Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005425.1

Orthogroup ID

OG0000879

Physical Location & Seq

Genomic Coordinates Forward (+)

98239 .. 100543

Gene Structure 2305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005425.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

atgaccaagggtgaagtgcaagttaacctcttggcaaattcagcaccccgtccgtcctttgttaaaattccggagacaggtatggacactgccaaaaatatttcagaatcaagtcaagtgttgaaaaagagaacaagaaggagacataggaggaaaccgaatctaatgcaaaatactggcgtagttcataatttgcctcaggaacatgggcaggttgacactaactatataaaaagattgtcaactttaagtttatcagatgaaagaggcagcgatgtattagttatttcatctggagcggttaaaactaattgtgaagaggacatcagatcaggaatttcacatggctcaattgtgagaaaaccgtttaggtatacagggaaaaaacttcttattcttgacattaatggacttattgcggatatagtctctcctcctccaaagggatttgcatctgacataaggattgcaggacgagcaattttcaagaggccatactatcttgattttcttaagttctgctttgagcgtttcgaagtgggtgtgtggtcttcaagatccaagaaaattgtggaaagagtggttgattatctaatgggcgatctaaagcacaagttgctgttttgttgggatctatcccactgcactacaacagggttcagaactctagaaaataagcacaagaccttggtgtttaaggatctgaggagaatttgggaagaagatgactctggtcttccatgggagaagggcgtatatgatgaatctaatacgttattgttggatgattctccgtacaaagccctgcttaatcctgcacatactggggtctttccttatccatacacgtttcatggagggtgcgacaatgcattaggtcctggaggtcgtcttcggacgtatttggaaaagttggccgcagctgaaaatctacaagagtttgtagaccaacatccatttggtcaaagacctattactgaaagaagtgcatcttgggacttttacctcagggtactcgatacggtgtattccgtaaaaaccaaccagataacctggaattctacttgtaagcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

358

Amino Acids

40.81

Weight (kDa)

9.28

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29760 AT3G29760 AT3G29760 AT3G29760 AT3G29760
fragaria_vesca	FvH4_5g13671 FvH4_5g13671 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700
malus_domestica	MD06G1203100.v1.1 MD09G1068500.v1.1 MD14G1213700.v1.1 MD17G1061400.v1.1
prunus_persica	Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.5G206600_v2.0.a1
pyrus_communis	pycom06g18090 pycom12433g00100 pycom14g17710 pycom17g06130
rosa_chinensis	RchiOBHm_Chr1g0330571 RchiOBHm_Chr1g0330791 RchiOBHm_Chr1g0330841 RchiOBHm_Chr2g0165581 RchiOBHm_Chr7g0183261 RchiOBHm_Chr7g0183271
rosa_laevigata	RLG00000005061 RLG00000021541
rosa_multiflora	Rmu_sc0000815.1_g000003 Rmu_sc0005425.1_g000020 Rmu_sc0008744.1_g000011 Rmu_sc0014529.1_g000002 Rmu_sc0018426.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085710 Rroxscaffold_3G00270610
rosa_rugosa	Rorug02G0516200 Rorug05G0496600 Rorug05G0496600 Rorug05G0496600 Rorug06G0455700
rosa_samantha	Rh1AG107500 Rh1AG107600 Rh1AG111800 Rh1CG103400 Rh1CG106100 Rh1CG107100 Rh1DG113000 Rh2AG582300 Rh2BG594500 Rh2CG564400 Rh2DG604400 Rh7AG057700 Rh7BG057500 Rh7CG059100 Rh7DG057300
rosa_wichuraiana	Rw0G004370 Rw0G016070 Rw1G009080 Rw2G048580 Rw7G004720 Rw7G004730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	202
AccBSI	CCGCTC	1 cut(s)	299
AccI	GTMKAC	2 cut(s)	374, 945
AccIII	TCCGGA	1 cut(s)	70
AciI	CCGC	3 cut(s)	299, 419, 918
AclWI	GGATC	3 cut(s)	552, 639, 708
AcoI	YGGCCR	1 cut(s)	915
AcsI	RAATTY	5 cut(s)	37, 66, 336, 711, 1057
AfaI	GTAC	2 cut(s)	797, 1014
AfiI	CCNNNNNNNGG	2 cut(s)	77, 443
AflII	CTTAAG	1 cut(s)	512
AflIII	ACRYGT	1 cut(s)	846
AgsI	TTSAA	3 cut(s)	124, 487, 555
AjnI	CCWGG	2 cut(s)	880, 1052
AjuI	GAANNNNNNNTTGG	2 cut(s)	976, 1008
AluBI	AGCT	1 cut(s)	923
AluI	AGCT	1 cut(s)	923
Alw26I	GTCTC	3 cut(s)	68, 136, 433
AlwI	GGATC	3 cut(s)	552, 639, 708
Aor13HI	TCCGGA	1 cut(s)	70
AoxI	GGCC	2 cut(s)	491, 915
ApeKI	GCWGC	2 cut(s)	270, 920
ApoI	RAATTY	5 cut(s)	37, 66, 336, 711, 1057
AseI	ATTAAT	1 cut(s)	405
AspS9I	GGNCC	1 cut(s)	878
AsuHPI	GGTGA	1 cut(s)	23
AsuII	TTCGAA	1 cut(s)	534
AvaII	GGWCC	1 cut(s)	878
AxyI	CCTNAGG	2 cut(s)	198, 1007
BbsI	GAAGAC	3 cut(s)	543, 728, 884
BbvI	GCAGC	2 cut(s)	282, 932
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BciT130I	CCWGG	2 cut(s)	882, 1054
BcoDI	GTCTC	3 cut(s)	68, 136, 433
BfaI	CTAG	1 cut(s)	668
BfrI	CTTAAG	1 cut(s)	512
BfuAI	ACCTGC	1 cut(s)	202
BisI	GCNGC	3 cut(s)	271, 918, 921
BlsI	GCNGC	3 cut(s)	272, 919, 922
Bme1390I	CCNGG	2 cut(s)	882, 1054
Bme18I	GGWCC	1 cut(s)	878
BmgT120I	GGNCC	1 cut(s)	878
BmrFI	CCNGG	2 cut(s)	882, 1054
BmrI	ACTGGG	1 cut(s)	834
BmsI	GCATC	2 cut(s)	461, 998
BmuI	ACTGGG	1 cut(s)	834
BoxI	GACNNNNGTC	1 cut(s)	732
BpiI	GAAGAC	3 cut(s)	543, 728, 884
BpmI	CTGGAG	2 cut(s)	315, 903
Bpu14I	TTCGAA	1 cut(s)	534
BsaBI	GATNNNNATC	1 cut(s)	451
BsaJI	CCNNGG	3 cut(s)	6, 687, 740
BsaWI	WCCGGW	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 443
Bse1I	ACTGG	2 cut(s)	181, 829
Bse21I	CCTNAGG	2 cut(s)	198, 1007
Bse8I	GATNNNNATC	1 cut(s)	451
BseAI	TCCGGA	1 cut(s)	70
BseBI	CCWGG	2 cut(s)	882, 1054
BseDI	CCNNGG	3 cut(s)	6, 687, 740
BseGI	GGATG	2 cut(s)	790, 952
BseJI	GATNNNNATC	1 cut(s)	451
BseLI	CCNNNNNNNGG	2 cut(s)	77, 443
BseMII	CTCAG	3 cut(s)	212, 695, 1021
BseNI	ACTGG	2 cut(s)	181, 829
BseRI	GAGGAG	3 cut(s)	423, 426, 721
BseXI	GCAGC	2 cut(s)	282, 932
BsgI	GTGCAG	2 cut(s)	628, 801
BshFI	GGCC	2 cut(s)	493, 917
BsiSI	CCGG	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	1010
BslI	CCNNNNNNNGG	2 cut(s)	77, 443
BsmAI	GTCTC	3 cut(s)	68, 136, 433
BsmFI	GGGAC	1 cut(s)	1010
BsnI	GGCC	2 cut(s)	493, 917
Bsp119I	TTCGAA	1 cut(s)	534
Bsp13I	TCCGGA	1 cut(s)	70
Bsp143I	GATC	5 cut(s)	329, 557, 601, 631, 700
Bsp19I	CCATGG	1 cut(s)	740
BspACI	CCGC	3 cut(s)	299, 419, 918
BspANI	GGCC	2 cut(s)	493, 917
BspCNI	CTCAG	3 cut(s)	211, 696, 1020
BspEI	TCCGGA	1 cut(s)	70
BspMI	ACCTGC	1 cut(s)	202
BspPI	GGATC	3 cut(s)	552, 639, 708
BspT104I	TTCGAA	1 cut(s)	534
BspTI	CTTAAG	1 cut(s)	512
BsrBI	CCGCTC	1 cut(s)	299
BsrI	ACTGG	2 cut(s)	181, 829
BssECI	CCNNGG	3 cut(s)	6, 687, 740
BssMI	GATC	5 cut(s)	329, 557, 601, 631, 700
BssNAI	GTATAC	1 cut(s)	375
BssT1I	CCWWGG	3 cut(s)	6, 687, 740
Bst1107I	GTATAC	1 cut(s)	375
Bst2UI	CCWGG	2 cut(s)	882, 1054
Bst4CI	ACNGT	2 cut(s)	366, 1024
Bst6I	CTCTTC	1 cut(s)	312
BstAFI	CTTAAG	1 cut(s)	512
BstAPI	GCANNNNNTGC	1 cut(s)	616
BstBI	TTCGAA	1 cut(s)	534
BstDEI	CTNAG	3 cut(s)	198, 704, 1007
BstDSI	CCRYGG	1 cut(s)	740
BstF5I	GGATG	2 cut(s)	790, 952
BstKTI	GATC	5 cut(s)	332, 560, 604, 634, 703
BstMAI	GTCTC	3 cut(s)	68, 136, 433
BstMBI	GATC	5 cut(s)	329, 557, 601, 631, 700
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 476, 616
BstNI	CCWGG	2 cut(s)	882, 1054
BstPAI	GACNNNNGTC	1 cut(s)	732
BstSCI	CCNGG	2 cut(s)	880, 1052
BstV1I	GCAGC	2 cut(s)	282, 932
BstV2I	GAAGAC	3 cut(s)	543, 728, 884
BstX2I	RGATCY	3 cut(s)	557, 631, 700
BstYI	RGATCY	3 cut(s)	557, 631, 700
BstZ17I	GTATAC	1 cut(s)	375
Bsu36I	CCTNAGG	2 cut(s)	198, 1007
BsuRI	GGCC	2 cut(s)	493, 917
BtgI	CCRYGG	1 cut(s)	740
BtgZI	GCGATG	1 cut(s)	288
BtsCI	GGATG	2 cut(s)	790, 952
BtsI	GCAGTG	2 cut(s)	87, 640
BtsIMutI	CAGTG	2 cut(s)	87, 640
BveI	ACCTGC	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	878
Csp6I	GTAC	2 cut(s)	796, 1013
CviAII	CATG	4 cut(s)	206, 344, 741, 854
CviJI	RGCY	5 cut(s)	348, 493, 803, 917, 923
CviKI_1	RGCY	5 cut(s)	348, 493, 803, 917, 923
CviQI	GTAC	2 cut(s)	796, 1013
DdeI	CTNAG	3 cut(s)	198, 704, 1007
DpnI	GATC	5 cut(s)	331, 559, 603, 633, 702
DpnII	GATC	5 cut(s)	329, 557, 601, 631, 700
EaeI	YGGCCR	1 cut(s)	915
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
Eco130I	CCWWGG	3 cut(s)	6, 687, 740
Eco47I	GGWCC	1 cut(s)	878
Eco81I	CCTNAGG	2 cut(s)	198, 1007
EcoO109I	RGGNCCY	1 cut(s)	878
EcoRI	GAATTC	1 cut(s)	1057
EcoRII	CCWGG	2 cut(s)	880, 1052
EcoT14I	CCWWGG	3 cut(s)	6, 687, 740
EcoT22I	ATGCAT	1 cut(s)	874
ErhI	CCWWGG	3 cut(s)	6, 687, 740
FaeI	CATG	4 cut(s)	209, 347, 744, 857
FalI	AAGNNNNNCTT	6 cut(s)	506, 538, 792, 824, 976, 1008
FaqI	GGGAC	1 cut(s)	1010
FatI	CATG	4 cut(s)	205, 343, 740, 853
FblI	GTMKAC	2 cut(s)	374, 945
Fnu4HI	GCNGC	3 cut(s)	271, 918, 921
FokI	GGATG	2 cut(s)	797, 939
Fsp4HI	GCNGC	3 cut(s)	271, 918, 921
FspBI	CTAG	1 cut(s)	668
GluI	GCNGC	3 cut(s)	271, 918, 921
GsuI	CTGGAG	2 cut(s)	315, 903
HaeIII	GGCC	2 cut(s)	493, 917
HapII	CCGG	1 cut(s)	71
Hin1II	CATG	4 cut(s)	209, 347, 744, 857
HincII	GTYRAC	3 cut(s)	25, 217, 243
HindII	GTYRAC	3 cut(s)	25, 217, 243
HinfI	GANTC	5 cut(s)	107, 160, 728, 764, 788
HpaI	GTTAAC	1 cut(s)	25
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	5 cut(s)	25, 217, 243, 375, 946
Hpy188I	TCNGA	7 cut(s)	106, 259, 329, 457, 662, 705, 897
Hpy188III	TCNNGA	9 cut(s)	71, 200, 294, 333, 398, 487, 503, 555, 668
Hpy8I	GTNNAC	5 cut(s)	25, 217, 243, 375, 946
HpyAV	CCTTC	2 cut(s)	132, 742
HpyCH4III	ACNGT	2 cut(s)	366, 1024
HpyCH4IV	ACGT	3 cut(s)	773, 848, 899
HpyCH4V	TGCA	8 cut(s)	19, 169, 452, 470, 645, 818, 872, 989
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 476, 616
HpyF3I	CTNAG	3 cut(s)	198, 704, 1007
HpySE526I	ACGT	3 cut(s)	773, 848, 899
Hsp92II	CATG	4 cut(s)	209, 347, 744, 857
Kpn2I	TCCGGA	1 cut(s)	70
KspAI	GTTAAC	1 cut(s)	25
Kzo9I	GATC	5 cut(s)	329, 557, 601, 631, 700
LmnI	GCTCC	1 cut(s)	296
Lsp1109I	GCAGC	2 cut(s)	282, 932
LweI	GCATC	2 cut(s)	461, 998
MaeI	CTAG	1 cut(s)	668
MaeII	ACGT	3 cut(s)	773, 848, 899
MalI	GATC	5 cut(s)	331, 559, 603, 633, 702
MbiI	CCGCTC	1 cut(s)	299
MboI	GATC	5 cut(s)	329, 557, 601, 631, 700
MboII	GAAGA	6 cut(s)	329, 543, 728, 731, 734, 884
MfeI	CAATTG	1 cut(s)	351
MflI	RGATCY	3 cut(s)	557, 631, 700
MlyI	GAGTC	1 cut(s)	722
MmeI	TCCRAC	1 cut(s)	762
Mph1103I	ATGCAT	1 cut(s)	874
MroI	TCCGGA	1 cut(s)	70
MseI	TTAA	8 cut(s)	24, 63, 248, 303, 405, 513, 696, 810
MspA1I	CMGCKG	1 cut(s)	923
MspCI	CTTAAG	1 cut(s)	512
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	2 cut(s)	882, 1054
MunI	CAATTG	1 cut(s)	351
MvaI	CCWGG	2 cut(s)	882, 1054
MwoI	GCNNNNNNNGC	3 cut(s)	41, 476, 616
NcoI	CCATGG	1 cut(s)	740
NdeII	GATC	5 cut(s)	329, 557, 601, 631, 700
NlaIII	CATG	4 cut(s)	209, 347, 744, 857
NsiI	ATGCAT	1 cut(s)	874
NspV	TTCGAA	1 cut(s)	534
PfeI	GAWTC	4 cut(s)	107, 160, 764, 788
PfoI	TCCNGGA	1 cut(s)	880
PkrI	GCNGC	3 cut(s)	272, 919, 922
PleI	GAGTC	1 cut(s)	722
PpsI	GAGTC	1 cut(s)	722
PpuMI	RGGWCCY	1 cut(s)	878
PshAI	GACNNNNGTC	1 cut(s)	732
PshBI	ATTAAT	1 cut(s)	405
Psp5II	RGGWCCY	1 cut(s)	878
Psp6I	CCWGG	2 cut(s)	880, 1052
PspGI	CCWGG	2 cut(s)	880, 1052
PspPI	GGNCC	1 cut(s)	878
PspPPI	RGGWCCY	1 cut(s)	878
PsuI	RGATCY	3 cut(s)	557, 631, 700
PvuII	CAGCTG	1 cut(s)	923
RsaI	GTAC	2 cut(s)	797, 1014
RsaNI	GTAC	2 cut(s)	796, 1013
SaqAI	TTAA	8 cut(s)	24, 63, 248, 303, 405, 513, 696, 810
SatI	GCNGC	3 cut(s)	271, 918, 921
Sau3AI	GATC	5 cut(s)	329, 557, 601, 631, 700
Sau96I	GGNCC	1 cut(s)	878
SchI	GAGTC	1 cut(s)	722
ScrFI	CCNGG	2 cut(s)	882, 1054
SfaNI	GCATC	2 cut(s)	461, 998
SfuI	TTCGAA	1 cut(s)	534
SinI	GGWCC	1 cut(s)	878
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
SsiI	CCGC	3 cut(s)	299, 419, 918
SspI	AATATT	1 cut(s)	100
SspMI	CTAG	1 cut(s)	668
StyD4I	CCNGG	2 cut(s)	880, 1052
StyI	CCWWGG	3 cut(s)	6, 687, 740
TaaI	ACNGT	2 cut(s)	366, 1024
TaiI	ACGT	3 cut(s)	776, 851, 902
TaqI	TCGA	2 cut(s)	534, 1017
TauI	GCSGC	1 cut(s)	920
TfiI	GAWTC	4 cut(s)	107, 160, 764, 788
Tru1I	TTAA	8 cut(s)	24, 63, 248, 303, 405, 513, 696, 810
Tru9I	TTAA	8 cut(s)	24, 63, 248, 303, 405, 513, 696, 810
TscAI	CASTG	2 cut(s)	94, 647
TseI	GCWGC	2 cut(s)	270, 920
TspDTI	ATGAA	5 cut(s)	176, 276, 279, 777, 842
TspGWI	ACGGA	3 cut(s)	42, 783, 1021
TspRI	CASTG	2 cut(s)	94, 647
Vha464I	CTTAAG	1 cut(s)	512
VpaK11BI	GGWCC	1 cut(s)	878
VspI	ATTAAT	1 cut(s)	405
XapI	RAATTY	5 cut(s)	37, 66, 336, 711, 1057
XbaI	TCTAGA	1 cut(s)	667
XcmI	CCANNNNNNNNNTGG	2 cut(s)	568, 956
XmiI	GTMKAC	2 cut(s)	374, 945
XspI	CTAG	1 cut(s)	668
Zsp2I	ATGCAT	1 cut(s)	874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.