Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000879

Physical Location & Seq

Genomic Coordinates Reverse (-)

67839521 .. 67842737

Gene Structure 3217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0496600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1749 bp

ATGGTGGTGAAAGTAGCTTCGACCTGTTTGCACTGGTCGCAGCCAATTGTTCCTCACTCTACGGCTTCCTCTCAGACCCTAGCCTCTTCAATTTCGTCTCCGTCGTCAAATAGGCGGAGCCGCCGCGGCGACGGCGGAGCTCTGTTGTGTCTCTACGTTCAGAAGTTGAACCGGTCGGCTCTGTTCGGCACCCCGTCGACTAGGCTACGCCGGTCGCAGTCTTGCGAGTCTCAGAAGGCGCCGAGAAATCGAGCCATCAGACGCGGTTTCAGTGCGAGCCTGGACGCCTTCTCCGACGAAGAATTCTCGAAGAAGATTCAGGAATTGGCTCTCAGATTCCAGCTCTCCGACGACGATACCGCGGTTAGTTCAGAACCAGAGACTGCGTTTTCTGATCTAACAGAGACTCACGGCGTCAGCGGCTTAGACGAAGACGATTTCGACGTTTTGAGCGACGATTCGTCGAGGATGAGGTTTCTACAGAGCAACAGTCAGTTCCCGCACGATTTGGAGCCTCCGTGGCCGTCGGATTGGCAACGGAGGGACGAGATTGTCCCGGAGGCCAGCATCGAACGGAAGGCCAACAGCGTCGACCTCCCCCTTTCGCTCCGAATCATAAAGAGGAAGCTGCAATGGCAGCAGGATGGCTACTTCAGAGACGTCGGCGAATCGGCCTATTGCTCGATGAAGAAGGCCTTTTCTTGCATGGTGTTCATAATCCGAGAGCTCCATAGCTCTTGTCTACAGATGCGAGAGGCTCTGTTCTACGAAGATTTACAGGGGATTCTAGGCCGAGTGCAGAAAGAGATGCACGATTCGTTTGTGTGGCTGTTTCAGCAAGTTTTCTCTCAAACACCGACTCTCATGGTGTACGTCATGATTCTATTAGCCAATTTCACCGTCCACTCCTTAGGCCACAACGCCGCCATTGCAGCTCCTCCACCGGCTTATGCAGCCACAACAGAAACAGTTTCAATCATGGACGTTCAAGATGACCAGAAATCTCCCCAATTCGATTCCTCAACAAGTAAATCGTTCTCTGTTTCGTCATCCTCCAGTGGGAACACGACTCCCATTGGAGGAAACAACGGCGGAGGCGGGAATGTCCCGCCGGTCGGGAGCGGCACAGATGGTGATGGTGGGTTTGACCGTTCCGACCAGTACCGGACAATCGTCCCCGACGGTGCTTCCCAATTGTCTATGGGGACAACCAGAGAAGCAGAGTCGGTTTCGGAGCAAGAGAGCAGAGAAGAGATGGCTCTGTGGAATTCAGTAGCGGAAGAAGCAAAACAGATGCAAGGCAGAGACGAATCTCTAGACCAAGAAACCATCCAGAGATTCGTCTCGCCGGTCACCGTAGATATGGAAAGTGATGATTACGCAGAGTACTTGAGAACTGAGATGCTCTACCAATCGGAGTTATCCAAGGAACCCAGCAATTCTCTCCTCCTCTCCAATTACGCTCAGTTCCTCTACCAAGTCGCTCATGACTATGATAGAGCGGAGGGGTACTTCAAGAGGGCAGTGGGGGTTGAGCCGGCGGACGCGGAGGCGTACAATAAGTATGCCACCTTCCTTTGGAGGGCGAGAAACGACTTGTGGGCAGCGGAGGAGACCTACTTGGAAGCCATTAACACTGATCCGAGCAACTCTTACTATGCTGCTAATTACGCTCATTTTCTCTGGAACACGGGCGGCGAGGACACGTGTTTCCCTCTAGACTCGCCGGACGCCGACCAAGACGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

582

Amino Acids

64.91

Weight (kDa)

4.68

Isoelectric Point (pI)

62.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29760 AT3G29760 AT3G29760 AT3G29760 AT3G29760
fragaria_vesca	FvH4_5g13671 FvH4_5g13671 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700
malus_domestica	MD06G1203100.v1.1 MD09G1068500.v1.1 MD14G1213700.v1.1 MD17G1061400.v1.1
prunus_persica	Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.5G206600_v2.0.a1
pyrus_communis	pycom06g18090 pycom12433g00100 pycom14g17710 pycom17g06130
rosa_chinensis	RchiOBHm_Chr1g0330571 RchiOBHm_Chr1g0330791 RchiOBHm_Chr1g0330841 RchiOBHm_Chr2g0165581 RchiOBHm_Chr7g0183261 RchiOBHm_Chr7g0183271
rosa_laevigata	RLG00000005061 RLG00000021541
rosa_multiflora	Rmu_sc0000815.1_g000003 Rmu_sc0005425.1_g000020 Rmu_sc0008744.1_g000011 Rmu_sc0014529.1_g000002 Rmu_sc0018426.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085710 Rroxscaffold_3G00270610
rosa_rugosa	Rorug02G0516200 Rorug05G0496600 Rorug05G0496600 Rorug05G0496600 Rorug06G0455700
rosa_samantha	Rh1AG107500 Rh1AG107600 Rh1AG111800 Rh1CG103400 Rh1CG106100 Rh1CG107100 Rh1DG113000 Rh2AG582300 Rh2BG594500 Rh2CG564400 Rh2DG604400 Rh7AG057700 Rh7BG057500 Rh7CG059100 Rh7DG057300
rosa_wichuraiana	Rw0G004370 Rw0G016070 Rw1G009080 Rw2G048580 Rw7G004720 Rw7G004730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	551
AatII	GACGTC	1 cut(s)	663
AccB1I	GGYRCC	2 cut(s)	188, 238
AccBSI	CCGCTC	2 cut(s)	1122, 1502
AccI	GTMKAC	3 cut(s)	197, 591, 742
AccII	CGCG	4 cut(s)	126, 264, 362, 1547
AclWI	GGATC	1 cut(s)	1634
AcoI	YGGCCR	1 cut(s)	521
AcsI	RAATTY	2 cut(s)	302, 1267
AcuI	CTGAAG	1 cut(s)	637
AcvI	CACGTG	1 cut(s)	1707
AcyI	GRCGYC	5 cut(s)	239, 285, 414, 660, 1731
AfaI	GTAC	5 cut(s)	872, 1163, 1388, 1511, 1556
AfiI	CCNNNNNNNGG	5 cut(s)	1059, 1079, 1115, 1578, 1582
AflIII	ACRYGT	2 cut(s)	1704, 1706
AgeI	ACCGGT	1 cut(s)	171
AgsI	TTSAA	5 cut(s)	90, 169, 975, 989, 1516
AhdI	GACNNNNNGTC	1 cut(s)	460
AjnI	CCWGG	1 cut(s)	279
AluBI	AGCT	7 cut(s)	17, 140, 343, 628, 727, 735, 935
AluI	AGCT	7 cut(s)	17, 140, 343, 628, 727, 735, 935
Alw21I	GWGCWC	2 cut(s)	142, 729
Alw26I	GTCTC	9 cut(s)	102, 155, 234, 374, 398, 651, 1299, 1348, 1607
AlwI	GGATC	1 cut(s)	1634
AlwNI	CAGNNNCTG	1 cut(s)	383
AoxI	GGCC	7 cut(s)	521, 561, 579, 672, 693, 790, 913
ApeKI	GCWGC	7 cut(s)	40, 628, 637, 932, 953, 1604, 1661
ApoI	RAATTY	2 cut(s)	302, 1267
AsiGI	ACCGGT	1 cut(s)	171
AspLEI	GCGC	1 cut(s)	241
AsuC2I	CCSGG	1 cut(s)	557
AsuHPI	GGTGA	4 cut(s)	19, 889, 1145, 1345
AxyI	CCTNAGG	1 cut(s)	910
BaeI	ACNNNNGTAYC	2 cut(s)	348, 381
BanI	GGYRCC	2 cut(s)	188, 238
BanII	GRGCYC	2 cut(s)	142, 729
BarI	GAAGNNNNNNTAC	2 cut(s)	1556, 1588
BbrPI	CACGTG	1 cut(s)	1707
BbsI	GAAGAC	1 cut(s)	438
Bbv12I	GWGCWC	2 cut(s)	142, 729
BbvI	GCAGC	7 cut(s)	52, 615, 649, 944, 965, 1616, 1648
BccI	CCATC	6 cut(s)	263, 638, 1124, 1130, 1249, 1337
BceAI	ACGGC	5 cut(s)	78, 148, 427, 508, 1105
BcgI	CGANNNNNNTGC	2 cut(s)	10, 44
BciT130I	CCWGG	1 cut(s)	281
BcnI	CCSGG	1 cut(s)	557
BcoDI	GTCTC	9 cut(s)	102, 155, 234, 374, 398, 651, 1299, 1348, 1607
BfaI	CTAG	5 cut(s)	80, 201, 788, 1316, 1718
BfmI	CTRYAG	2 cut(s)	479, 743
BfoI	RGCGCY	1 cut(s)	242
BglI	GCCNNNNNGGC	2 cut(s)	126, 520
BmcAI	AGTACT	1 cut(s)	1388
Bme1390I	CCNGG	2 cut(s)	281, 557
BmeRI	GACNNNNNGTC	1 cut(s)	460
BmiI	GGNNCC	5 cut(s)	119, 190, 240, 513, 1431
BmrFI	CCNGG	2 cut(s)	281, 557
BmsI	GCATC	5 cut(s)	576, 738, 798, 1284, 1392
BoxI	GACNNNNGTC	1 cut(s)	1172
BpiI	GAAGAC	1 cut(s)	438
BpmI	CTGGAG	1 cut(s)	1039
BpuEI	CTTGAG	1 cut(s)	1411
BpuMI	CCSGG	1 cut(s)	557
BsaAI	YACGTR	1 cut(s)	1707
BsaHI	GRCGYC	5 cut(s)	239, 285, 414, 660, 1731
BsaI	GGTCTC	1 cut(s)	1607
BsaJI	CCNNGG	4 cut(s)	124, 360, 518, 1425
BsaWI	WCCGGW	2 cut(s)	171, 1164
BsaXI	ACNNNNNCTCC	4 cut(s)	275, 305, 503, 533
Bsc4I	CCNNNNNNNGG	5 cut(s)	1059, 1079, 1115, 1578, 1582
Bse118I	RCCGGY	6 cut(s)	171, 210, 943, 1111, 1348, 1537
Bse1I	ACTGG	3 cut(s)	38, 1056, 1159
Bse21I	CCTNAGG	1 cut(s)	910
Bse3DI	GCAATG	2 cut(s)	638, 927
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	4 cut(s)	124, 360, 518, 1425
BseGI	GGATG	4 cut(s)	474, 649, 1049, 1329
BseLI	CCNNNNNNNGG	5 cut(s)	1059, 1079, 1115, 1578, 1582
BseMI	GCAATG	2 cut(s)	638, 927
BseMII	CTCAG	5 cut(s)	86, 245, 346, 1389, 1478
BseNI	ACTGG	3 cut(s)	38, 1056, 1159
BseRI	GAGGAG	4 cut(s)	927, 1436, 1439, 1625
BseXI	GCAGC	7 cut(s)	52, 615, 649, 944, 965, 1616, 1648
BseYI	CCCAGC	1 cut(s)	1433
BsgI	GTGCAG	1 cut(s)	818
Bsh1236I	CGCG	4 cut(s)	126, 264, 362, 1547
Bsh1285I	CGRYCG	3 cut(s)	176, 215, 1116
BshFI	GGCC	7 cut(s)	523, 563, 581, 674, 695, 792, 915
BshNI	GGYRCC	2 cut(s)	188, 238
BshTI	ACCGGT	1 cut(s)	171
BsiEI	CGRYCG	3 cut(s)	176, 215, 1116
BsiHKAI	GWGCWC	2 cut(s)	142, 729
BsiSI	CCGG	9 cut(s)	172, 211, 557, 944, 1112, 1165, 1349, 1538, 1727
BslFI	GGGAC	5 cut(s)	539, 557, 1091, 1160, 1219
BslI	CCNNNNNNNGG	5 cut(s)	1059, 1079, 1115, 1578, 1582
BsmAI	GTCTC	9 cut(s)	102, 155, 234, 374, 398, 651, 1299, 1348, 1607
BsmBI	CGTCTC	4 cut(s)	102, 651, 1299, 1348
BsmFI	GGGAC	5 cut(s)	539, 557, 1091, 1160, 1219
BsnI	GGCC	7 cut(s)	523, 563, 581, 674, 695, 792, 915
Bso31I	GGTCTC	1 cut(s)	1607
Bsp1286I	GDGCHC	2 cut(s)	142, 729
Bsp143I	GATC	2 cut(s)	394, 1639
BspANI	GGCC	7 cut(s)	523, 563, 581, 674, 695, 792, 915
BspCNI	CTCAG	5 cut(s)	85, 244, 345, 1390, 1477
BspFNI	CGCG	4 cut(s)	126, 264, 362, 1547
BspHI	TCATGA	2 cut(s)	876, 1486
BspLI	GGNNCC	5 cut(s)	119, 190, 240, 513, 1431
BspPI	GGATC	1 cut(s)	1634
BspT107I	GGYRCC	2 cut(s)	188, 238
BspTNI	GGTCTC	1 cut(s)	1607
BsrBI	CCGCTC	2 cut(s)	1122, 1502
BsrDI	GCAATG	2 cut(s)	638, 927
BsrFI	RCCGGY	6 cut(s)	171, 210, 943, 1111, 1348, 1537
BsrI	ACTGG	3 cut(s)	38, 1056, 1159
BssAI	RCCGGY	6 cut(s)	171, 210, 943, 1111, 1348, 1537
BssECI	CCNNGG	4 cut(s)	124, 360, 518, 1425
BssMI	GATC	2 cut(s)	394, 1639
BssNI	GRCGYC	5 cut(s)	239, 285, 414, 660, 1731
BssT1I	CCWWGG	1 cut(s)	1425
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	6 cut(s)	491, 901, 970, 1151, 1184, 1357
Bst6I	CTCTTC	2 cut(s)	91, 1245
BstACI	GRCGYC	5 cut(s)	239, 285, 414, 660, 1731
BstBAI	YACGTR	1 cut(s)	1707
BstC8I	GCNNGC	3 cut(s)	277, 565, 1539
BstDEI	CTNAG	8 cut(s)	72, 231, 332, 424, 910, 1398, 1464, 1746
BstDSI	CCRYGG	3 cut(s)	124, 360, 518
BstEII	GGTNACC	1 cut(s)	1351
BstF5I	GGATG	4 cut(s)	474, 649, 1049, 1329
BstFNI	CGCG	4 cut(s)	126, 264, 362, 1547
BstH2I	RGCGCY	1 cut(s)	242
BstHHI	GCGC	1 cut(s)	241
BstKTI	GATC	2 cut(s)	397, 1642
BstMAI	GTCTC	9 cut(s)	102, 155, 234, 374, 398, 651, 1299, 1348, 1607
BstMBI	GATC	2 cut(s)	394, 1639
BstMCI	CGRYCG	3 cut(s)	176, 215, 1116
BstNI	CCWGG	1 cut(s)	281
BstPAI	GACNNNNGTC	1 cut(s)	1172
BstPI	GGTNACC	1 cut(s)	1351
BstSCI	CCNGG	2 cut(s)	279, 555
BstSFI	CTRYAG	2 cut(s)	479, 743
BstUI	CGCG	4 cut(s)	126, 264, 362, 1547
BstV1I	GCAGC	7 cut(s)	52, 615, 649, 944, 965, 1616, 1648
BstV2I	GAAGAC	1 cut(s)	438
Bsu36I	CCTNAGG	1 cut(s)	910
BsuRI	GGCC	7 cut(s)	523, 563, 581, 674, 695, 792, 915
BtgI	CCRYGG	3 cut(s)	124, 360, 518
BtsCI	GGATG	4 cut(s)	474, 649, 1049, 1329
BtsI	GCAGTG	1 cut(s)	1530
BtsIMutI	CAGTG	5 cut(s)	31, 277, 1063, 1530, 1635
Cac8I	GCNNGC	3 cut(s)	277, 565, 1539
CaiI	CAGNNNCTG	1 cut(s)	383
CciI	TCATGA	2 cut(s)	876, 1486
CfoI	GCGC	1 cut(s)	241
Cfr10I	RCCGGY	6 cut(s)	171, 210, 943, 1111, 1348, 1537
Cfr42I	CCGCGG	2 cut(s)	127, 363
CseI	GACGC	6 cut(s)	270, 293, 403, 577, 1553, 1739
Csp6I	GTAC	5 cut(s)	871, 1162, 1387, 1510, 1555
CspAI	ACCGGT	1 cut(s)	171
CviAII	CATG	5 cut(s)	706, 865, 877, 979, 1487
CviQI	GTAC	5 cut(s)	871, 1162, 1387, 1510, 1555
DdeI	CTNAG	8 cut(s)	72, 231, 332, 424, 910, 1398, 1464, 1746
DinI	GGCGCC	1 cut(s)	240
DpnI	GATC	2 cut(s)	396, 1641
DpnII	GATC	2 cut(s)	394, 1639
DrdI	GACNNNNNNGTC	1 cut(s)	551
DriI	GACNNNNNGTC	1 cut(s)	460
DseDI	GACNNNNNNGTC	1 cut(s)	551
EaeI	YGGCCR	1 cut(s)	521
Eam1104I	CTCTTC	2 cut(s)	91, 1245
Eam1105I	GACNNNNNGTC	1 cut(s)	460
EarI	CTCTTC	2 cut(s)	91, 1245
EciI	GGCGGA	4 cut(s)	130, 150, 1107, 1556
Ecl136II	GAGCTC	2 cut(s)	140, 727
Eco130I	CCWWGG	1 cut(s)	1425
Eco147I	AGGCCT	1 cut(s)	695
Eco24I	GRGCYC	2 cut(s)	142, 729
Eco31I	GGTCTC	1 cut(s)	1607
Eco53kI	GAGCTC	2 cut(s)	140, 727
Eco57I	CTGAAG	1 cut(s)	637
Eco72I	CACGTG	1 cut(s)	1707
Eco81I	CCTNAGG	1 cut(s)	910
Eco91I	GGTNACC	1 cut(s)	1351
EcoICRI	GAGCTC	2 cut(s)	140, 727
EcoO65I	GGTNACC	1 cut(s)	1351
EcoRI	GAATTC	2 cut(s)	302, 1267
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	1425
EcoT38I	GRGCYC	2 cut(s)	142, 729
EgeI	GGCGCC	1 cut(s)	240
EheI	GGCGCC	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	1425
Esp3I	CGTCTC	4 cut(s)	102, 651, 1299, 1348
FaeI	CATG	5 cut(s)	709, 868, 880, 982, 1490
FalI	AAGNNNNNCTT	2 cut(s)	680, 712
FaqI	GGGAC	5 cut(s)	539, 557, 1091, 1160, 1219
FatI	CATG	5 cut(s)	705, 864, 876, 978, 1486
FauI	CCCGC	3 cut(s)	507, 1091, 1116
FblI	GTMKAC	3 cut(s)	197, 591, 742
FokI	GGATG	4 cut(s)	481, 656, 1036, 1316
FriOI	GRGCYC	2 cut(s)	142, 729
FspBI	CTAG	5 cut(s)	80, 201, 788, 1316, 1718
GlaI	GCGC	1 cut(s)	240
GsaI	CCCAGC	1 cut(s)	1437
GsuI	CTGGAG	1 cut(s)	1039
HaeII	RGCGCY	1 cut(s)	242
HaeIII	GGCC	7 cut(s)	523, 563, 581, 674, 695, 792, 915
HapII	CCGG	9 cut(s)	172, 211, 557, 944, 1112, 1165, 1349, 1538, 1727
HgaI	GACGC	6 cut(s)	270, 293, 403, 577, 1553, 1739
HhaI	GCGC	1 cut(s)	241
Hin1I	GRCGYC	5 cut(s)	239, 285, 414, 660, 1731
Hin1II	CATG	5 cut(s)	709, 868, 880, 982, 1490
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HincII	GTYRAC	2 cut(s)	198, 592
HindII	GTYRAC	2 cut(s)	198, 592
HpaII	CCGG	9 cut(s)	172, 211, 557, 944, 1112, 1165, 1349, 1538, 1727
HphI	GGTGA	4 cut(s)	19, 889, 1145, 1345
Hpy166II	GTNNAC	5 cut(s)	198, 592, 743, 871, 904
Hpy8I	GTNNAC	5 cut(s)	198, 592, 743, 871, 904
HpyAV	CCTTC	5 cut(s)	229, 298, 571, 685, 1582
HpyCH4III	ACNGT	6 cut(s)	491, 901, 970, 1151, 1184, 1357
HpyCH4IV	ACGT	6 cut(s)	156, 444, 660, 873, 984, 1706
HpyCH4V	TGCA	8 cut(s)	31, 631, 705, 799, 811, 932, 953, 1297
HpyF3I	CTNAG	8 cut(s)	72, 231, 332, 424, 910, 1398, 1464, 1746
HpySE526I	ACGT	6 cut(s)	156, 444, 660, 873, 984, 1706
Hsp92I	GRCGYC	5 cut(s)	239, 285, 414, 660, 1731
Hsp92II	CATG	5 cut(s)	709, 868, 880, 982, 1490
HspAI	GCGC	1 cut(s)	239
KasI	GGCGCC	1 cut(s)	238
KroI	GCCGGC	1 cut(s)	1537
KroNI	GCCGGC	1 cut(s)	1539
KspI	CCGCGG	2 cut(s)	127, 363
Kzo9I	GATC	2 cut(s)	394, 1639
LmnI	GCTCC	8 cut(s)	117, 137, 511, 612, 732, 940, 1119, 1234
Lsp1109I	GCAGC	7 cut(s)	52, 615, 649, 944, 965, 1616, 1648
LweI	GCATC	5 cut(s)	576, 738, 798, 1284, 1392
MaeI	CTAG	5 cut(s)	80, 201, 788, 1316, 1718
MaeII	ACGT	6 cut(s)	156, 444, 660, 873, 984, 1706
MaeIII	GTNAC	1 cut(s)	1351
MalI	GATC	2 cut(s)	396, 1641
MbiI	CCGCTC	2 cut(s)	1122, 1502
MboI	GATC	2 cut(s)	394, 1639
MboII	GAAGA	9 cut(s)	78, 311, 322, 325, 443, 700, 782, 1262, 1292
MfeI	CAATTG	2 cut(s)	45, 1193
MhlI	GDGCHC	2 cut(s)	142, 729
Mly113I	GGCGCC	1 cut(s)	239
MlyI	GAGTC	6 cut(s)	236, 400, 853, 1063, 1232, 1715
MmeI	TCCRAC	4 cut(s)	318, 372, 507, 1179
MroNI	GCCGGC	1 cut(s)	1537
MseI	TTAA	1 cut(s)	1632
MslI	CAYNNNNRTG	1 cut(s)	1491
MspA1I	CMGCKG	4 cut(s)	126, 362, 420, 1607
MspI	CCGG	9 cut(s)	172, 211, 557, 944, 1112, 1165, 1349, 1538, 1727
MspR9I	CCNGG	2 cut(s)	281, 557
MunI	CAATTG	2 cut(s)	45, 1193
MvaI	CCWGG	1 cut(s)	281
MvnI	CGCG	4 cut(s)	126, 264, 362, 1547
NaeI	GCCGGC	1 cut(s)	1539
NarI	GGCGCC	1 cut(s)	239
NciI	CCSGG	1 cut(s)	557
NdeII	GATC	2 cut(s)	394, 1639
NgoMIV	GCCGGC	1 cut(s)	1537
NlaIII	CATG	5 cut(s)	709, 868, 880, 982, 1490
NlaIV	GGNNCC	5 cut(s)	119, 190, 240, 513, 1431
NmeAIII	GCCGAG	2 cut(s)	267, 818
NmuCI	GTSAC	1 cut(s)	1351
PagI	TCATGA	2 cut(s)	876, 1486
PceI	AGGCCT	1 cut(s)	695
PcsI	WCGNNNNNNNCGW	4 cut(s)	101, 291, 441, 450
PdiI	GCCGGC	1 cut(s)	1539
PfoI	TCCNGGA	1 cut(s)	555
PinAI	ACCGGT	1 cut(s)	171
PleI	GAGTC	6 cut(s)	235, 400, 853, 1063, 1231, 1715
PluTI	GGCGCC	1 cut(s)	242
PmaCI	CACGTG	1 cut(s)	1707
PmlI	CACGTG	1 cut(s)	1707
PpsI	GAGTC	6 cut(s)	235, 400, 853, 1063, 1231, 1715
Ppu21I	YACGTR	1 cut(s)	1707
PshAI	GACNNNNGTC	1 cut(s)	1172
Psp124BI	GAGCTC	2 cut(s)	142, 729
Psp6I	CCWGG	1 cut(s)	279
PspCI	CACGTG	1 cut(s)	1707
PspEI	GGTNACC	1 cut(s)	1351
PspFI	CCCAGC	1 cut(s)	1433
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	5 cut(s)	119, 190, 240, 513, 1431
PstNI	CAGNNNCTG	1 cut(s)	383
RsaI	GTAC	5 cut(s)	872, 1163, 1388, 1511, 1556
RsaNI	GTAC	5 cut(s)	871, 1162, 1387, 1510, 1555
RseI	CAYNNNNRTG	1 cut(s)	1491
SacI	GAGCTC	2 cut(s)	142, 729
SacII	CCGCGG	2 cut(s)	127, 363
SalI	GTCGAC	2 cut(s)	196, 590
SaqAI	TTAA	1 cut(s)	1632
Sau3AI	GATC	2 cut(s)	394, 1639
ScaI	AGTACT	1 cut(s)	1388
SchI	GAGTC	6 cut(s)	236, 400, 853, 1063, 1232, 1715
ScrFI	CCNGG	2 cut(s)	281, 557
SduI	GDGCHC	2 cut(s)	142, 729
SfaNI	GCATC	5 cut(s)	576, 738, 798, 1284, 1392
SfcI	CTRYAG	2 cut(s)	479, 743
SfoI	GGCGCC	1 cut(s)	240
Sfr303I	CCGCGG	2 cut(s)	127, 363
SgrBI	CCGCGG	2 cut(s)	127, 363
SmiMI	CAYNNNNRTG	1 cut(s)	1491
SmlI	CTYRAG	1 cut(s)	1390
SmoI	CTYRAG	1 cut(s)	1390
SseBI	AGGCCT	1 cut(s)	695
SspDI	GGCGCC	1 cut(s)	238
SspMI	CTAG	5 cut(s)	80, 201, 788, 1316, 1718
SstI	GAGCTC	2 cut(s)	142, 729
StuI	AGGCCT	1 cut(s)	695
StyD4I	CCNGG	2 cut(s)	279, 555
StyI	CCWWGG	1 cut(s)	1425
TaaI	ACNGT	6 cut(s)	491, 901, 970, 1151, 1184, 1357
TaiI	ACGT	6 cut(s)	159, 447, 663, 876, 987, 1709
TatI	WGTACW	1 cut(s)	1386
TauI	GCSGC	7 cut(s)	123, 126, 129, 423, 926, 1125, 1698
Tru1I	TTAA	1 cut(s)	1632
Tru9I	TTAA	1 cut(s)	1632
TscAI	CASTG	5 cut(s)	38, 277, 1063, 1530, 1642
TseFI	GTSAC	1 cut(s)	1351
TseI	GCWGC	7 cut(s)	40, 628, 637, 932, 953, 1604, 1661
Tsp45I	GTSAC	1 cut(s)	1351
TspDTI	ATGAA	2 cut(s)	701, 703
TspGWI	ACGGA	4 cut(s)	90, 507, 553, 589
TspRI	CASTG	5 cut(s)	38, 277, 1063, 1530, 1642
XapI	RAATTY	2 cut(s)	302, 1267
XbaI	TCTAGA	2 cut(s)	1315, 1717
XmiI	GTMKAC	3 cut(s)	197, 591, 742
XspI	CTAG	5 cut(s)	80, 201, 788, 1316, 1718
ZraI	GACGTC	1 cut(s)	661
ZrmI	AGTACT	1 cut(s)	1388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.