI	GATC	1 cut(s)	16
BssNI	GRCGYC	1 cut(s)	5
Bst6I	CTCTTC	3 cut(s)	30, 39, 231
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	1 cut(s)	240
BstF5I	GGATG	2 cut(s)	73, 304
BstKTI	GATC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstSFI	CTRYAG	2 cut(s)	310, 364
BstV1I	GCAGC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	73, 304
Cac8I	GCNNGC	1 cut(s)	279
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	1 cut(s)	342
CviJI	RGCY	5 cut(s)	31, 143, 152, 250, 274
CviKI_1	RGCY	5 cut(s)	31, 143, 152, 250, 274
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
DraI	TTTAAA	2 cut(s)	322, 357
Eam1104I	CTCTTC	3 cut(s)	30, 39, 231
EarI	CTCTTC	3 cut(s)	30, 39, 231
Eco57I	CTGAAG	2 cut(s)	11, 180
FaeI	CATG	1 cut(s)	345
FaiI	YATR	3 cut(s)	338, 343, 366
FatI	CATG	1 cut(s)	341
Fnu4HI	GCNGC	1 cut(s)	275
FokI	GGATG	2 cut(s)	60, 311
Fsp4HI	GCNGC	1 cut(s)	275
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	1 cut(s)	275
HgaI	GACGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	345
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	1 cut(s)	302
HphI	GGTGA	2 cut(s)	79, 204
Hpy188I	TCNGA	3 cut(s)	52, 243, 294
Hpy188III	TCNNGA	1 cut(s)	260
HpyAV	CCTTC	1 cut(s)	135
HpyCH4V	TGCA	3 cut(s)	41, 196, 312
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	240
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	345
Kzo9I	GATC	1 cut(s)	16
LmnI	GCTCC	1 cut(s)	148
LpnPI	CCDG	3 cut(s)	21, 228, 339
Lsp1109I	GCAGC	1 cut(s)	261
MaeI	CTAG	1 cut(s)	87
MaeIII	GTNAC	2 cut(s)	67, 132
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	4 cut(s)	17, 26, 201, 218
MflI	RGATCY	1 cut(s)	16
MnlI	CCTC	5 cut(s)	42, 52, 58, 139, 175
MseI	TTAA	5 cut(s)	231, 267, 321, 356, 382
MspCI	CTTAAG	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	149
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	1 cut(s)	345
NlaIV	GGNNCC	1 cut(s)	144
NmuCI	GTSAC	2 cut(s)	67, 132
PfeI	GAWTC	1 cut(s)	302
PkrI	GCNGC	1 cut(s)	276
PshBI	ATTAAT	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	144
PstI	CTGCAG	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	16
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
SaqAI	TTAA	5 cut(s)	231, 267, 321, 356, 382
SatI	GCNGC	1 cut(s)	275
Sau3AI	GATC	1 cut(s)	16
SetI	ASST	5 cut(s)	63, 69, 154, 217, 252
SfcI	CTRYAG	2 cut(s)	310, 364
SmiI	ATTTAAAT	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
SpeI	ACTAGT	1 cut(s)	86
SspI	AATATT	1 cut(s)	45
SspMI	CTAG	1 cut(s)	87
SwaI	ATTTAAAT	1 cut(s)	357
TatI	WGTACW	1 cut(s)	89
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	5 cut(s)	231, 267, 321, 356, 382
Tru9I	TTAA	5 cut(s)	231, 267, 321, 356, 382
TseFI	GTSAC	2 cut(s)	67, 132
TseI	GCWGC	1 cut(s)	274
Tsp45I	GTSAC	2 cut(s)	67, 132
TspDTI	ATGAA	1 cut(s)	132
Vha464I	CTTAAG	1 cut(s)	230
VspI	ATTAAT	1 cut(s)	267
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.