Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007331

Physical Location & Seq

Genomic Coordinates Reverse (-)

81562873 .. 81566381

Gene Structure 3509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG594400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGGCAACCTCTGCGCCATCCTTGCCCCCAAACCCCCCCTCAAGAAAAAGCCCATTAAGCGCCTCCCGAACCCGCCGCCCGTACCCAACTCCAGCACCCGCTGGACCCGGATCCGATCCTCCCGCAAACAAAACCCGGATGACGCTCTCCTCCAAGAACAGGCTCTCGCCGCCGCGATCCTCTTCCAGCAGCACCAGCAAAACGGCGGCGGTTCTTTGCCGTTTGATCGCTCCACATCGCTGCGCTACCCCAATAATAACAACTCCAGCTCCAAGAAGGGCAACAGCAACGTCTTGCCACGTAGCTCCAGCACTCGGGCTCGGTCCTTAACCGACCCGCTGCTCCAGCCGCACCAGCTTGTGAACCAGGATGTAAAGATTGATGATCTTGAGACCAACCACTTTGTTCTTGTACATGGAGGCGGGTTTGGTGCTTGGTGTTGGTATAAAACCATTGCACTTCTAGAAGAGAGTGGTTATAAAGTTAATGCCATAGACTTAACTGGTTCTGGAATTCATTCATCTGATACAAACACCATTGCAAGTCTTTCAGAATATGTGAAGCCTCTTACTGATTTTCTTGAAAAGCTTCCTGATGGAAAAAAGGTGATCTTGGTGGGCCATGATTTTGGTGGCGCGTGCATATCGTATGCAATGGAGTTGTTTCCATCTAAAGTTGCGAAAGCCATTTTTCTTGCTGCTGCAATGTTGAAAAATGGACAGAGCACCCTTGATACGTTCTCCCAACAGGCAACTTCAGATGATCTTATGCGACAGGCTCAGATATTTTTGTATGCAAATGGGAATAATCAGCCTCCAACTGCTATTGATCTAGATAAATCAATGTTGAAGGATTTGTTATTCAACCAAAGTCCTTCCAAGGATGTTGCATTGGCATCTGTTTCAATGAGACCGATTCCATTTGCCCCAGTCCTGGAGAAAGTTTCACTTTCTGATTCGAAATATGGATCAGTTAGGCGGTTTTATATAGAAACATTAGAAGACAATGCCATACCCGTCACAGTCCAAGAGAGCATGATAAATGCAAGCCCCCCTGAACAGGTTCTGCGGTTAAAAGGCGCTGATCACTCACCTTTCTTCTCAAAGCCTCAAGCACTGCACAAGTTATTGGTAGAGATCTCAAAGATTTCTTCACCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

386

Amino Acids

42.29

Weight (kDa)

9.14

Isoelectric Point (pI)

50.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	133 - 370	2.1e-19	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	135 - 373	1.1e-20	Alpha/beta hydrolase family
Hydrolase_4	PF12146	135 - 241	1.3e-11	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29770 AT3G29770
fragaria_vesca	FvH4_6g46691 FvH4_6g46691 FvH4_6g46691 FvH4_6g46691 FvH4_6g46691 FvH4_6g46691
malus_domestica	MD09G1068600.v1.1 MD17G1061600.v1.1
prunus_persica	Prupe.3G252200_v2.0.a1
pyrus_communis	pycom12433g00090 pycom17g06140
rosa_chinensis	RchiOBHm_Chr2g0165571
rosa_laevigata	RLG00000021540
rosa_multiflora	Rmu_sc0016601.1_g000009 Rmu_sc0018426.1_g000004
rosa_roxburghii	Rroxscaffold_2G00085720
rosa_rugosa	Rorug02G0516200
rosa_samantha	Rh2AG582200 Rh2BG594400 Rh2CG564300 Rh2DG604300
rosa_wichuraiana	Rw2G048410 Rw2G048560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	480
AccII	CGCG	2 cut(s)	176, 638
AclWI	GGATC	5 cut(s)	106, 111, 119, 172, 976
AcsI	RAATTY	1 cut(s)	513
AcuI	CTGAAG	1 cut(s)	741
AfaI	GTAC	2 cut(s)	84, 414
AfiI	CCNNNNNNNGG	4 cut(s)	160, 315, 934, 1060
AgsI	TTSAA	5 cut(s)	584, 712, 850, 865, 906
AjnI	CCWGG	2 cut(s)	366, 933
AluBI	AGCT	4 cut(s)	270, 306, 358, 589
AluI	AGCT	4 cut(s)	270, 306, 358, 589
Alw21I	GWGCWC	1 cut(s)	728
Alw26I	GTCTC	2 cut(s)	386, 904
AlwI	GGATC	5 cut(s)	106, 111, 119, 172, 976
AlwNI	CAGNNNCTG	1 cut(s)	1066
Ama87I	CYCGRG	1 cut(s)	315
AoxI	GGCC	1 cut(s)	619
ApeKI	GCWGC	5 cut(s)	190, 241, 340, 698, 701
ApoI	RAATTY	1 cut(s)	513
Asp700I	GAANNNNTTC	3 cut(s)	517, 588, 1062
AspLEI	GCGC	5 cut(s)	17, 63, 246, 638, 1082
AspS9I	GGNCC	3 cut(s)	105, 324, 619
AsuC2I	CCSGG	2 cut(s)	109, 137
AsuHPI	GGTGA	3 cut(s)	619, 1083, 1146
AsuII	TTCGAA	1 cut(s)	959
AvaI	CYCGRG	1 cut(s)	315
AvaII	GGWCC	2 cut(s)	105, 324
BamHI	GGATCC	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	322
BbsI	GAAGAC	1 cut(s)	1008
Bbv12I	GWGCWC	1 cut(s)	728
BbvI	GCAGC	5 cut(s)	202, 228, 327, 685, 688
BccI	CCATC	3 cut(s)	26, 590, 676
BceAI	ACGGC	2 cut(s)	205, 220
BciT130I	CCWGG	2 cut(s)	368, 935
BclI	TGATCA	1 cut(s)	1084
BcnI	CCSGG	2 cut(s)	109, 137
BcoDI	GTCTC	2 cut(s)	386, 904
BfaI	CTAG	2 cut(s)	464, 833
BfoI	RGCGCY	2 cut(s)	64, 1083
BglII	AGATCT	1 cut(s)	1137
Bme1390I	CCNGG	4 cut(s)	109, 137, 368, 935
Bme18I	GGWCC	2 cut(s)	105, 324
BmeT110I	CYCGRG	1 cut(s)	315
BmgT120I	GGNCC	3 cut(s)	105, 324, 619
BmiI	GGNNCC	2 cut(s)	107, 113
BmrFI	CCNGG	4 cut(s)	109, 137, 368, 935
BmrI	ACTGGG	1 cut(s)	923
BmsI	GCATC	1 cut(s)	905
BmuI	ACTGGG	1 cut(s)	923
BpiI	GAAGAC	1 cut(s)	1008
BpmI	CTGGAG	5 cut(s)	76, 250, 292, 329, 956
Bpu14I	TTCGAA	1 cut(s)	959
BpuEI	CTTGAG	3 cut(s)	26, 410, 1095
BpuMI	CCSGG	2 cut(s)	109, 137
BsaAI	YACGTR	1 cut(s)	302
BsaI	GGTCTC	2 cut(s)	386, 904
BsaJI	CCNNGG	1 cut(s)	879
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	4 cut(s)	160, 315, 934, 1060
Bse1I	ACTGG	2 cut(s)	508, 929
Bse3DI	GCAATG	4 cut(s)	453, 537, 660, 711
BseBI	CCWGG	2 cut(s)	368, 935
BseDI	CCNNGG	1 cut(s)	879
BseGI	GGATG	4 cut(s)	18, 145, 376, 889
BseLI	CCNNNNNNNGG	4 cut(s)	160, 315, 934, 1060
BseMI	GCAATG	4 cut(s)	453, 537, 660, 711
BseMII	CTCAG	1 cut(s)	794
BseNI	ACTGG	2 cut(s)	508, 929
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	5 cut(s)	202, 228, 327, 685, 688
BsgI	GTGCAG	1 cut(s)	1103
Bsh1236I	CGCG	2 cut(s)	176, 638
BshFI	GGCC	1 cut(s)	621
BsiHKAI	GWGCWC	1 cut(s)	728
BsiHKCI	CYCGRG	1 cut(s)	315
BsiSI	CCGG	2 cut(s)	109, 137
BslI	CCNNNNNNNGG	4 cut(s)	160, 315, 934, 1060
BsmAI	GTCTC	2 cut(s)	386, 904
BsnI	GGCC	1 cut(s)	621
Bso31I	GGTCTC	2 cut(s)	386, 904
BsoBI	CYCGRG	1 cut(s)	315
Bsp119I	TTCGAA	1 cut(s)	959
Bsp1286I	GDGCHC	2 cut(s)	322, 728
Bsp1407I	TGTACA	1 cut(s)	412
BspANI	GGCC	1 cut(s)	621
BspCNI	CTCAG	1 cut(s)	793
BspFNI	CGCG	2 cut(s)	176, 638
BspLI	GGNNCC	2 cut(s)	107, 113
BspPI	GGATC	5 cut(s)	106, 111, 119, 172, 976
BspT104I	TTCGAA	1 cut(s)	959
BspTNI	GGTCTC	2 cut(s)	386, 904
BsrDI	GCAATG	4 cut(s)	453, 537, 660, 711
BsrGI	TGTACA	1 cut(s)	412
BsrI	ACTGG	2 cut(s)	508, 929
BssECI	CCNNGG	1 cut(s)	879
BssT1I	CCWWGG	1 cut(s)	879
Bst2UI	CCWGG	2 cut(s)	368, 935
Bst4CI	ACNGT	2 cut(s)	1024, 1158
Bst6I	CTCTTC	2 cut(s)	188, 462
BstAPI	GCANNNNNTGC	1 cut(s)	12
BstAUI	TGTACA	1 cut(s)	412
BstBAI	YACGTR	1 cut(s)	302
BstBI	TTCGAA	1 cut(s)	959
BstC8I	GCNNGC	2 cut(s)	640, 1048
BstDEI	CTNAG	1 cut(s)	780
BstF5I	GGATG	4 cut(s)	18, 145, 376, 889
BstFNI	CGCG	2 cut(s)	176, 638
BstH2I	RGCGCY	2 cut(s)	64, 1083
BstHHI	GCGC	5 cut(s)	17, 63, 246, 638, 1082
BstMAI	GTCTC	2 cut(s)	386, 904
BstMWI	GCNNNNNNNGC	8 cut(s)	12, 23, 58, 170, 196, 346, 349, 355
BstNI	CCWGG	2 cut(s)	368, 935
BstSCI	CCNGG	4 cut(s)	107, 135, 366, 933
BstUI	CGCG	2 cut(s)	176, 638
BstV1I	GCAGC	5 cut(s)	202, 228, 327, 685, 688
BstV2I	GAAGAC	1 cut(s)	1008
BstX2I	RGATCY	2 cut(s)	111, 1137
BstXI	CCANNNNNNTGG	1 cut(s)	629
BstYI	RGATCY	2 cut(s)	111, 1137
BsuRI	GGCC	1 cut(s)	621
BtgZI	GCGATG	1 cut(s)	222
BtsCI	GGATG	4 cut(s)	18, 145, 376, 889
BtsI	GCAGTG	1 cut(s)	1115
BtsIMutI	CAGTG	1 cut(s)	1115
Cac8I	GCNNGC	2 cut(s)	640, 1048
CaiI	CAGNNNCTG	1 cut(s)	1066
CfoI	GCGC	5 cut(s)	17, 63, 246, 638, 1082
Cfr13I	GGNCC	3 cut(s)	105, 324, 619
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	2 cut(s)	83, 413
CviAII	CATG	3 cut(s)	416, 623, 1036
CviQI	GTAC	2 cut(s)	83, 413
DdeI	CTNAG	1 cut(s)	780
Eam1104I	CTCTTC	2 cut(s)	188, 462
EarI	CTCTTC	2 cut(s)	188, 462
Eco130I	CCWWGG	1 cut(s)	879
Eco24I	GRGCYC	1 cut(s)	322
Eco31I	GGTCTC	2 cut(s)	386, 904
Eco47I	GGWCC	2 cut(s)	105, 324
Eco57I	CTGAAG	1 cut(s)	741
Eco88I	CYCGRG	1 cut(s)	315
EcoRI	GAATTC	1 cut(s)	513
EcoRII	CCWGG	2 cut(s)	366, 933
EcoT14I	CCWWGG	1 cut(s)	879
EcoT38I	GRGCYC	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	879
FaeI	CATG	3 cut(s)	419, 626, 1039
FalI	AAGNNNNNCTT	4 cut(s)	596, 628, 933, 965
FatI	CATG	3 cut(s)	415, 622, 1035
FauI	CCCGC	5 cut(s)	81, 107, 131, 345, 416
FbaI	TGATCA	1 cut(s)	1084
FokI	GGATG	4 cut(s)	5, 152, 383, 896
FriOI	GRGCYC	1 cut(s)	322
FspBI	CTAG	2 cut(s)	464, 833
GlaI	GCGC	5 cut(s)	16, 62, 245, 637, 1081
GsuI	CTGGAG	5 cut(s)	76, 250, 292, 329, 956
HaeII	RGCGCY	2 cut(s)	64, 1083
HaeIII	GGCC	1 cut(s)	621
HapII	CCGG	2 cut(s)	109, 137
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	5 cut(s)	17, 63, 246, 638, 1082
Hin1II	CATG	3 cut(s)	419, 626, 1039
Hin6I	GCGC	5 cut(s)	15, 61, 244, 636, 1080
HinP1I	GCGC	5 cut(s)	15, 61, 244, 636, 1080
HindIII	AAGCTT	1 cut(s)	587
HinfI	GANTC	2 cut(s)	916, 956
HpaII	CCGG	2 cut(s)	109, 137
HphI	GGTGA	3 cut(s)	619, 1083, 1146
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	6 cut(s)	116, 526, 553, 760, 783, 955
Hpy188III	TCNNGA	8 cut(s)	43, 67, 389, 464, 510, 581, 593, 833
Hpy8I	GTNNAC	1 cut(s)	364
HpyAV	CCTTC	3 cut(s)	271, 844, 885
HpyCH4III	ACNGT	2 cut(s)	1024, 1158
HpyCH4IV	ACGT	3 cut(s)	291, 301, 737
HpyCH4V	TGCA	9 cut(s)	458, 542, 642, 653, 704, 797, 890, 1046, 1120
HpyF10VI	GCNNNNNNNGC	8 cut(s)	12, 23, 58, 170, 196, 346, 349, 355
HpyF3I	CTNAG	1 cut(s)	780
HpySE526I	ACGT	3 cut(s)	291, 301, 737
Hsp92II	CATG	3 cut(s)	419, 626, 1039
HspAI	GCGC	5 cut(s)	15, 61, 244, 636, 1080
Ksp22I	TGATCA	1 cut(s)	1084
LmnI	GCTCC	4 cut(s)	236, 275, 311, 348
Lsp1109I	GCAGC	5 cut(s)	202, 228, 327, 685, 688
LweI	GCATC	1 cut(s)	905
MaeI	CTAG	2 cut(s)	464, 833
MaeII	ACGT	3 cut(s)	291, 301, 737
MaeIII	GTNAC	1 cut(s)	1018
MboII	GAAGA	5 cut(s)	175, 479, 1013, 1090, 1143
MflI	RGATCY	2 cut(s)	111, 1137
MhlI	GDGCHC	2 cut(s)	322, 728
MluCI	AATT	1 cut(s)	513
MmeI	TCCRAC	1 cut(s)	842
MroXI	GAANNNNTTC	3 cut(s)	517, 588, 1062
MseI	TTAA	5 cut(s)	57, 329, 486, 500, 1073
MspA1I	CMGCKG	2 cut(s)	102, 340
MspI	CCGG	2 cut(s)	109, 137
MspR9I	CCNGG	4 cut(s)	109, 137, 368, 935
MvaI	CCWGG	2 cut(s)	368, 935
MvnI	CGCG	2 cut(s)	176, 638
MwoI	GCNNNNNNNGC	8 cut(s)	12, 23, 58, 170, 196, 346, 349, 355
NciI	CCSGG	2 cut(s)	109, 137
NlaIII	CATG	3 cut(s)	419, 626, 1039
NlaIV	GGNNCC	2 cut(s)	107, 113
NmuCI	GTSAC	1 cut(s)	1018
NspV	TTCGAA	1 cut(s)	959
PdmI	GAANNNNTTC	3 cut(s)	517, 588, 1062
PfeI	GAWTC	2 cut(s)	916, 956
PfoI	TCCNGGA	1 cut(s)	933
Ppu21I	YACGTR	1 cut(s)	302
PsiI	TTATAA	1 cut(s)	480
Psp6I	CCWGG	2 cut(s)	366, 933
PspGI	CCWGG	2 cut(s)	366, 933
PspN4I	GGNNCC	2 cut(s)	107, 113
PspPI	GGNCC	3 cut(s)	105, 324, 619
PstNI	CAGNNNCTG	1 cut(s)	1066
PsuI	RGATCY	2 cut(s)	111, 1137
RsaI	GTAC	2 cut(s)	84, 414
RsaNI	GTAC	2 cut(s)	83, 413
SaqAI	TTAA	5 cut(s)	57, 329, 486, 500, 1073
Sau96I	GGNCC	3 cut(s)	105, 324, 619
ScrFI	CCNGG	4 cut(s)	109, 137, 368, 935
SduI	GDGCHC	2 cut(s)	322, 728
SfaNI	GCATC	1 cut(s)	905
SfuI	TTCGAA	1 cut(s)	959
SinI	GGWCC	2 cut(s)	105, 324
SmlI	CTYRAG	3 cut(s)	41, 389, 1110
SmoI	CTYRAG	3 cut(s)	41, 389, 1110
Sse9I	AATT	1 cut(s)	513
SspMI	CTAG	2 cut(s)	464, 833
StyD4I	CCNGG	4 cut(s)	107, 135, 366, 933
StyI	CCWWGG	1 cut(s)	879
TaaI	ACNGT	2 cut(s)	1024, 1158
TaiI	ACGT	3 cut(s)	294, 304, 740
TaqI	TCGA	1 cut(s)	959
TaqII	GACCGA	2 cut(s)	312, 928
TasI	AATT	1 cut(s)	513
TatI	WGTACW	1 cut(s)	412
TauI	GCSGC	5 cut(s)	79, 173, 176, 210, 352
TfiI	GAWTC	2 cut(s)	916, 956
Tru1I	TTAA	5 cut(s)	57, 329, 486, 500, 1073
Tru9I	TTAA	5 cut(s)	57, 329, 486, 500, 1073
TscAI	CASTG	1 cut(s)	1122
TseFI	GTSAC	1 cut(s)	1018
TseI	GCWGC	5 cut(s)	190, 241, 340, 698, 701
Tsp45I	GTSAC	1 cut(s)	1018
TspDTI	ATGAA	2 cut(s)	506, 510
TspRI	CASTG	1 cut(s)	1122
VpaK11BI	GGWCC	2 cut(s)	105, 324
XapI	RAATTY	1 cut(s)	513
XbaI	TCTAGA	2 cut(s)	463, 832
XcmI	CCANNNNNNNNNTGG	1 cut(s)	629
XmnI	GAANNNNTTC	3 cut(s)	517, 588, 1062
XspI	CTAG	2 cut(s)	464, 833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.