Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000879

Physical Location & Seq

Genomic Coordinates Reverse (-)

18619608 .. 18619901

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG107600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGAGCACAAGAATAAACTCGGAAAGTAGTCCCAAGCCCAATGTAGATATTAGCTGCTCACAAGAGACGAGGAAAAAAAATCCAAAGAGAAAGCGCAATTCTTGTGAAAATATAGAGCTATTAGTGGAAATAATGACGCCAGAAGCAGATCCATCTCTTCAGCCTCTTCTTGCAATATTCTCTGAACTAGAGGTAGAGGTGACACATCCACTTGATACTAGTACAGAGTGGAAAGATACCAAGTTTGATGAAGTTCCTTCCTCGTCACATTTGGCTCCAAAAGCTGATAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

97

Amino Acids

10.91

Weight (kDa)

4.98

Isoelectric Point (pI)

68.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29760 AT3G29760 AT3G29760 AT3G29760 AT3G29760
fragaria_vesca	FvH4_5g13671 FvH4_5g13671 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700
malus_domestica	MD06G1203100.v1.1 MD09G1068500.v1.1 MD14G1213700.v1.1 MD17G1061400.v1.1
prunus_persica	Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.5G206600_v2.0.a1
pyrus_communis	pycom06g18090 pycom12433g00100 pycom14g17710 pycom17g06130
rosa_chinensis	RchiOBHm_Chr1g0330571 RchiOBHm_Chr1g0330791 RchiOBHm_Chr1g0330841 RchiOBHm_Chr2g0165581 RchiOBHm_Chr7g0183261 RchiOBHm_Chr7g0183271
rosa_laevigata	RLG00000005061 RLG00000021541
rosa_multiflora	Rmu_sc0000815.1_g000003 Rmu_sc0005425.1_g000020 Rmu_sc0008744.1_g000011 Rmu_sc0014529.1_g000002 Rmu_sc0018426.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085710 Rroxscaffold_3G00270610
rosa_rugosa	Rorug02G0516200 Rorug05G0496600 Rorug05G0496600 Rorug05G0496600 Rorug06G0455700
rosa_samantha	Rh1AG107500 Rh1AG107600 Rh1AG111800 Rh1CG103400 Rh1CG106100 Rh1CG107100 Rh1DG113000 Rh2AG582300 Rh2BG594500 Rh2CG564400 Rh2DG604400 Rh7AG057700 Rh7BG057500 Rh7CG059100 Rh7DG057300
rosa_wichuraiana	Rw0G004370 Rw0G016070 Rw1G009080 Rw2G048580 Rw7G004720 Rw7G004730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	143
AcyI	GRCGYC	1 cut(s)	137
AfaI	GTAC	1 cut(s)	223
AhlI	ACTAGT	1 cut(s)	218
AluBI	AGCT	3 cut(s)	54, 118, 284
AluI	AGCT	3 cut(s)	54, 118, 284
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	143
ApeKI	GCWGC	1 cut(s)	54
AspLEI	GCGC	1 cut(s)	96
AsuHPI	GGTGA	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	59
BcuI	ACTAGT	1 cut(s)	218
BfaI	CTAG	2 cut(s)	188, 219
BisI	GCNGC	1 cut(s)	55
BlsI	GCNGC	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	276
BsaHI	GRCGYC	1 cut(s)	137
BseGI	GGATG	1 cut(s)	205
BseXI	GCAGC	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	59
BsmBI	CGTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	276
BspPI	GGATC	1 cut(s)	143
BssMI	GATC	1 cut(s)	148
BssNI	GRCGYC	1 cut(s)	137
Bst6I	CTCTTC	2 cut(s)	162, 171
BstACI	GRCGYC	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	1 cut(s)	151
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstV1I	GCAGC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	205
CfoI	GCGC	1 cut(s)	96
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	222
CviJI	RGCY	6 cut(s)	37, 54, 118, 163, 275, 284
CviKI_1	RGCY	6 cut(s)	37, 54, 118, 163, 275, 284
CviQI	GTAC	1 cut(s)	222
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
Eam1104I	CTCTTC	2 cut(s)	162, 171
EarI	CTCTTC	2 cut(s)	162, 171
Eco57I	CTGAAG	1 cut(s)	143
Esp3I	CGTCTC	1 cut(s)	59
FaiI	YATR	1 cut(s)	113
FaqI	GGGAC	1 cut(s)	15
Fnu4HI	GCNGC	1 cut(s)	55
FokI	GGATG	1 cut(s)	192
Fsp4HI	GCNGC	1 cut(s)	55
FspBI	CTAG	2 cut(s)	188, 219
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	1 cut(s)	55
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	96
Hin1I	GRCGYC	1 cut(s)	137
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HphI	GGTGA	1 cut(s)	211
Hpy188I	TCNGA	2 cut(s)	22, 184
HpyAV	CCTTC	1 cut(s)	267
HpyCH4V	TGCA	1 cut(s)	173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
Hsp92I	GRCGYC	1 cut(s)	137
HspAI	GCGC	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	280
LpnPI	CCDG	1 cut(s)	153
Lsp1109I	GCAGC	1 cut(s)	41
MaeI	CTAG	2 cut(s)	188, 219
MaeIII	GTNAC	2 cut(s)	199, 264
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	2 cut(s)	149, 158
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	97
MnlI	CCTC	5 cut(s)	63, 174, 184, 190, 271
MwoI	GCNNNNNNNGC	1 cut(s)	281
NdeII	GATC	1 cut(s)	148
NlaIV	GGNNCC	1 cut(s)	276
NmuCI	GTSAC	2 cut(s)	199, 264
PkrI	GCNGC	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	276
PsuI	RGATCY	1 cut(s)	148
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
SatI	GCNGC	1 cut(s)	55
Sau3AI	GATC	1 cut(s)	148
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	5 cut(s)	56, 120, 195, 201, 286
SpeI	ACTAGT	1 cut(s)	218
Sse9I	AATT	1 cut(s)	97
SspI	AATATT	1 cut(s)	177
SspMI	CTAG	2 cut(s)	188, 219
TasI	AATT	1 cut(s)	97
TatI	WGTACW	1 cut(s)	221
TseFI	GTSAC	2 cut(s)	199, 264
TseI	GCWGC	1 cut(s)	54
Tsp45I	GTSAC	2 cut(s)	199, 264
TspDTI	ATGAA	1 cut(s)	264
XspI	CTAG	2 cut(s)	188, 219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.