Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000879

Physical Location & Seq

Genomic Coordinates Reverse (-)

20785278 .. 20785787

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG113000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAGCACAAGAATAAACTCGGAAAGTAGTCCCAAGCCCAATGTAGGTATTAGCTGCTCACAAGAGATGAGGAAAAAAAATCCAAAGAGAAAGCGCAATTCTTGTGAAAATACAGAGCTATTAGTGGAAATAATGACGCCAGAAGCAGATCCATCTCTTCAGCCTCTTCTTGCAATATTCTCTGAACAAGAGGTAGAGGTGACACATCCACTTGATACTAGTACAGAGTGGAAAGATACCAAGTTTGATGAAGTTCCTTCCTCGTCACATTTGGCTCCAAAAGCTGATACTGAAGTAGTTGCTATCAGTAGAGAGGGCAGTCTTTTGCAGATGGCACAATCTTCACCTGAAAAATCTCTTCTTAAGTGTTCTCAGAAAAAGCTTCTCATTCTTGATATTAATGGGCTGCTTGCTGATATTGTTCAGATGGAAGATTCTAACTGCAGTAGTTTTAAACCAGACAAAGTTATATCATGGAAAGTAGGTGATAGTGTATTTAAATATCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

169

Amino Acids

18.83

Weight (kDa)

5.31

Isoelectric Point (pI)

51.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29760 AT3G29760 AT3G29760 AT3G29760 AT3G29760
fragaria_vesca	FvH4_5g13671 FvH4_5g13671 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700
malus_domestica	MD06G1203100.v1.1 MD09G1068500.v1.1 MD14G1213700.v1.1 MD17G1061400.v1.1
prunus_persica	Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.5G206600_v2.0.a1
pyrus_communis	pycom06g18090 pycom12433g00100 pycom14g17710 pycom17g06130
rosa_chinensis	RchiOBHm_Chr1g0330571 RchiOBHm_Chr1g0330791 RchiOBHm_Chr1g0330841 RchiOBHm_Chr2g0165581 RchiOBHm_Chr7g0183261 RchiOBHm_Chr7g0183271
rosa_laevigata	RLG00000005061 RLG00000021541
rosa_multiflora	Rmu_sc0000815.1_g000003 Rmu_sc0005425.1_g000020 Rmu_sc0008744.1_g000011 Rmu_sc0014529.1_g000002 Rmu_sc0018426.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085710 Rroxscaffold_3G00270610
rosa_rugosa	Rorug02G0516200 Rorug05G0496600 Rorug05G0496600 Rorug05G0496600 Rorug06G0455700
rosa_samantha	Rh1AG107500 Rh1AG107600 Rh1AG111800 Rh1CG103400 Rh1CG106100 Rh1CG107100 Rh1DG113000 Rh2AG582300 Rh2BG594500 Rh2CG564400 Rh2DG604400 Rh7AG057700 Rh7BG057500 Rh7CG059100 Rh7DG057300
rosa_wichuraiana	Rw0G004370 Rw0G016070 Rw1G009080 Rw2G048580 Rw7G004720 Rw7G004730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	143
AcuI	CTGAAG	2 cut(s)	143, 312
AcyI	GRCGYC	1 cut(s)	137
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	1 cut(s)	44
AflII	CTTAAG	1 cut(s)	362
AhlI	ACTAGT	1 cut(s)	218
AluBI	AGCT	4 cut(s)	54, 118, 284, 382
AluI	AGCT	4 cut(s)	54, 118, 284, 382
Alw21I	GWGCWC	1 cut(s)	8
AlwI	GGATC	1 cut(s)	143
ApeKI	GCWGC	2 cut(s)	54, 406
AseI	ATTAAT	1 cut(s)	399
AspLEI	GCGC	1 cut(s)	96
AsuHPI	GGTGA	3 cut(s)	211, 336, 497
BaeI	ACNNNNGTAYC	2 cut(s)	279, 312
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	41, 393
BccI	CCATC	3 cut(s)	160, 325, 421
BcuI	ACTAGT	1 cut(s)	218
BfaI	CTAG	1 cut(s)	219
BfmI	CTRYAG	2 cut(s)	442, 506
BfrI	CTTAAG	1 cut(s)	362
BisI	GCNGC	2 cut(s)	55, 407
BlsI	GCNGC	2 cut(s)	56, 408
BmiI	GGNNCC	1 cut(s)	276
BsaHI	GRCGYC	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	386
BseXI	GCAGC	2 cut(s)	41, 393
BsiHKAI	GWGCWC	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	15
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	148
BspCNI	CTCAG	1 cut(s)	385
BspLI	GGNNCC	1 cut(s)	276
BspMAI	CTGCAG	1 cut(s)	446
BspPI	GGATC	1 cut(s)	143
BspTI	CTTAAG	1 cut(s)	362
BssMI	GATC	1 cut(s)	148
BssNI	GRCGYC	1 cut(s)	137
Bst6I	CTCTTC	3 cut(s)	162, 171, 363
BstACI	GRCGYC	1 cut(s)	137
BstAFI	CTTAAG	1 cut(s)	362
BstC8I	GCNNGC	1 cut(s)	411
BstDEI	CTNAG	1 cut(s)	372
BstF5I	GGATG	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstSFI	CTRYAG	2 cut(s)	442, 506
BstV1I	GCAGC	2 cut(s)	41, 393
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	411
CfoI	GCGC	1 cut(s)	96
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	1 cut(s)	474
CviJI	RGCY	8 cut(s)	37, 54, 118, 163, 275, 284, 382, 406
CviKI_1	RGCY	8 cut(s)	37, 54, 118, 163, 275, 284, 382, 406
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
DraI	TTTAAA	2 cut(s)	454, 499
Eam1104I	CTCTTC	3 cut(s)	162, 171, 363
EarI	CTCTTC	3 cut(s)	162, 171, 363
Eco57I	CTGAAG	2 cut(s)	143, 312
FaeI	CATG	1 cut(s)	477
FaiI	YATR	3 cut(s)	470, 475, 508
FaqI	GGGAC	1 cut(s)	15
FatI	CATG	1 cut(s)	473
Fnu4HI	GCNGC	2 cut(s)	55, 407
FokI	GGATG	1 cut(s)	192
Fsp4HI	GCNGC	2 cut(s)	55, 407
FspBI	CTAG	1 cut(s)	219
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	2 cut(s)	55, 407
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	96
Hin1I	GRCGYC	1 cut(s)	137
Hin1II	CATG	1 cut(s)	477
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	1 cut(s)	434
HphI	GGTGA	3 cut(s)	211, 336, 497
Hpy188I	TCNGA	4 cut(s)	22, 184, 375, 426
Hpy188III	TCNNGA	1 cut(s)	392
HpyAV	CCTTC	1 cut(s)	267
HpyCH4V	TGCA	3 cut(s)	173, 328, 444
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	372
Hsp92I	GRCGYC	1 cut(s)	137
Hsp92II	CATG	1 cut(s)	477
HspAI	GCGC	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	280
LpnPI	CCDG	3 cut(s)	153, 360, 471
Lsp1109I	GCAGC	2 cut(s)	41, 393
MaeI	CTAG	1 cut(s)	219
MaeIII	GTNAC	2 cut(s)	199, 264
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	5 cut(s)	149, 158, 333, 350, 443
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	97
MnlI	CCTC	6 cut(s)	63, 174, 184, 190, 271, 307
MseI	TTAA	4 cut(s)	363, 399, 453, 498
MspCI	CTTAAG	1 cut(s)	362
MwoI	GCNNNNNNNGC	1 cut(s)	281
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	1 cut(s)	477
NlaIV	GGNNCC	1 cut(s)	276
NmuCI	GTSAC	2 cut(s)	199, 264
PfeI	GAWTC	1 cut(s)	434
PkrI	GCNGC	2 cut(s)	56, 408
PshBI	ATTAAT	1 cut(s)	399
PspN4I	GGNNCC	1 cut(s)	276
PstI	CTGCAG	1 cut(s)	446
PsuI	RGATCY	1 cut(s)	148
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
SaqAI	TTAA	4 cut(s)	363, 399, 453, 498
SatI	GCNGC	2 cut(s)	55, 407
Sau3AI	GATC	1 cut(s)	148
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	9 cut(s)	49, 56, 120, 195, 201, 286, 349, 384, 487
SfcI	CTRYAG	2 cut(s)	442, 506
SmiI	ATTTAAAT	1 cut(s)	499
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
SpeI	ACTAGT	1 cut(s)	218
Sse9I	AATT	1 cut(s)	97
SspI	AATATT	1 cut(s)	177
SspMI	CTAG	1 cut(s)	219
SwaI	ATTTAAAT	1 cut(s)	499
TasI	AATT	1 cut(s)	97
TatI	WGTACW	1 cut(s)	221
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	4 cut(s)	363, 399, 453, 498
Tru9I	TTAA	4 cut(s)	363, 399, 453, 498
TseFI	GTSAC	2 cut(s)	199, 264
TseI	GCWGC	2 cut(s)	54, 406
Tsp45I	GTSAC	2 cut(s)	199, 264
TspDTI	ATGAA	1 cut(s)	264
Vha464I	CTTAAG	1 cut(s)	362
VspI	ATTAAT	1 cut(s)	399
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.