Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000879

Physical Location & Seq

Genomic Coordinates Reverse (-)

21802986 .. 21805484

Gene Structure 2499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG107100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGCTCCAATCGCACTGCACTTCTACCAGGTTCAAGACGGTGGAGAACAAGAATGAGCCCCTCGGTTTGAAAGAGCTTAGAAAATTATGGGAGAAGCTTGAGCCTGATCTTGCTTGGGCGAGAGGAGAGTACAATGAATCCAACACAATATTATTGGATGATTCTCCATATAAGGCTTTGCTCAATCCGGTGAACACCGCCATATTCCCTGATTCGTATCAGTTCAGGAACAGAGAAGATTCTTCATTAGTACCTGGAGGCAATATCCGTTCCTACCTGGAATGGTTAGCTATGGCTGAGAGTGTCCAAAAATATGTGGAACAGAATCCATTTGGAACTAATAAGAGAAGTGGAGAAAAGAGCTTCTACCCTTGTACCAGAGAAAGACTAGTCGATTCGGATTGCTGCAATGCAGAGAATAGAAGGGCTTGTCTATGGAGGGGTACACCAGTCTCATTTACTCCCCAGCCATCTGCTTCTGCTCATCTACCTGGATATGGAACTTCGGCTACTGTTGCAATGGATAGAACTTCTAGTTTATCCTCTAGGACTTCTTTCTCTTCAGGACTTCATCTGTCACAAGCGAAGTTACATGGTAGAGGTACTGAGCCTAGTCTGGAAAGTGTGTTGCATGCAAGCAAACAGAAGGTCAGTGCAATTGAAAGCATGCTTAGAGGTTTGGAGTTGTTTGACAGACATAATTCTTCAACTTTTTGGTCATCTGGTCTGGATCTAGGTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

247

Amino Acids

27.62

Weight (kDa)

7.67

Isoelectric Point (pI)

56.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29760 AT3G29760 AT3G29760 AT3G29760 AT3G29760
fragaria_vesca	FvH4_5g13671 FvH4_5g13671 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700 FvH4_6g46700
malus_domestica	MD06G1203100.v1.1 MD09G1068500.v1.1 MD14G1213700.v1.1 MD17G1061400.v1.1
prunus_persica	Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.3G252300_v2.0.a1 Prupe.5G206600_v2.0.a1
pyrus_communis	pycom06g18090 pycom12433g00100 pycom14g17710 pycom17g06130
rosa_chinensis	RchiOBHm_Chr1g0330571 RchiOBHm_Chr1g0330791 RchiOBHm_Chr1g0330841 RchiOBHm_Chr2g0165581 RchiOBHm_Chr7g0183261 RchiOBHm_Chr7g0183271
rosa_laevigata	RLG00000005061 RLG00000021541
rosa_multiflora	Rmu_sc0000815.1_g000003 Rmu_sc0005425.1_g000020 Rmu_sc0008744.1_g000011 Rmu_sc0014529.1_g000002 Rmu_sc0018426.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085710 Rroxscaffold_3G00270610
rosa_rugosa	Rorug02G0516200 Rorug05G0496600 Rorug05G0496600 Rorug05G0496600 Rorug06G0455700
rosa_samantha	Rh1AG107500 Rh1AG107600 Rh1AG111800 Rh1CG103400 Rh1CG106100 Rh1CG107100 Rh1DG113000 Rh2AG582300 Rh2BG594500 Rh2CG564400 Rh2DG604400 Rh7AG057700 Rh7BG057500 Rh7CG059100 Rh7DG057300
rosa_wichuraiana	Rw0G004370 Rw0G016070 Rw1G009080 Rw2G048580 Rw7G004720 Rw7G004730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	737
AccB1I	GGYRCC	1 cut(s)	737
AciI	CCGC	1 cut(s)	198
AclWI	GGATC	1 cut(s)	738
AcuI	CTGAAG	1 cut(s)	546
AfaI	GTAC	6 cut(s)	131, 252, 376, 445, 604, 739
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgsI	TTSAA	4 cut(s)	34, 70, 662, 708
AhlI	ACTAGT	1 cut(s)	388
AjnI	CCWGG	4 cut(s)	26, 253, 276, 490
AluBI	AGCT	4 cut(s)	76, 97, 290, 363
AluI	AGCT	4 cut(s)	76, 97, 290, 363
Alw26I	GTCTC	1 cut(s)	457
AlwI	GGATC	1 cut(s)	738
ApeKI	GCWGC	1 cut(s)	405
ArsI	GACNNNNNNTTYG	2 cut(s)	633, 665
Asp718I	GGTACC	1 cut(s)	737
AsuHPI	GGTGA	1 cut(s)	202
BaeI	ACNNNNGTAYC	4 cut(s)	358, 391, 435, 468
BanI	GGYRCC	1 cut(s)	737
BanII	GRGCYC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	392
BccI	CCATC	1 cut(s)	478
BciT130I	CCWGG	4 cut(s)	28, 255, 278, 492
BcoDI	GTCTC	1 cut(s)	457
BcuI	ACTAGT	1 cut(s)	388
BfaI	CTAG	5 cut(s)	389, 534, 546, 612, 734
BisI	GCNGC	1 cut(s)	406
BlsI	GCNGC	1 cut(s)	407
Bme1390I	CCNGG	4 cut(s)	28, 255, 278, 492
BmiI	GGNNCC	1 cut(s)	739
BmrFI	CCNGG	4 cut(s)	28, 255, 278, 492
BpmI	CTGGAG	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	119
BsaBI	GATNNNNATC	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	61
BsaWI	WCCGGW	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse1I	ACTGG	1 cut(s)	449
Bse3DI	GCAATG	2 cut(s)	415, 525
Bse8I	GATNNNNATC	1 cut(s)	216
BseBI	CCWGG	4 cut(s)	28, 255, 278, 492
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	1 cut(s)	163
BseJI	GATNNNNATC	1 cut(s)	216
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMI	GCAATG	2 cut(s)	415, 525
BseMII	CTCAG	2 cut(s)	288, 597
BseNI	ACTGG	1 cut(s)	449
BseRI	GAGGAG	1 cut(s)	138
BseXI	GCAGC	1 cut(s)	392
BseYI	CCCAGC	1 cut(s)	465
BshNI	GGYRCC	1 cut(s)	737
BsiSI	CCGG	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmAI	GTCTC	1 cut(s)	457
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	2 cut(s)	106, 730
BspACI	CCGC	1 cut(s)	198
BspCNI	CTCAG	2 cut(s)	289, 598
BspLI	GGNNCC	1 cut(s)	739
BspPI	GGATC	1 cut(s)	738
BspT107I	GGYRCC	1 cut(s)	737
BsrDI	GCAATG	2 cut(s)	415, 525
BsrI	ACTGG	1 cut(s)	449
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	2 cut(s)	106, 730
Bst2UI	CCWGG	4 cut(s)	28, 255, 278, 492
Bst4CI	ACNGT	2 cut(s)	40, 514
Bst6I	CTCTTC	1 cut(s)	565
BstC8I	GCNNGC	3 cut(s)	633, 637, 668
BstDEI	CTNAG	4 cut(s)	77, 297, 606, 671
BstF5I	GGATG	1 cut(s)	163
BstKTI	GATC	2 cut(s)	109, 733
BstMAI	GTCTC	1 cut(s)	457
BstMBI	GATC	2 cut(s)	106, 730
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 515
BstNI	CCWGG	4 cut(s)	28, 255, 278, 492
BstNSI	RCATGY	2 cut(s)	635, 670
BstSCI	CCNGG	4 cut(s)	26, 253, 276, 490
BstV1I	GCAGC	1 cut(s)	392
BstX2I	RGATCY	1 cut(s)	730
BstYI	RGATCY	1 cut(s)	730
BtsCI	GGATG	1 cut(s)	163
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	2 cut(s)	13, 658
Cac8I	GCNNGC	3 cut(s)	633, 637, 668
CsiI	ACCWGGT	1 cut(s)	26
Csp6I	GTAC	6 cut(s)	130, 251, 375, 444, 603, 738
CviAII	CATG	3 cut(s)	593, 632, 667
CviQI	GTAC	6 cut(s)	130, 251, 375, 444, 603, 738
DdeI	CTNAG	4 cut(s)	77, 297, 606, 671
DpnI	GATC	2 cut(s)	108, 732
DpnII	GATC	2 cut(s)	106, 730
Eam1104I	CTCTTC	1 cut(s)	565
EarI	CTCTTC	1 cut(s)	565
Eco24I	GRGCYC	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	546
EcoRII	CCWGG	4 cut(s)	26, 253, 276, 490
EcoT38I	GRGCYC	1 cut(s)	60
FaeI	CATG	3 cut(s)	596, 635, 670
FatI	CATG	3 cut(s)	592, 631, 666
Fnu4HI	GCNGC	1 cut(s)	406
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	1 cut(s)	406
FspBI	CTAG	5 cut(s)	389, 534, 546, 612, 734
GluI	GCNGC	1 cut(s)	406
GsaI	CCCAGC	1 cut(s)	469
GsuI	CTGGAG	1 cut(s)	276
HapII	CCGG	1 cut(s)	188
Hin1II	CATG	3 cut(s)	596, 635, 670
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	6 cut(s)	137, 161, 212, 239, 325, 395
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	2 cut(s)	193, 446
Hpy188I	TCNGA	1 cut(s)	400
Hpy188III	TCNNGA	5 cut(s)	34, 226, 564, 617, 728
Hpy8I	GTNNAC	2 cut(s)	193, 446
HpyAV	CCTTC	2 cut(s)	417, 640
HpyCH4III	ACNGT	2 cut(s)	40, 514
HpyCH4V	TGCA	7 cut(s)	18, 408, 413, 518, 631, 635, 656
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 515
HpyF3I	CTNAG	4 cut(s)	77, 297, 606, 671
Hsp92II	CATG	3 cut(s)	596, 635, 670
KpnI	GGTACC	1 cut(s)	741
Kzo9I	GATC	2 cut(s)	106, 730
LmnI	GCTCC	1 cut(s)	9
Lsp1109I	GCAGC	1 cut(s)	392
MabI	ACCWGGT	1 cut(s)	26
MaeI	CTAG	5 cut(s)	389, 534, 546, 612, 734
MaeIII	GTNAC	2 cut(s)	576, 588
MalI	GATC	2 cut(s)	108, 732
MboI	GATC	2 cut(s)	106, 730
MboII	GAAGA	4 cut(s)	234, 248, 552, 696
MfeI	CAATTG	1 cut(s)	657
MflI	RGATCY	1 cut(s)	730
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	3 cut(s)	83, 657, 700
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	7 cut(s)	71, 116, 251, 432, 553, 593, 668
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	4 cut(s)	28, 255, 278, 492
MunI	CAATTG	1 cut(s)	657
MvaI	CCWGG	4 cut(s)	28, 255, 278, 492
MwoI	GCNNNNNNNGC	2 cut(s)	10, 515
NdeII	GATC	2 cut(s)	106, 730
NlaIII	CATG	3 cut(s)	596, 635, 670
NlaIV	GGNNCC	1 cut(s)	739
NmuCI	GTSAC	1 cut(s)	576
NspI	RCATGY	2 cut(s)	635, 670
PaeI	GCATGC	2 cut(s)	635, 670
PfeI	GAWTC	6 cut(s)	137, 161, 212, 239, 325, 395
PkrI	GCNGC	1 cut(s)	407
Psp6I	CCWGG	4 cut(s)	26, 253, 276, 490
PspFI	CCCAGC	1 cut(s)	465
PspGI	CCWGG	4 cut(s)	26, 253, 276, 490
PspN4I	GGNNCC	1 cut(s)	739
PsrI	GAACNNNNNNTAC	2 cut(s)	493, 525
PsuI	RGATCY	1 cut(s)	730
RsaI	GTAC	6 cut(s)	131, 252, 376, 445, 604, 739
RsaNI	GTAC	6 cut(s)	130, 251, 375, 444, 603, 738
SatI	GCNGC	1 cut(s)	406
Sau3AI	GATC	2 cut(s)	106, 730
ScrFI	CCNGG	4 cut(s)	28, 255, 278, 492
SduI	GDGCHC	1 cut(s)	60
SexAI	ACCWGGT	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
SpeI	ACTAGT	1 cut(s)	388
SphI	GCATGC	2 cut(s)	635, 670
Sse9I	AATT	3 cut(s)	83, 657, 700
SsiI	CCGC	1 cut(s)	198
SspI	AATATT	1 cut(s)	150
SspMI	CTAG	5 cut(s)	389, 534, 546, 612, 734
StyD4I	CCNGG	4 cut(s)	26, 253, 276, 490
TaaI	ACNGT	2 cut(s)	40, 514
TaqI	TCGA	1 cut(s)	393
TasI	AATT	3 cut(s)	83, 657, 700
TatI	WGTACW	1 cut(s)	129
TfiI	GAWTC	6 cut(s)	137, 161, 212, 239, 325, 395
TscAI	CASTG	2 cut(s)	20, 658
TseFI	GTSAC	1 cut(s)	576
TseI	GCWGC	1 cut(s)	405
Tsp45I	GTSAC	1 cut(s)	576
TspDTI	ATGAA	3 cut(s)	150, 234, 560
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	2 cut(s)	20, 658
XceI	RCATGY	2 cut(s)	635, 670
XspI	CTAG	5 cut(s)	389, 534, 546, 612, 734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.