Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00167

Orthogroup ID

OG0000879

Physical Location & Seq

Genomic Coordinates Reverse (-)

17396 .. 19947

Gene Structure 2552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G004370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1500 bp

ATGGAAAGTAATATTCCAGCAGTTGATCCATATATACAGCCTTCTATGGAGCAGCTTGTTGTGCAGCCACTTGTGGAGGGAATGAGTACAACAACAAACTCAAAAAGCCCCAAACCTAATGCAGATTTTGGCTGCTTACAAGAAACAAAGAAAAAGAAGCAGAAGAGAAGCCACAAAACCAATGAGAATAAAGAGCTACCAGTGGAAACAATGATGCCAGAAGCAGATCCATCTTTTCAGCCTTCTTTTACAATGTTCTCTGAACAAGAATTAGAGGTGTCACAACCACTTAATGTTGATGCAGGACCACTTGTGGAGGGAATGAGCAGAACATTAAACCCAGAAAAGCCCAGGCCGAATGCAGATTTTAACTGCTCACAAGAAACAAAGAAGAAAAAGCGAAAGAGAGAAATATTAATGGAACCAATGATGCCAGAAGCAGAATCATCTCTTCAGCCTTCTCTTACAATATTCTCTGAACAAGTACTAGAGGGAATGAGCACAACAATAAACTCAGAAAGTAGTCCCAAGCCCAAGCCCAATGAAAAAAATCCAAAGAGAAAGCGCAATTCTTGTGAAAATATAGAGCTATTAGTGGAAATAATGACACCAGAAGCAGATCCATCTCTTCAGCCTCTTGCAATATTCTCTGAACAAGAGGTAGAGGTGACACATCCACTTGATACTGGTACAGAGTGGAAAGATACCAAGTTTGATGAAGTTCCTTCCTCGTCACATTTGGCTCCAAAAGCTGATACTGAAGTAGTTGCTATCAGTAGAGAGGGCAGTCTTTTGCAGATGGCACACTCTTCACCTGAAAAATCTCTTCTTAAGTGTTCTCAGAAAAAGCTTCTCATTCTTGATATTAATGGGCTGCTTGCTGATATTGTTCAGATGGAAGATTCTAACTGCAGTAGTTTTAAACCAGACAAAGTTATATCATGGAAAGCAGTTTTTAAGAGGCCATTTTGCGATGATTTTATACAGTTCTGCTTTGACAGATTTGATGTGGGTGAAAAATGTGGAGTTGTGGACTTGCTGATAGATTTTCTTTTGGGGGATTCCAAACACAAATTACTCTTTTGCTGGAACCAATCGCACTGCACTTCTACCAGGTTCAAGATGGTGGAGAACAAGAATAAGCCCCTCGTTTTGAAAGAGCTTGGAAAATTATGGGAGAAGCTTGAGCCTGATCTTCCTTGGGCAAGAGGAGAGTACAACGAATCCAACACACTGTTATTGGATGATTCTCCATATAAGGCTTTGCTCAATCCGGTGAACACCGCCATATTCCCCGATTCGTATCAGTTCAGGAACAGAGAAGATTCTTCATTAGGACCTGGAGGCAAGATCCGTTCTTACCTGGAAGGGTTAGCTATGGCTGAGACTGTCCAAAAATATGTGGAACAGAATCCATTTGGTCAGAAACCCATAACAAAATCAAATCCTTCTTGGAACTTCTATAGGAGAGTTATAGGGGATGTAGTATCCCTGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

499

Amino Acids

56.47

Weight (kDa)

5.44

Isoelectric Point (pI)

55.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	283 - 464	3.1e-10	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29760 AT3G29760 AT3G29760 AT3G29760 AT3G29760
fragaria_vesca	FvH4_5g13671 FvH4_5g13671 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700
malus_domestica	MD06G1203100.v1.1 MD09G1068500.v1.1 MD14G1213700.v1.1 MD17G1061400.v1.1
prunus_persica	Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.5G206600_v2.0.a1
pyrus_communis	pycom06g18090 pycom12433g00100 pycom14g17710 pycom17g06130
rosa_chinensis	RchiOBHm_Chr1g0330571 RchiOBHm_Chr1g0330791 RchiOBHm_Chr1g0330841 RchiOBHm_Chr2g0165581 RchiOBHm_Chr7g0183261 RchiOBHm_Chr7g0183271
rosa_laevigata	RLG00000005061 RLG00000021541
rosa_multiflora	Rmu_sc0000815.1_g000003 Rmu_sc0005425.1_g000020 Rmu_sc0008744.1_g000011 Rmu_sc0014529.1_g000002 Rmu_sc0018426.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085710 Rroxscaffold_3G00270610
rosa_rugosa	Rorug02G0516200 Rorug05G0496600 Rorug05G0496600 Rorug05G0496600 Rorug06G0455700
rosa_samantha	Rh1AG107500 Rh1AG107600 Rh1AG111800 Rh1CG103400 Rh1CG106100 Rh1CG107100 Rh1DG113000 Rh2AG582300 Rh2BG594500 Rh2CG564400 Rh2DG604400 Rh7AG057700 Rh7BG057500 Rh7CG059100 Rh7DG057300
rosa_wichuraiana	Rw0G004370 Rw0G016070 Rw1G009080 Rw2G048580 Rw7G004720 Rw7G004730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	1284
AclWI	GGATC	4 cut(s)	20, 221, 614, 1345
AcuI	CTGAAG	3 cut(s)	437, 614, 780
AfaI	GTAC	4 cut(s)	88, 486, 691, 1217
AflII	CTTAAG	1 cut(s)	830
AgsI	TTSAA	2 cut(s)	1120, 1156
AjnI	CCWGG	4 cut(s)	350, 1112, 1339, 1362
AluBI	AGCT	8 cut(s)	55, 196, 589, 752, 850, 1162, 1183, 1376
AluI	AGCT	8 cut(s)	55, 196, 589, 752, 850, 1162, 1183, 1376
Alw21I	GWGCWC	1 cut(s)	503
Alw26I	GTCTC	1 cut(s)	1379
AlwI	GGATC	4 cut(s)	20, 221, 614, 1345
AoxI	GGCC	2 cut(s)	353, 962
ApeKI	GCWGC	4 cut(s)	52, 64, 132, 874
AseI	ATTAAT	2 cut(s)	416, 867
AspLEI	GCGC	1 cut(s)	567
AspS9I	GGNCC	2 cut(s)	305, 1337
AsuHPI	GGTGA	4 cut(s)	679, 804, 1025, 1288
AvaII	GGWCC	2 cut(s)	305, 1337
BaeI	ACNNNNGTAYC	2 cut(s)	747, 780
Bbv12I	GWGCWC	1 cut(s)	503
BbvI	GCAGC	4 cut(s)	64, 76, 119, 861
BccI	CCATC	5 cut(s)	238, 631, 793, 889, 1117
BciT130I	CCWGG	4 cut(s)	352, 1114, 1341, 1364
BciVI	GTATCC	1 cut(s)	1498
BcoDI	GTCTC	1 cut(s)	1379
BfaI	CTAG	1 cut(s)	488
BfmI	CTRYAG	2 cut(s)	910, 1462
BfrI	CTTAAG	1 cut(s)	830
BfuI	GTATCC	1 cut(s)	1498
BisI	GCNGC	4 cut(s)	53, 65, 133, 875
BlsI	GCNGC	4 cut(s)	54, 66, 134, 876
BmcAI	AGTACT	1 cut(s)	486
Bme1390I	CCNGG	4 cut(s)	352, 1114, 1341, 1364
Bme18I	GGWCC	2 cut(s)	305, 1337
BmgT120I	GGNCC	2 cut(s)	305, 1337
BmiI	GGNNCC	3 cut(s)	423, 744, 1091
BmrFI	CCNGG	4 cut(s)	352, 1114, 1341, 1364
BmsI	GCATC	3 cut(s)	204, 289, 420
BpmI	CTGGAG	1 cut(s)	1362
BpuEI	CTTGAG	1 cut(s)	1205
BsaBI	GATNNNNATC	1 cut(s)	1302
BsaJI	CCNNGG	2 cut(s)	350, 1199
BsaWI	WCCGGW	1 cut(s)	1273
Bse1I	ACTGG	2 cut(s)	200, 691
Bse8I	GATNNNNATC	1 cut(s)	1302
BseBI	CCWGG	4 cut(s)	352, 1114, 1341, 1364
BseDI	CCNNGG	2 cut(s)	350, 1199
BseGI	GGATG	3 cut(s)	673, 1249, 1486
BseJI	GATNNNNATC	1 cut(s)	1302
BseMII	CTCAG	4 cut(s)	528, 854, 1374, 1484
BseNI	ACTGG	2 cut(s)	200, 691
BseRI	GAGGAG	1 cut(s)	1224
BseXI	GCAGC	4 cut(s)	64, 76, 119, 861
BsgI	GTGCAG	2 cut(s)	83, 1087
BshFI	GGCC	2 cut(s)	355, 964
BsiHKAI	GWGCWC	1 cut(s)	503
BsiSI	CCGG	1 cut(s)	1274
BslFI	GGGAC	1 cut(s)	510
BsmAI	GTCTC	1 cut(s)	1379
BsmFI	GGGAC	1 cut(s)	510
BsmI	GAATGC	1 cut(s)	364
BsnI	GGCC	2 cut(s)	355, 964
Bsp1286I	GDGCHC	1 cut(s)	503
Bsp143I	GATC	5 cut(s)	25, 226, 619, 1192, 1350
BspACI	CCGC	1 cut(s)	1284
BspANI	GGCC	2 cut(s)	355, 964
BspCNI	CTCAG	4 cut(s)	527, 853, 1375, 1485
BspLI	GGNNCC	3 cut(s)	423, 744, 1091
BspMAI	CTGCAG	1 cut(s)	914
BspPI	GGATC	4 cut(s)	20, 221, 614, 1345
BspTI	CTTAAG	1 cut(s)	830
BsrI	ACTGG	2 cut(s)	200, 691
BssECI	CCNNGG	2 cut(s)	350, 1199
BssMI	GATC	5 cut(s)	25, 226, 619, 1192, 1350
BssT1I	CCWWGG	1 cut(s)	1199
Bst2UI	CCWGG	4 cut(s)	352, 1114, 1341, 1364
Bst4CI	ACNGT	3 cut(s)	987, 1236, 1390
Bst6I	CTCTTC	5 cut(s)	158, 456, 633, 814, 831
BstAFI	CTTAAG	1 cut(s)	830
BstC8I	GCNNGC	1 cut(s)	879
BstDEI	CTNAG	4 cut(s)	514, 840, 1383, 1493
BstF5I	GGATG	3 cut(s)	673, 1249, 1486
BstHHI	GCGC	1 cut(s)	567
BstKTI	GATC	5 cut(s)	28, 229, 622, 1195, 1353
BstMAI	GTCTC	1 cut(s)	1379
BstMBI	GATC	5 cut(s)	25, 226, 619, 1192, 1350
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 749
BstNI	CCWGG	4 cut(s)	352, 1114, 1341, 1364
BstSCI	CCNGG	4 cut(s)	350, 1112, 1339, 1362
BstSFI	CTRYAG	2 cut(s)	910, 1462
BstV1I	GCAGC	4 cut(s)	64, 76, 119, 861
BstX2I	RGATCY	3 cut(s)	226, 619, 1350
BstYI	RGATCY	3 cut(s)	226, 619, 1350
BsuI	GTATCC	1 cut(s)	1498
BsuRI	GGCC	2 cut(s)	355, 964
BtgZI	GCGATG	1 cut(s)	987
BtsCI	GGATG	3 cut(s)	673, 1249, 1486
BtsI	GCAGTG	1 cut(s)	1099
BtsIMutI	CAGTG	3 cut(s)	207, 1099, 1232
Cac8I	GCNNGC	1 cut(s)	879
CfoI	GCGC	1 cut(s)	567
Cfr13I	GGNCC	2 cut(s)	305, 1337
CsiI	ACCWGGT	1 cut(s)	1112
Csp6I	GTAC	4 cut(s)	87, 485, 690, 1216
CviAII	CATG	1 cut(s)	942
CviQI	GTAC	4 cut(s)	87, 485, 690, 1216
DdeI	CTNAG	4 cut(s)	514, 840, 1383, 1493
DpnI	GATC	5 cut(s)	27, 228, 621, 1194, 1352
DpnII	GATC	5 cut(s)	25, 226, 619, 1192, 1350
DraI	TTTAAA	1 cut(s)	922
Eam1104I	CTCTTC	5 cut(s)	158, 456, 633, 814, 831
EarI	CTCTTC	5 cut(s)	158, 456, 633, 814, 831
Eco130I	CCWWGG	1 cut(s)	1199
Eco47I	GGWCC	2 cut(s)	305, 1337
Eco57I	CTGAAG	3 cut(s)	437, 614, 780
EcoO109I	RGGNCCY	1 cut(s)	1337
EcoRII	CCWGG	4 cut(s)	350, 1112, 1339, 1362
EcoT14I	CCWWGG	1 cut(s)	1199
ErhI	CCWWGG	1 cut(s)	1199
FaeI	CATG	1 cut(s)	945
FaqI	GGGAC	1 cut(s)	510
FatI	CATG	1 cut(s)	941
Fnu4HI	GCNGC	4 cut(s)	53, 65, 133, 875
FokI	GGATG	3 cut(s)	660, 1256, 1493
Fsp4HI	GCNGC	4 cut(s)	53, 65, 133, 875
FspBI	CTAG	1 cut(s)	488
GlaI	GCGC	1 cut(s)	566
GluI	GCNGC	4 cut(s)	53, 65, 133, 875
GsuI	CTGGAG	1 cut(s)	1362
HaeIII	GGCC	2 cut(s)	355, 964
HapII	CCGG	1 cut(s)	1274
HhaI	GCGC	1 cut(s)	567
Hin1II	CATG	1 cut(s)	945
Hin6I	GCGC	1 cut(s)	565
HinP1I	GCGC	1 cut(s)	565
HindIII	AAGCTT	2 cut(s)	848, 1181
HinfI	GANTC	8 cut(s)	443, 902, 1061, 1223, 1247, 1298, 1325, 1411
HpaII	CCGG	1 cut(s)	1274
HphI	GGTGA	4 cut(s)	679, 804, 1025, 1288
Hpy166II	GTNNAC	2 cut(s)	1033, 1279
Hpy188I	TCNGA	7 cut(s)	262, 478, 517, 652, 843, 894, 1425
Hpy188III	TCNNGA	3 cut(s)	860, 1120, 1312
Hpy8I	GTNNAC	2 cut(s)	1033, 1279
HpyAV	CCTTC	6 cut(s)	51, 252, 468, 735, 1361, 1458
HpyCH4III	ACNGT	3 cut(s)	987, 1236, 1390
HpyCH4V	TGCA	8 cut(s)	64, 122, 302, 362, 641, 796, 912, 1104
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 749
HpyF3I	CTNAG	4 cut(s)	514, 840, 1383, 1493
Hsp92II	CATG	1 cut(s)	945
HspAI	GCGC	1 cut(s)	565
Kzo9I	GATC	5 cut(s)	25, 226, 619, 1192, 1350
LmnI	GCTCC	2 cut(s)	49, 748
Lsp1109I	GCAGC	4 cut(s)	64, 76, 119, 861
LweI	GCATC	3 cut(s)	204, 289, 420
MabI	ACCWGGT	1 cut(s)	1112
MaeI	CTAG	1 cut(s)	488
MaeIII	GTNAC	3 cut(s)	279, 667, 732
MalI	GATC	5 cut(s)	27, 228, 621, 1194, 1352
MboI	GATC	5 cut(s)	25, 226, 619, 1192, 1350
MflI	RGATCY	3 cut(s)	226, 619, 1350
MhlI	GDGCHC	1 cut(s)	503
MluCI	AATT	4 cut(s)	269, 568, 1073, 1169
MmeI	TCCRAC	1 cut(s)	1251
MseI	TTAA	8 cut(s)	291, 335, 369, 416, 831, 867, 921, 957
MspCI	CTTAAG	1 cut(s)	830
MspI	CCGG	1 cut(s)	1274
MspR9I	CCNGG	4 cut(s)	352, 1114, 1341, 1364
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	4 cut(s)	352, 1114, 1341, 1364
MwoI	GCNNNNNNNGC	2 cut(s)	61, 749
NdeII	GATC	5 cut(s)	25, 226, 619, 1192, 1350
NlaIII	CATG	1 cut(s)	945
NlaIV	GGNNCC	3 cut(s)	423, 744, 1091
NmuCI	GTSAC	3 cut(s)	279, 667, 732
PctI	GAATGC	1 cut(s)	364
PfeI	GAWTC	8 cut(s)	443, 902, 1061, 1223, 1247, 1298, 1325, 1411
PkrI	GCNGC	4 cut(s)	54, 66, 134, 876
PpuMI	RGGWCCY	1 cut(s)	1337
PshBI	ATTAAT	2 cut(s)	416, 867
Psp5II	RGGWCCY	1 cut(s)	1337
Psp6I	CCWGG	4 cut(s)	350, 1112, 1339, 1362
PspGI	CCWGG	4 cut(s)	350, 1112, 1339, 1362
PspN4I	GGNNCC	3 cut(s)	423, 744, 1091
PspPI	GGNCC	2 cut(s)	305, 1337
PspPPI	RGGWCCY	1 cut(s)	1337
PstI	CTGCAG	1 cut(s)	914
PsuI	RGATCY	3 cut(s)	226, 619, 1350
RsaI	GTAC	4 cut(s)	88, 486, 691, 1217
RsaNI	GTAC	4 cut(s)	87, 485, 690, 1216
SaqAI	TTAA	8 cut(s)	291, 335, 369, 416, 831, 867, 921, 957
SatI	GCNGC	4 cut(s)	53, 65, 133, 875
Sau3AI	GATC	5 cut(s)	25, 226, 619, 1192, 1350
Sau96I	GGNCC	2 cut(s)	305, 1337
ScaI	AGTACT	1 cut(s)	486
ScrFI	CCNGG	4 cut(s)	352, 1114, 1341, 1364
SduI	GDGCHC	1 cut(s)	503
SexAI	ACCWGGT	1 cut(s)	1112
SfaNI	GCATC	3 cut(s)	204, 289, 420
SfcI	CTRYAG	2 cut(s)	910, 1462
SinI	GGWCC	2 cut(s)	305, 1337
SmlI	CTYRAG	2 cut(s)	830, 1184
SmoI	CTYRAG	2 cut(s)	830, 1184
Sse9I	AATT	4 cut(s)	269, 568, 1073, 1169
SsiI	CCGC	1 cut(s)	1284
SspI	AATATT	4 cut(s)	13, 414, 471, 645
SspMI	CTAG	1 cut(s)	488
StyD4I	CCNGG	4 cut(s)	350, 1112, 1339, 1362
StyI	CCWWGG	1 cut(s)	1199
TaaI	ACNGT	3 cut(s)	987, 1236, 1390
TasI	AATT	4 cut(s)	269, 568, 1073, 1169
TatI	WGTACW	3 cut(s)	86, 484, 1215
TfiI	GAWTC	8 cut(s)	443, 902, 1061, 1223, 1247, 1298, 1325, 1411
Tru1I	TTAA	8 cut(s)	291, 335, 369, 416, 831, 867, 921, 957
Tru9I	TTAA	8 cut(s)	291, 335, 369, 416, 831, 867, 921, 957
TscAI	CASTG	3 cut(s)	207, 1106, 1239
TseFI	GTSAC	3 cut(s)	279, 667, 732
TseI	GCWGC	4 cut(s)	52, 64, 132, 874
Tsp45I	GTSAC	3 cut(s)	279, 667, 732
TspDTI	ATGAA	3 cut(s)	558, 732, 1320
TspGWI	ACGGA	1 cut(s)	1343
TspRI	CASTG	3 cut(s)	207, 1106, 1239
Vha464I	CTTAAG	1 cut(s)	830
VpaK11BI	GGWCC	2 cut(s)	305, 1337
VspI	ATTAAT	2 cut(s)	416, 867
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1120
XspI	CTAG	1 cut(s)	488
ZrmI	AGTACT	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.