Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007331

Physical Location & Seq

Genomic Coordinates Reverse (-)

35536610 .. 35540215

Gene Structure 3606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g46691.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGGCAACATCTGCGCCATCCTCGCCCCCAAACCTCCCCTCAAGAAAAAGCCCATCAAGCGCCTCCCGAACCCGCCGCCCGTACCCAACTCATCCTCCACCCGCTGGACCCGGATCCGATCCTCCCGCAAACAAACCCCCGACGACGCTCTCCTCCAAGAACAAGCTCTCGCCGCCGCCATCCTCTTCCAGCAGCACCAGCAAAACGGCGGCGTTTCCTCTCTCCCCTTTGATCGCTCCTCCTCTTTACGCTACCCCAATACTAACTCCAGCTCCAAGAAAGGTAACAGCAACGTTTTGCCACGTAGCTCCAGCACTCGGGCTCGGTCACTCACCGACCCGCTGCTCCAGCCTCACCAGCTTGTGAATCAGGATGTAAAGATTGATGAACTTGAGACCAACCACTTTGTTCTTGTACATGGTGGCGGGTTTGGTGCTTGGTGTTGGTATAAAACCATTGCACTTCTGGAAGAGGGTGGTTATAAAGTTAATGCCATAGACTTAACTGGTTCTGGAATTCATTCATCTGATACAAACACCATTGCAAGTCTTTCAGAATATGTGAAGCCTCTTACTGATTTTCTTGAAAAGCTTCCTGAAGGAAAAAAGGTGATCTTGGTGGGCCATGATTTTGGTGGCGCGTGTATATCGTATGCAATGGAGTTGTTTCCATTTAAAGTTGCGAAGGCCATTTTTCTTGCTGCGGCAATGTTGAAAAATGGACAAAGCACCCTTGATACATTCTCTCAACAGGCAACTTCAGATGATCTTATGCGACAAGCTCAGATATTTTTGTATGCAAATGGGAATAATCAGCCTCCAACTGCTATTGATCTAGATAAATCAATGTTGAAGGATCTCTTATTCAACCAAAGTCCTTCCAAGGATGTTGCATTGGCATCTGTTTCAATGAGACCGATTCCATTTGCCCCAGTTCTGGAGAAAGTGTCACTTTCTGATTCGAAGTATGGATCAGTTAGGCGGTTTTATATAGAAACATTAGAAGACAATGCCATACCCATCACAGTCCAAGAGAGCATGATAAATGCAAGCCCCCCTGAACAGGTCCTGCGGTTAAAAGGCGCTGATCACTCACCTTTCTTCTCAAAGCCTCAAGCGCTACACAAGTTATTGGTAGAGATCTCAAAGGTCGGTTCACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

388

Amino Acids

42.38

Weight (kDa)

9.14

Isoelectric Point (pI)

51.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	134 - 248	9.7e-15	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	136 - 242	5.7e-15	Alpha/beta hydrolase family
Hydrolase_4	PF12146	136 - 241	5.1e-11	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29770 AT3G29770
fragaria_vesca	FvH4_6g46691 FvH4_6g46691 FvH4_6g46691 FvH4_6g46691 FvH4_6g46691 FvH4_6g46691
malus_domestica	MD09G1068600.v1.1 MD17G1061600.v1.1
prunus_persica	Prupe.3G252200_v2.0.a1
pyrus_communis	pycom12433g00090 pycom17g06140
rosa_chinensis	RchiOBHm_Chr2g0165571
rosa_laevigata	RLG00000021540
rosa_multiflora	Rmu_sc0016601.1_g000009 Rmu_sc0018426.1_g000004
rosa_roxburghii	Rroxscaffold_2G00085720
rosa_rugosa	Rorug02G0516200
rosa_samantha	Rh2AG582200 Rh2BG594400 Rh2CG564300 Rh2DG604300
rosa_wichuraiana	Rw2G048410 Rw2G048560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	483
AccB7I	CCANNNNNTGG	1 cut(s)	105
AccII	CGCG	1 cut(s)	641
AclI	AACGTT	1 cut(s)	294
AclWI	GGATC	5 cut(s)	109, 114, 122, 864, 979
AcsI	RAATTY	1 cut(s)	516
AcuI	CTGAAG	2 cut(s)	618, 744
AfaI	GTAC	2 cut(s)	84, 417
AfeI	AGCGCT	1 cut(s)	1119
AfiI	CCNNNNNNNGG	4 cut(s)	105, 318, 937, 1063
AgsI	TTSAA	5 cut(s)	587, 715, 853, 868, 909
AluBI	AGCT	6 cut(s)	167, 273, 309, 361, 592, 782
AluI	AGCT	6 cut(s)	167, 273, 309, 361, 592, 782
Alw26I	GTCTC	2 cut(s)	389, 907
AlwI	GGATC	5 cut(s)	109, 114, 122, 864, 979
AlwNI	CAGNNNCTG	1 cut(s)	1069
Ama87I	CYCGRG	1 cut(s)	318
Aor51HI	AGCGCT	1 cut(s)	1119
AoxI	GGCC	2 cut(s)	622, 687
ApeKI	GCWGC	3 cut(s)	193, 343, 701
ApoI	RAATTY	1 cut(s)	516
Asp700I	GAANNNNTTC	2 cut(s)	520, 591
AspLEI	GCGC	5 cut(s)	17, 63, 641, 1085, 1120
AspS9I	GGNCC	3 cut(s)	108, 622, 1066
AsuC2I	CCSGG	1 cut(s)	112
AsuHPI	GGTGA	5 cut(s)	325, 347, 622, 1086, 1149
AsuII	TTCGAA	1 cut(s)	962
AvaI	CYCGRG	1 cut(s)	318
AvaII	GGWCC	2 cut(s)	108, 1066
BamHI	GGATCC	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	325
BbsI	GAAGAC	1 cut(s)	1011
BbvI	GCAGC	3 cut(s)	205, 330, 688
BccI	CCATC	4 cut(s)	26, 62, 188, 1028
BceAI	ACGGC	1 cut(s)	223
BclI	TGATCA	1 cut(s)	1087
BcnI	CCSGG	1 cut(s)	112
BcoDI	GTCTC	2 cut(s)	389, 907
BfaI	CTAG	1 cut(s)	836
BfoI	RGCGCY	3 cut(s)	64, 1086, 1121
BglII	AGATCT	1 cut(s)	1140
BisI	GCNGC	8 cut(s)	77, 174, 177, 194, 211, 344, 702, 705
BlsI	GCNGC	8 cut(s)	78, 175, 178, 195, 212, 345, 703, 706
Bme1390I	CCNGG	1 cut(s)	112
Bme18I	GGWCC	2 cut(s)	108, 1066
BmeT110I	CYCGRG	1 cut(s)	318
BmgT120I	GGNCC	3 cut(s)	108, 622, 1066
BmiI	GGNNCC	2 cut(s)	110, 116
BmrFI	CCNGG	1 cut(s)	112
BmrI	ACTGGG	1 cut(s)	926
BmsI	GCATC	1 cut(s)	908
BmuI	ACTGGG	1 cut(s)	926
BpiI	GAAGAC	1 cut(s)	1011
BpmI	CTGGAG	4 cut(s)	253, 295, 332, 959
Bpu14I	TTCGAA	1 cut(s)	962
BpuEI	CTTGAG	3 cut(s)	26, 413, 1098
BpuMI	CCSGG	1 cut(s)	112
BsaAI	YACGTR	1 cut(s)	305
BsaI	GGTCTC	2 cut(s)	389, 907
BsaJI	CCNNGG	1 cut(s)	882
BsaXI	ACNNNNNCTCC	6 cut(s)	80, 110, 257, 287, 932, 962
Bsc4I	CCNNNNNNNGG	4 cut(s)	105, 318, 937, 1063
Bse1I	ACTGG	2 cut(s)	511, 932
Bse3DI	GCAATG	4 cut(s)	456, 540, 663, 714
BseDI	CCNNGG	1 cut(s)	882
BseGI	GGATG	5 cut(s)	18, 92, 180, 379, 892
BseLI	CCNNNNNNNGG	4 cut(s)	105, 318, 937, 1063
BseMI	GCAATG	4 cut(s)	456, 540, 663, 714
BseMII	CTCAG	1 cut(s)	797
BseNI	ACTGG	2 cut(s)	511, 932
BseRI	GAGGAG	3 cut(s)	143, 229, 232
BseXI	GCAGC	3 cut(s)	205, 330, 688
Bsh1236I	CGCG	1 cut(s)	641
BshFI	GGCC	2 cut(s)	624, 689
BsiHKCI	CYCGRG	1 cut(s)	318
BsiSI	CCGG	1 cut(s)	112
BslI	CCNNNNNNNGG	4 cut(s)	105, 318, 937, 1063
BsmAI	GTCTC	2 cut(s)	389, 907
BsnI	GGCC	2 cut(s)	624, 689
Bso31I	GGTCTC	2 cut(s)	389, 907
BsoBI	CYCGRG	1 cut(s)	318
Bsp119I	TTCGAA	1 cut(s)	962
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp1407I	TGTACA	1 cut(s)	415
BspANI	GGCC	2 cut(s)	624, 689
BspCNI	CTCAG	1 cut(s)	796
BspFNI	CGCG	1 cut(s)	641
BspLI	GGNNCC	2 cut(s)	110, 116
BspPI	GGATC	5 cut(s)	109, 114, 122, 864, 979
BspT104I	TTCGAA	1 cut(s)	962
BspTNI	GGTCTC	2 cut(s)	389, 907
BsrDI	GCAATG	4 cut(s)	456, 540, 663, 714
BsrGI	TGTACA	1 cut(s)	415
BsrI	ACTGG	2 cut(s)	511, 932
BssECI	CCNNGG	1 cut(s)	882
BssT1I	CCWWGG	1 cut(s)	882
Bst4CI	ACNGT	1 cut(s)	1027
Bst6I	CTCTTC	2 cut(s)	191, 465
BstAPI	GCANNNNNTGC	1 cut(s)	12
BstAUI	TGTACA	1 cut(s)	415
BstBAI	YACGTR	1 cut(s)	305
BstBI	TTCGAA	1 cut(s)	962
BstC8I	GCNNGC	1 cut(s)	1051
BstDEI	CTNAG	2 cut(s)	783, 1161
BstF5I	GGATG	5 cut(s)	18, 92, 180, 379, 892
BstFNI	CGCG	1 cut(s)	641
BstH2I	RGCGCY	3 cut(s)	64, 1086, 1121
BstHHI	GCGC	5 cut(s)	17, 63, 641, 1085, 1120
BstMAI	GTCTC	2 cut(s)	389, 907
BstMWI	GCNNNNNNNGC	8 cut(s)	12, 23, 58, 173, 199, 349, 358, 1117
BstSCI	CCNGG	1 cut(s)	110
BstUI	CGCG	1 cut(s)	641
BstV1I	GCAGC	3 cut(s)	205, 330, 688
BstV2I	GAAGAC	1 cut(s)	1011
BstX2I	RGATCY	3 cut(s)	114, 856, 1140
BstXI	CCANNNNNNTGG	1 cut(s)	632
BstYI	RGATCY	3 cut(s)	114, 856, 1140
BsuRI	GGCC	2 cut(s)	624, 689
BtsCI	GGATG	5 cut(s)	18, 92, 180, 379, 892
Cac8I	GCNNGC	1 cut(s)	1051
CaiI	CAGNNNCTG	1 cut(s)	1069
CfoI	GCGC	5 cut(s)	17, 63, 641, 1085, 1120
Cfr13I	GGNCC	3 cut(s)	108, 622, 1066
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	2 cut(s)	83, 416
CviAII	CATG	3 cut(s)	419, 626, 1039
CviQI	GTAC	2 cut(s)	83, 416
DdeI	CTNAG	2 cut(s)	783, 1161
DraI	TTTAAA	1 cut(s)	676
Eam1104I	CTCTTC	2 cut(s)	191, 465
EarI	CTCTTC	2 cut(s)	191, 465
Eco130I	CCWWGG	1 cut(s)	882
Eco24I	GRGCYC	1 cut(s)	325
Eco31I	GGTCTC	2 cut(s)	389, 907
Eco47I	GGWCC	2 cut(s)	108, 1066
Eco47III	AGCGCT	1 cut(s)	1119
Eco57I	CTGAAG	2 cut(s)	618, 744
Eco88I	CYCGRG	1 cut(s)	318
EcoO109I	RGGNCCY	1 cut(s)	1066
EcoRI	GAATTC	1 cut(s)	516
EcoT14I	CCWWGG	1 cut(s)	882
EcoT38I	GRGCYC	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	882
FaeI	CATG	3 cut(s)	422, 629, 1042
FalI	AAGNNNNNCTT	6 cut(s)	599, 631, 845, 877, 936, 968
FatI	CATG	3 cut(s)	418, 625, 1038
FauI	CCCGC	5 cut(s)	81, 110, 134, 348, 419
FbaI	TGATCA	1 cut(s)	1087
Fnu4HI	GCNGC	8 cut(s)	77, 174, 177, 194, 211, 344, 702, 705
FokI	GGATG	5 cut(s)	5, 79, 167, 386, 899
FriOI	GRGCYC	1 cut(s)	325
Fsp4HI	GCNGC	8 cut(s)	77, 174, 177, 194, 211, 344, 702, 705
FspBI	CTAG	1 cut(s)	836
GlaI	GCGC	5 cut(s)	16, 62, 640, 1084, 1119
GluI	GCNGC	8 cut(s)	77, 174, 177, 194, 211, 344, 702, 705
GsuI	CTGGAG	4 cut(s)	253, 295, 332, 959
HaeII	RGCGCY	3 cut(s)	64, 1086, 1121
HaeIII	GGCC	2 cut(s)	624, 689
HapII	CCGG	1 cut(s)	112
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	5 cut(s)	17, 63, 641, 1085, 1120
Hin1II	CATG	3 cut(s)	422, 629, 1042
Hin6I	GCGC	5 cut(s)	15, 61, 639, 1083, 1118
HinP1I	GCGC	5 cut(s)	15, 61, 639, 1083, 1118
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	3 cut(s)	367, 919, 959
HpaII	CCGG	1 cut(s)	112
HphI	GGTGA	5 cut(s)	325, 347, 622, 1086, 1149
Hpy166II	GTNNAC	1 cut(s)	1157
Hpy188I	TCNGA	6 cut(s)	119, 529, 556, 763, 786, 958
Hpy188III	TCNNGA	9 cut(s)	43, 67, 371, 467, 513, 584, 596, 836, 938
Hpy8I	GTNNAC	1 cut(s)	1157
Hpy99I	CGWCG	2 cut(s)	146, 149
HpyAV	CCTTC	4 cut(s)	593, 679, 847, 888
HpyCH4III	ACNGT	1 cut(s)	1027
HpyCH4IV	ACGT	2 cut(s)	294, 304
HpyCH4V	TGCA	6 cut(s)	461, 545, 656, 800, 893, 1049
HpyF10VI	GCNNNNNNNGC	8 cut(s)	12, 23, 58, 173, 199, 349, 358, 1117
HpyF3I	CTNAG	2 cut(s)	783, 1161
HpySE526I	ACGT	2 cut(s)	294, 304
Hsp92II	CATG	3 cut(s)	422, 629, 1042
HspAI	GCGC	5 cut(s)	15, 61, 639, 1083, 1118
Ksp22I	TGATCA	1 cut(s)	1087
LmnI	GCTCC	4 cut(s)	242, 278, 314, 351
Lsp1109I	GCAGC	3 cut(s)	205, 330, 688
LweI	GCATC	1 cut(s)	908
MaeI	CTAG	1 cut(s)	836
MaeII	ACGT	2 cut(s)	294, 304
MaeIII	GTNAC	3 cut(s)	284, 327, 948
MboII	GAAGA	4 cut(s)	178, 482, 1016, 1093
MflI	RGATCY	3 cut(s)	114, 856, 1140
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	1 cut(s)	516
MmeI	TCCRAC	1 cut(s)	845
MroXI	GAANNNNTTC	2 cut(s)	520, 591
MseI	TTAA	4 cut(s)	489, 503, 675, 1076
MspA1I	CMGCKG	2 cut(s)	105, 343
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	1 cut(s)	112
MvnI	CGCG	1 cut(s)	641
MwoI	GCNNNNNNNGC	8 cut(s)	12, 23, 58, 173, 199, 349, 358, 1117
NciI	CCSGG	1 cut(s)	112
NlaIII	CATG	3 cut(s)	422, 629, 1042
NlaIV	GGNNCC	2 cut(s)	110, 116
NmuCI	GTSAC	2 cut(s)	327, 948
NspV	TTCGAA	1 cut(s)	962
PdmI	GAANNNNTTC	2 cut(s)	520, 591
PfeI	GAWTC	3 cut(s)	367, 919, 959
PflMI	CCANNNNNTGG	1 cut(s)	105
PkrI	GCNGC	8 cut(s)	78, 175, 178, 195, 212, 345, 703, 706
Ppu21I	YACGTR	1 cut(s)	305
PpuMI	RGGWCCY	1 cut(s)	1066
PsiI	TTATAA	1 cut(s)	483
Psp1406I	AACGTT	1 cut(s)	294
Psp5II	RGGWCCY	1 cut(s)	1066
PspN4I	GGNNCC	2 cut(s)	110, 116
PspPI	GGNCC	3 cut(s)	108, 622, 1066
PspPPI	RGGWCCY	1 cut(s)	1066
PstNI	CAGNNNCTG	1 cut(s)	1069
PsuI	RGATCY	3 cut(s)	114, 856, 1140
RsaI	GTAC	2 cut(s)	84, 417
RsaNI	GTAC	2 cut(s)	83, 416
SaqAI	TTAA	4 cut(s)	489, 503, 675, 1076
SatI	GCNGC	8 cut(s)	77, 174, 177, 194, 211, 344, 702, 705
Sau96I	GGNCC	3 cut(s)	108, 622, 1066
ScrFI	CCNGG	1 cut(s)	112
SduI	GDGCHC	1 cut(s)	325
SfaNI	GCATC	1 cut(s)	908
SfuI	TTCGAA	1 cut(s)	962
SinI	GGWCC	2 cut(s)	108, 1066
SmlI	CTYRAG	3 cut(s)	41, 392, 1113
SmoI	CTYRAG	3 cut(s)	41, 392, 1113
Sse9I	AATT	1 cut(s)	516
SspMI	CTAG	1 cut(s)	836
StyD4I	CCNGG	1 cut(s)	110
StyI	CCWWGG	1 cut(s)	882
TaaI	ACNGT	1 cut(s)	1027
TaiI	ACGT	2 cut(s)	297, 307
TaqI	TCGA	1 cut(s)	962
TaqII	GACCGA	2 cut(s)	315, 931
TasI	AATT	1 cut(s)	516
TatI	WGTACW	1 cut(s)	415
TauI	GCSGC	5 cut(s)	79, 176, 179, 213, 707
TfiI	GAWTC	3 cut(s)	367, 919, 959
Tru1I	TTAA	4 cut(s)	489, 503, 675, 1076
Tru9I	TTAA	4 cut(s)	489, 503, 675, 1076
TseFI	GTSAC	2 cut(s)	327, 948
TseI	GCWGC	3 cut(s)	193, 343, 701
Tsp45I	GTSAC	2 cut(s)	327, 948
TspDTI	ATGAA	3 cut(s)	402, 509, 513
Van91I	CCANNNNNTGG	1 cut(s)	105
VpaK11BI	GGWCC	2 cut(s)	108, 1066
XapI	RAATTY	1 cut(s)	516
XbaI	TCTAGA	1 cut(s)	835
XcmI	CCANNNNNNNNNTGG	2 cut(s)	463, 632
XmnI	GAANNNNTTC	2 cut(s)	520, 591
XspI	CTAG	1 cut(s)	836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.