Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0000879

Physical Location & Seq

Genomic Coordinates Reverse (-)

4329794 .. 4331091

Gene Structure 1298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g06130.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGCCCAAGGGTGAAGTCCAATTTATTCTCTTAGTGAATGCAGGACCTCGGCCTTCCATTGTTAAAATTATTGAGACAGGTATGGAAACAAAAAAAAATCATGTGCAGTCGAATCAAGTGAAAACAAGAAGGAGACATGGGAAGAAGAAGCCAAATTTACTGCAACATACAGGTCCAACTGAGAACCTGCCTCAGGAATATGGTCAGAGTGATGCTAATCATATGCATGGATTGTCAACCTTAAGTCTATCTGATGAAAGAAGTGATGACGTCGTAGTTATTTCATCAGGAGGTGTTAGAACCATGAATGAAGAGGACAACAGATCTGGGATTTCAAATCTCTCAATTGTAAGAACACCTGTTTGCGATACAGAGAAAAAGCTTCTTATTCTTGATATAAATGGACTACTTGCAGATATAGTCTCTCCTCCTCCAAAGGGACTTCCATCTGACATAAGAATTCAAGGGCGAGCAATTTTCAAGAGGCCCTTCTATCTTGATTTTCTTAAGTTCTGCTTTGAGCATTTCGAAGTGGGTGTGTGGTCTTCAAGATCCAAGAGAATTGTGGAAAAAGTGATTGATTATCTGATGGGTGATATGAAGCACAAGTTGCTGTTTTGTTGGGATCATCCTACTGTATACTGCAACAGGGTTCAGGACTCTAGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

224

Amino Acids

25.33

Weight (kDa)

9.26

Isoelectric Point (pI)

50.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29760 AT3G29760 AT3G29760 AT3G29760 AT3G29760
fragaria_vesca	FvH4_5g13671 FvH4_5g13671 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700
malus_domestica	MD06G1203100.v1.1 MD09G1068500.v1.1 MD14G1213700.v1.1 MD17G1061400.v1.1
prunus_persica	Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.5G206600_v2.0.a1
pyrus_communis	pycom06g18090 pycom12433g00100 pycom14g17710 pycom17g06130
rosa_chinensis	RchiOBHm_Chr1g0330571 RchiOBHm_Chr1g0330791 RchiOBHm_Chr1g0330841 RchiOBHm_Chr2g0165581 RchiOBHm_Chr7g0183261 RchiOBHm_Chr7g0183271
rosa_laevigata	RLG00000005061 RLG00000021541
rosa_multiflora	Rmu_sc0000815.1_g000003 Rmu_sc0005425.1_g000020 Rmu_sc0008744.1_g000011 Rmu_sc0014529.1_g000002 Rmu_sc0018426.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085710 Rroxscaffold_3G00270610
rosa_rugosa	Rorug02G0516200 Rorug05G0496600 Rorug05G0496600 Rorug05G0496600 Rorug06G0455700
rosa_samantha	Rh1AG107500 Rh1AG107600 Rh1AG111800 Rh1CG103400 Rh1CG106100 Rh1CG107100 Rh1DG113000 Rh2AG582300 Rh2BG594500 Rh2CG564400 Rh2DG604400 Rh7AG057700 Rh7BG057500 Rh7CG059100 Rh7DG057300
rosa_wichuraiana	Rw0G004370 Rw0G016070 Rw1G009080 Rw2G048580 Rw7G004720 Rw7G004730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	273
Acc36I	ACCTGC	1 cut(s)	195
AccI	GTMKAC	1 cut(s)	639
AclWI	GGATC	2 cut(s)	546, 633
AcsI	RAATTY	2 cut(s)	154, 459
AcyI	GRCGYC	1 cut(s)	270
AfiI	CCNNNNNNNGG	2 cut(s)	193, 437
AflII	CTTAAG	2 cut(s)	241, 506
AgsI	TTSAA	4 cut(s)	336, 464, 481, 549
AluBI	AGCT	1 cut(s)	382
AluI	AGCT	1 cut(s)	382
Alw26I	GTCTC	3 cut(s)	68, 127, 427
AlwI	GGATC	2 cut(s)	546, 633
AoxI	GGCC	2 cut(s)	50, 485
ApoI	RAATTY	2 cut(s)	154, 459
AspS9I	GGNCC	3 cut(s)	44, 173, 486
AsuHPI	GGTGA	2 cut(s)	23, 605
AsuII	TTCGAA	1 cut(s)	528
AvaII	GGWCC	2 cut(s)	44, 173
AxyI	CCTNAGG	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	537
BccI	CCATC	2 cut(s)	454, 583
BcoDI	GTCTC	3 cut(s)	68, 127, 427
BfaI	CTAG	1 cut(s)	663
BfrI	CTTAAG	2 cut(s)	241, 506
BfuAI	ACCTGC	1 cut(s)	195
BglII	AGATCT	1 cut(s)	323
Bme18I	GGWCC	2 cut(s)	44, 173
BmgT120I	GGNCC	3 cut(s)	44, 173, 486
BmsI	GCATC	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	537
Bpu14I	TTCGAA	1 cut(s)	528
BsaBI	GATNNNNATC	1 cut(s)	216
BsaHI	GRCGYC	1 cut(s)	270
BsaJI	CCNNGG	2 cut(s)	6, 47
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 437
Bse21I	CCTNAGG	1 cut(s)	192
Bse8I	GATNNNNATC	1 cut(s)	216
BseDI	CCNNGG	2 cut(s)	6, 47
BseGI	GGATG	1 cut(s)	628
BseJI	GATNNNNATC	1 cut(s)	216
BseLI	CCNNNNNNNGG	2 cut(s)	193, 437
BseMII	CTCAG	2 cut(s)	171, 206
BseRI	GAGGAG	2 cut(s)	417, 420
BsgI	GTGCAG	1 cut(s)	125
BshFI	GGCC	2 cut(s)	52, 487
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	2 cut(s)	193, 437
BsmAI	GTCTC	3 cut(s)	68, 127, 427
BsmFI	GGGAC	1 cut(s)	453
BsmI	GAATGC	1 cut(s)	43
BsnI	GGCC	2 cut(s)	52, 487
Bsp119I	TTCGAA	1 cut(s)	528
Bsp143I	GATC	3 cut(s)	323, 551, 625
BspANI	GGCC	2 cut(s)	52, 487
BspCNI	CTCAG	2 cut(s)	172, 205
BspMI	ACCTGC	1 cut(s)	195
BspPI	GGATC	2 cut(s)	546, 633
BspT104I	TTCGAA	1 cut(s)	528
BspTI	CTTAAG	2 cut(s)	241, 506
BssECI	CCNNGG	2 cut(s)	6, 47
BssMI	GATC	3 cut(s)	323, 551, 625
BssNAI	GTATAC	1 cut(s)	640
BssNI	GRCGYC	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	6
Bst1107I	GTATAC	1 cut(s)	640
Bst4CI	ACNGT	1 cut(s)	637
Bst6I	CTCTTC	1 cut(s)	306
BstACI	GRCGYC	1 cut(s)	270
BstAFI	CTTAAG	2 cut(s)	241, 506
BstAPI	GCANNNNNTGC	1 cut(s)	610
BstBI	TTCGAA	1 cut(s)	528
BstC8I	GCNNGC	1 cut(s)	471
BstDEI	CTNAG	3 cut(s)	31, 180, 192
BstENI	CCTNNNNNAGG	1 cut(s)	191
BstF5I	GGATG	1 cut(s)	628
BstKTI	GATC	3 cut(s)	326, 554, 628
BstMAI	GTCTC	3 cut(s)	68, 127, 427
BstMBI	GATC	3 cut(s)	323, 551, 625
BstMWI	GCNNNNNNNGC	1 cut(s)	610
BstV2I	GAAGAC	1 cut(s)	537
BstX2I	RGATCY	2 cut(s)	323, 551
BstYI	RGATCY	2 cut(s)	323, 551
BstZ17I	GTATAC	1 cut(s)	640
Bsu36I	CCTNAGG	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	52, 487
BtsCI	GGATG	1 cut(s)	628
BveI	ACCTGC	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	471
Cfr13I	GGNCC	3 cut(s)	44, 173, 486
CviAII	CATG	4 cut(s)	101, 137, 227, 304
CviJI	RGCY	4 cut(s)	52, 151, 382, 487
CviKI_1	RGCY	4 cut(s)	52, 151, 382, 487
DdeI	CTNAG	3 cut(s)	31, 180, 192
DpnI	GATC	3 cut(s)	325, 553, 627
DpnII	GATC	3 cut(s)	323, 551, 625
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Eco130I	CCWWGG	1 cut(s)	6
Eco47I	GGWCC	2 cut(s)	44, 173
Eco81I	CCTNAGG	1 cut(s)	192
EcoNI	CCTNNNNNAGG	1 cut(s)	191
EcoO109I	RGGNCCY	2 cut(s)	44, 486
EcoRI	GAATTC	1 cut(s)	459
EcoT14I	CCWWGG	1 cut(s)	6
EcoT22I	ATGCAT	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	4 cut(s)	104, 140, 230, 307
FalI	AAGNNNNNCTT	4 cut(s)	473, 505, 500, 532
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	4 cut(s)	100, 136, 226, 303
FauNDI	CATATG	1 cut(s)	222
FblI	GTMKAC	1 cut(s)	639
FokI	GGATG	1 cut(s)	615
FspBI	CTAG	1 cut(s)	663
HaeIII	GGCC	2 cut(s)	52, 487
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	4 cut(s)	104, 140, 230, 307
HincII	GTYRAC	1 cut(s)	237
HindII	GTYRAC	1 cut(s)	237
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	2 cut(s)	112, 659
HphI	GGTGA	2 cut(s)	23, 605
Hpy166II	GTNNAC	2 cut(s)	237, 640
Hpy188I	TCNGA	4 cut(s)	207, 253, 451, 588
Hpy188III	TCNNGA	8 cut(s)	194, 288, 392, 481, 497, 549, 656, 663
Hpy8I	GTNNAC	2 cut(s)	237, 640
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	3 cut(s)	63, 123, 499
HpyCH4III	ACNGT	1 cut(s)	637
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	6 cut(s)	41, 106, 163, 226, 413, 645
HpyF10VI	GCNNNNNNNGC	1 cut(s)	610
HpyF3I	CTNAG	3 cut(s)	31, 180, 192
HpySE526I	ACGT	1 cut(s)	270
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	4 cut(s)	104, 140, 230, 307
Kzo9I	GATC	3 cut(s)	323, 551, 625
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	1 cut(s)	663
MaeII	ACGT	1 cut(s)	270
MalI	GATC	3 cut(s)	325, 553, 627
MboI	GATC	3 cut(s)	323, 551, 625
MboII	GAAGA	4 cut(s)	154, 157, 323, 537
MfeI	CAATTG	1 cut(s)	345
MflI	RGATCY	2 cut(s)	323, 551
MluCI	AATT	7 cut(s)	20, 66, 154, 345, 459, 474, 561
MlyI	GAGTC	1 cut(s)	653
MmeI	TCCRAC	1 cut(s)	200
MnlI	CCTC	7 cut(s)	57, 201, 284, 307, 438, 441, 477
Mph1103I	ATGCAT	1 cut(s)	228
MseI	TTAA	3 cut(s)	63, 242, 507
MslI	CAYNNNNRTG	1 cut(s)	225
MspCI	CTTAAG	2 cut(s)	241, 506
MunI	CAATTG	1 cut(s)	345
Mva1269I	GAATGC	1 cut(s)	43
MwoI	GCNNNNNNNGC	1 cut(s)	610
NdeI	CATATG	1 cut(s)	222
NdeII	GATC	3 cut(s)	323, 551, 625
NlaIII	CATG	4 cut(s)	104, 140, 230, 307
NmeAIII	GCCGAG	1 cut(s)	28
NsiI	ATGCAT	1 cut(s)	228
NspV	TTCGAA	1 cut(s)	528
PctI	GAATGC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	112
PleI	GAGTC	1 cut(s)	653
PpsI	GAGTC	1 cut(s)	653
PpuMI	RGGWCCY	1 cut(s)	44
Psp5II	RGGWCCY	1 cut(s)	44
PspPI	GGNCC	3 cut(s)	44, 173, 486
PspPPI	RGGWCCY	1 cut(s)	44
PsuI	RGATCY	2 cut(s)	323, 551
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	3 cut(s)	63, 242, 507
Sau3AI	GATC	3 cut(s)	323, 551, 625
Sau96I	GGNCC	3 cut(s)	44, 173, 486
SchI	GAGTC	1 cut(s)	653
SetI	ASST	9 cut(s)	49, 82, 175, 189, 242, 273, 295, 361, 384
SfaNI	GCATC	1 cut(s)	202
SfuI	TTCGAA	1 cut(s)	528
SinI	GGWCC	2 cut(s)	44, 173
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	2 cut(s)	241, 506
SmoI	CTYRAG	2 cut(s)	241, 506
Sse9I	AATT	7 cut(s)	20, 66, 154, 345, 459, 474, 561
SspMI	CTAG	1 cut(s)	663
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	637
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	2 cut(s)	110, 528
TasI	AATT	7 cut(s)	20, 66, 154, 345, 459, 474, 561
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	3 cut(s)	63, 242, 507
Tru9I	TTAA	3 cut(s)	63, 242, 507
TspDTI	ATGAA	5 cut(s)	270, 273, 320, 324, 614
Vha464I	CTTAAG	2 cut(s)	241, 506
VpaK11BI	GGWCC	2 cut(s)	44, 173
XagI	CCTNNNNNAGG	1 cut(s)	191
XapI	RAATTY	2 cut(s)	154, 459
XbaI	TCTAGA	1 cut(s)	662
XcmI	CCANNNNNNNNNTGG	1 cut(s)	562
XmiI	GTMKAC	1 cut(s)	639
XspI	CTAG	1 cut(s)	663
ZraI	GACGTC	1 cut(s)	271
Zsp2I	ATGCAT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.