Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000879

Physical Location & Seq

Genomic Coordinates Reverse (-)

3915293 .. 3916761

Gene Structure 1469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G004730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCGGTGGAAGATTTGTGCCCGCCGTCTTCTGAAATTTGCACAGTACCGAATTCTGAGAGTCCTGAACCAGATGTGGAGCTGGGTTGTTCACGGAAAAAGAAGAAAAATAAGAAGAAAAGGTGTAAACTTGAAAGCAATGATAAGAGTTGTGAAAGTCCCTCCCTACAGTCTCAATTTGTACAACTCTCAGATCAAGAAGCACCACAACCACTTACAGAGAAAAGTAATAGAATAACAGATTCAGAAAATCCCCAATCAAATGTGGAGCCGAGTCTTTCAACAAAAAAGAAGAAGAAGAAGAAAGGGTCTAGAACCACTGAGACCAATGATACAAGTTGTGAAAGTCCCTCCCAACAGCCTCAACTTGTACAGCTTTCAGATCAACAAGCACCGCAACCACTTGCTGAGAAAATTACTACAATAACAGATTCAGAGAGTCGCCAGTCAAATGTGGAGCTGAGTCTTTCACAAAATAAGAAGAAGAAGAAGAATAAGAGGAAGAACAAGAAAGGGTGTAAACCCCTGAGACAAATGATAAAAGTTGTGAAAGTCCCTCTATACAGCCTCAACTTGTACAAGCAACAGATCAAGAGTGAAAACAAGAAAAGGAATGGGAAGAAAAGCCGTAAACCCCATGACTGTAATGATGAAGTGTGCGGCGTTTCTGTTATGGAAAGTAATATGCCAGCAGTAGATCCATATATAAAGCCTTCTGTTGAAATATCATTGGAGCAGCTTGTTGCGGAGCCACTTGTGGAGGGAATGAGTACAACAGCAAACTCAAAAAGTCCCAAACCCAATGCAGATTTTGGCTGCTCACAAGAAATGAAGAAAAAGAAGCGGAAGAGAAGCCACAAAACCAGGGCAATGCAGATTTTACCTGCTCACAAGAAACAAAAAAGAAAAAGCGAAAGAGAGGGAGCAAAACCAGTGACAGTAAAGAGCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

317

Amino Acids

35.62

Weight (kDa)

9.7

Isoelectric Point (pI)

72.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29760 AT3G29760 AT3G29760 AT3G29760 AT3G29760
fragaria_vesca	FvH4_5g13671 FvH4_5g13671 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700
malus_domestica	MD06G1203100.v1.1 MD09G1068500.v1.1 MD14G1213700.v1.1 MD17G1061400.v1.1
prunus_persica	Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.5G206600_v2.0.a1
pyrus_communis	pycom06g18090 pycom12433g00100 pycom14g17710 pycom17g06130
rosa_chinensis	RchiOBHm_Chr1g0330571 RchiOBHm_Chr1g0330791 RchiOBHm_Chr1g0330841 RchiOBHm_Chr2g0165581 RchiOBHm_Chr7g0183261 RchiOBHm_Chr7g0183271
rosa_laevigata	RLG00000005061 RLG00000021541
rosa_multiflora	Rmu_sc0000815.1_g000003 Rmu_sc0005425.1_g000020 Rmu_sc0008744.1_g000011 Rmu_sc0014529.1_g000002 Rmu_sc0018426.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085710 Rroxscaffold_3G00270610
rosa_rugosa	Rorug02G0516200 Rorug05G0496600 Rorug05G0496600 Rorug05G0496600 Rorug06G0455700
rosa_samantha	Rh1AG107500 Rh1AG107600 Rh1AG111800 Rh1CG103400 Rh1CG106100 Rh1CG107100 Rh1DG113000 Rh2AG582300 Rh2BG594500 Rh2CG564400 Rh2DG604400 Rh7AG057700 Rh7BG057500 Rh7CG059100 Rh7DG057300
rosa_wichuraiana	Rw0G004370 Rw0G016070 Rw1G009080 Rw2G048580 Rw7G004720 Rw7G004730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	892
AciI	CCGC	6 cut(s)	5, 23, 395, 660, 746, 844
AclWI	GGATC	1 cut(s)	692
AcsI	RAATTY	2 cut(s)	36, 52
AfaI	GTAC	5 cut(s)	48, 183, 372, 578, 772
AgsI	TTSAA	3 cut(s)	134, 282, 722
AjnI	CCWGG	1 cut(s)	863
AluBI	AGCT	5 cut(s)	82, 376, 460, 739, 948
AluI	AGCT	5 cut(s)	82, 376, 460, 739, 948
Alw26I	GTCTC	3 cut(s)	177, 317, 523
AlwI	GGATC	1 cut(s)	692
ApeKI	GCWGC	2 cut(s)	736, 816
ApoI	RAATTY	2 cut(s)	36, 52
BaeGI	GKGCMC	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	748, 803
BceAI	ACGGC	2 cut(s)	10, 612
BciT130I	CCWGG	1 cut(s)	865
BcoDI	GTCTC	3 cut(s)	177, 317, 523
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	167
BfuAI	ACCTGC	1 cut(s)	892
BisI	GCNGC	3 cut(s)	661, 737, 817
BlsI	GCNGC	3 cut(s)	662, 738, 818
Bme1390I	CCNGG	1 cut(s)	865
BmiI	GGNNCC	2 cut(s)	270, 750
BmrFI	CCNGG	1 cut(s)	865
BpiI	GAAGAC	1 cut(s)	21
BsaI	GGTCTC	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	864
Bse1I	ACTGG	2 cut(s)	445, 932
Bse3DI	GCAATG	2 cut(s)	145, 876
BseBI	CCWGG	1 cut(s)	865
BseDI	CCNNGG	1 cut(s)	864
BseMI	GCAATG	2 cut(s)	145, 876
BseMII	CTCAG	6 cut(s)	48, 204, 312, 399, 452, 518
BseNI	ACTGG	2 cut(s)	445, 932
BseSI	GKGCMC	1 cut(s)	23
BseXI	GCAGC	2 cut(s)	748, 803
BseYI	CCCAGC	1 cut(s)	82
BslFI	GGGAC	4 cut(s)	144, 333, 539, 777
BsmAI	GTCTC	3 cut(s)	177, 317, 523
BsmFI	GGGAC	4 cut(s)	144, 333, 539, 777
Bso31I	GGTCTC	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp1407I	TGTACA	3 cut(s)	181, 370, 576
Bsp143I	GATC	4 cut(s)	193, 382, 588, 697
BspACI	CCGC	6 cut(s)	5, 23, 395, 660, 746, 844
BspCNI	CTCAG	6 cut(s)	49, 203, 313, 400, 453, 519
BspLI	GGNNCC	2 cut(s)	270, 750
BspMI	ACCTGC	1 cut(s)	892
BspPI	GGATC	1 cut(s)	692
BspTNI	GGTCTC	1 cut(s)	317
BsrDI	GCAATG	2 cut(s)	145, 876
BsrGI	TGTACA	3 cut(s)	181, 370, 576
BsrI	ACTGG	2 cut(s)	445, 932
BssECI	CCNNGG	1 cut(s)	864
BssMI	GATC	4 cut(s)	193, 382, 588, 697
Bst2UI	CCWGG	1 cut(s)	865
Bst4CI	ACNGT	4 cut(s)	46, 171, 644, 940
Bst6I	CTCTTC	1 cut(s)	842
BstAUI	TGTACA	3 cut(s)	181, 370, 576
BstC8I	GCNNGC	2 cut(s)	23, 690
BstDEI	CTNAG	6 cut(s)	57, 190, 321, 408, 461, 527
BstKTI	GATC	4 cut(s)	196, 385, 591, 700
BstMAI	GTCTC	3 cut(s)	177, 317, 523
BstMBI	GATC	4 cut(s)	193, 382, 588, 697
BstNI	CCWGG	1 cut(s)	865
BstSCI	CCNGG	1 cut(s)	863
BstSFI	CTRYAG	1 cut(s)	167
BstSLI	GKGCMC	1 cut(s)	23
BstV1I	GCAGC	2 cut(s)	748, 803
BstV2I	GAAGAC	1 cut(s)	21
BstX2I	RGATCY	1 cut(s)	697
BstYI	RGATCY	1 cut(s)	697
BtsIMutI	CAGTG	2 cut(s)	318, 939
BveI	ACCTGC	1 cut(s)	892
Cac8I	GCNNGC	2 cut(s)	23, 690
Csp6I	GTAC	5 cut(s)	47, 182, 371, 577, 771
CviAII	CATG	1 cut(s)	638
CviQI	GTAC	5 cut(s)	47, 182, 371, 577, 771
DdeI	CTNAG	6 cut(s)	57, 190, 321, 408, 461, 527
DpnI	GATC	4 cut(s)	195, 384, 590, 699
DpnII	GATC	4 cut(s)	193, 382, 588, 697
Eam1104I	CTCTTC	1 cut(s)	842
EarI	CTCTTC	1 cut(s)	842
Eco31I	GGTCTC	1 cut(s)	317
EcoRI	GAATTC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	863
FaeI	CATG	1 cut(s)	641
FaiI	YATR	7 cut(s)	562, 639, 674, 686, 703, 705, 707
FaqI	GGGAC	4 cut(s)	144, 333, 539, 777
FatI	CATG	1 cut(s)	637
FauI	CCCGC	1 cut(s)	30
Fnu4HI	GCNGC	3 cut(s)	661, 737, 817
Fsp4HI	GCNGC	3 cut(s)	661, 737, 817
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	3 cut(s)	661, 737, 817
GsaI	CCCAGC	1 cut(s)	86
Hin1II	CATG	1 cut(s)	641
HinfI	GANTC	6 cut(s)	61, 242, 274, 431, 439, 463
Hpy166II	GTNNAC	4 cut(s)	92, 128, 521, 632
Hpy188I	TCNGA	6 cut(s)	34, 58, 193, 247, 382, 436
Hpy188III	TCNNGA	4 cut(s)	65, 197, 312, 592
Hpy8I	GTNNAC	4 cut(s)	92, 128, 521, 632
HpyAV	CCTTC	1 cut(s)	723
HpyCH4III	ACNGT	4 cut(s)	46, 171, 644, 940
HpyCH4V	TGCA	3 cut(s)	42, 806, 874
HpyF3I	CTNAG	6 cut(s)	57, 190, 321, 408, 461, 527
Hsp92II	CATG	1 cut(s)	641
Kzo9I	GATC	4 cut(s)	193, 382, 588, 697
LmnI	GCTCC	6 cut(s)	79, 268, 457, 733, 748, 923
Lsp1109I	GCAGC	2 cut(s)	748, 803
MaeI	CTAG	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	934
MalI	GATC	4 cut(s)	195, 384, 590, 699
MboI	GATC	4 cut(s)	193, 382, 588, 697
MflI	RGATCY	1 cut(s)	697
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	4 cut(s)	36, 52, 176, 414
MlyI	GAGTC	4 cut(s)	70, 283, 448, 472
MnlI	CCTC	8 cut(s)	172, 361, 372, 492, 567, 578, 754, 913
MspR9I	CCNGG	1 cut(s)	865
MvaI	CCWGG	1 cut(s)	865
NdeII	GATC	4 cut(s)	193, 382, 588, 697
NlaIII	CATG	1 cut(s)	641
NlaIV	GGNNCC	2 cut(s)	270, 750
NmeAIII	GCCGAG	1 cut(s)	297
NmuCI	GTSAC	1 cut(s)	934
PfeI	GAWTC	2 cut(s)	242, 431
PkrI	GCNGC	3 cut(s)	662, 738, 818
PleI	GAGTC	4 cut(s)	69, 282, 447, 471
PpsI	GAGTC	4 cut(s)	69, 282, 447, 471
Psp6I	CCWGG	1 cut(s)	863
PspFI	CCCAGC	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	863
PspN4I	GGNNCC	2 cut(s)	270, 750
PsuI	RGATCY	1 cut(s)	697
RsaI	GTAC	5 cut(s)	48, 183, 372, 578, 772
RsaNI	GTAC	5 cut(s)	47, 182, 371, 577, 771
SatI	GCNGC	3 cut(s)	661, 737, 817
Sau3AI	GATC	4 cut(s)	193, 382, 588, 697
SchI	GAGTC	4 cut(s)	70, 283, 448, 472
ScrFI	CCNGG	1 cut(s)	865
SduI	GDGCHC	1 cut(s)	23
SetI	ASST	7 cut(s)	84, 125, 378, 462, 741, 886, 950
SfcI	CTRYAG	1 cut(s)	167
Sse9I	AATT	4 cut(s)	36, 52, 176, 414
SsiI	CCGC	6 cut(s)	5, 23, 395, 660, 746, 844
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	863
TaaI	ACNGT	4 cut(s)	46, 171, 644, 940
TasI	AATT	4 cut(s)	36, 52, 176, 414
TatI	WGTACW	4 cut(s)	181, 370, 576, 770
TauI	GCSGC	1 cut(s)	663
TfiI	GAWTC	2 cut(s)	242, 431
TscAI	CASTG	2 cut(s)	325, 939
TseFI	GTSAC	1 cut(s)	934
TseI	GCWGC	2 cut(s)	736, 816
Tsp45I	GTSAC	1 cut(s)	934
TspDTI	ATGAA	2 cut(s)	666, 845
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	2 cut(s)	325, 939
XapI	RAATTY	2 cut(s)	36, 52
XbaI	TCTAGA	1 cut(s)	311
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.