Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012433

Orthogroup ID

OG0007331

Physical Location & Seq

Genomic Coordinates Reverse (-)

77005 .. 79793

Gene Structure 2789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12433g00090.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGTTCCACACCACTCCACCTTCTCAACTCACCCTTCGGCCATTTGCCACCACTCTTTCAGCTCGTCAGTCATCACCCTCCTCTTTGCCTCCTTTTAACTTCTCTCTCTCTCTCTCTCTCTCTCCCCTCACTGTCTCTCTACATGCTTTACCAATCCCAATGGGCAACCTCTGCGCCATCCTCGCACCCAAACCCGCCAAGCGAAAGCCCATAAAGCGCCTACCCAACCCGCCGGCGCAACCCAATTCCAGCAACCGCTGGACCCGTGTCCGATCCTCCCGGAAAGAGAAGCTCGACGACGCTCTAATCCAGGAACAAGCTCTCGCCGCCGCAATTCTGTTCCAGCAGCACCAGCAGAGCGGCTCTCTGCCCTTTGATCGCTCCGCCTCCCTCCGCTACCCCAATTCCACCTCCAAGAAGGGCAGCAACGCCCTGCCCCGCAGCTCCAGCTCCCGCGCCAGGTCCCTCACCGACCCCCTCCTCCAGCCCCACCAGCTTGTTAATCAGGACGTTAAACTTGATGATCTAGAAACCAACCATTTTGTCCTTGTACATGGAGGTGGCTTTGGTGCTTGGTGTTGGTATAAAACCATTGCACTTCTAGAGGAGGGTGGTTTTAAAGTTACTGCCGTAGACTTGACCGGCTCTGGTATTCATTCATCTGATACAAACAGCGTTACAAGTCTTTCACAATACGTGAAGCCTCTTTCTGATTTTCTCGAAAAACTTCCGGAGGGGAAGAAGGTAATACTGGTGGGTCATGATTTCGGTGGTGCATGTGTATCATATGCAATGGAGTTGTTTCCAGATAAAGTCGCCAAGGCCATTTTTATTGCTGCAGCAATGTTAAAGAATGGACAAAGTACTCGTGAAATGTTCTCCCAACAGGCAAGTTCAGACGATCTTATGCGACAAGCCCAAGTATTTTTGTACGCAAATGGGAATGATCAGCCTCCAACTGCTATTGATCTTGATAAATCATTGTTGAAGGATTTGTTATTTAACCAAAGTCCTGCCAAGGATGTCGCATTGGCATCCGTCTCTATGAGGCCAATTCCCTTTGCCCCGGTTCTGGAGAAGCTCTCATTATCCGACTTGAAATATGGTTTGGTGAGGCGGTTCTATATAGAAACATCTGAAGACAATGCCATACCCATCACAGCCCAGGAGAGCATGATAAAAGAAAGCCCTCCGGAACAGGTCCTTCGCTTGAAAGGCGCTATCGATCATTCACCTTTTTTCTCAAAGCCTCAAGCCCTGCACAGGTTATTGGTGGAGATTTCAAAGATTTGTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

433

Amino Acids

47.37

Weight (kDa)

9.27

Isoelectric Point (pI)

52.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29770 AT3G29770
fragaria_vesca	FvH4_6g46691 FvH4_6g46691 FvH4_6g46691 FvH4_6g46691 FvH4_6g46691 FvH4_6g46691
malus_domestica	MD09G1068600.v1.1 MD17G1061600.v1.1
prunus_persica	Prupe.3G252200_v2.0.a1
pyrus_communis	pycom12433g00090 pycom17g06140
rosa_chinensis	RchiOBHm_Chr2g0165571
rosa_laevigata	RLG00000021540
rosa_multiflora	Rmu_sc0016601.1_g000009 Rmu_sc0018426.1_g000004
rosa_roxburghii	Rroxscaffold_2G00085720
rosa_rugosa	Rorug02G0516200
rosa_samantha	Rh2AG582200 Rh2BG594400 Rh2CG564300 Rh2DG604300
rosa_wichuraiana	Rw2G048410 Rw2G048560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	360
AccI	GTMKAC	1 cut(s)	633
AccII	CGCG	1 cut(s)	456
AccIII	TCCGGA	2 cut(s)	730, 1192
AclWI	GGATC	1 cut(s)	267
AcoI	YGGCCR	1 cut(s)	38
AcuI	CTGAAG	1 cut(s)	1158
AfaI	GTAC	4 cut(s)	552, 865, 932, 1294
AfiI	CCNNNNNNNGG	3 cut(s)	459, 1072, 1263
AgsI	TTSAA	4 cut(s)	988, 1099, 1213, 1284
AjnI	CCWGG	3 cut(s)	309, 458, 1164
AjuI	GAANNNNNNNTTGG	2 cut(s)	1091, 1123
AluBI	AGCT	7 cut(s)	62, 292, 320, 444, 450, 496, 1081
AluI	AGCT	7 cut(s)	62, 292, 320, 444, 450, 496, 1081
Alw26I	GTCTC	2 cut(s)	139, 1045
AlwI	GGATC	1 cut(s)	267
Aor13HI	TCCGGA	2 cut(s)	730, 1192
AoxI	GGCC	3 cut(s)	38, 822, 1049
ApeKI	GCWGC	5 cut(s)	346, 423, 441, 836, 839
Asp700I	GAANNNNTTC	1 cut(s)	726
AspLEI	GCGC	5 cut(s)	176, 219, 238, 458, 1220
AspS9I	GGNCC	3 cut(s)	261, 462, 1201
AsuC2I	CCSGG	2 cut(s)	280, 1067
AsuHPI	GGTGA	5 cut(s)	22, 66, 460, 1123, 1224
AvaII	GGWCC	3 cut(s)	261, 462, 1201
BauI	CACGAG	1 cut(s)	867
BbsI	GAAGAC	1 cut(s)	1146
BbvI	GCAGC	5 cut(s)	358, 435, 453, 823, 851
BccI	CCATC	2 cut(s)	185, 1163
BceAI	ACGGC	1 cut(s)	614
BciT130I	CCWGG	3 cut(s)	311, 460, 1166
BclI	TGATCA	1 cut(s)	946
BcnI	CCSGG	2 cut(s)	280, 1067
BcoDI	GTCTC	2 cut(s)	139, 1045
BfaI	CTAG	2 cut(s)	527, 602
BfmI	CTRYAG	1 cut(s)	837
BfoI	RGCGCY	2 cut(s)	220, 1221
BisI	GCNGC	8 cut(s)	327, 330, 347, 361, 424, 442, 837, 840
BlsI	GCNGC	8 cut(s)	328, 331, 348, 362, 425, 443, 838, 841
BmcAI	AGTACT	1 cut(s)	865
Bme1390I	CCNGG	5 cut(s)	280, 311, 460, 1067, 1166
Bme18I	GGWCC	3 cut(s)	261, 462, 1201
BmgT120I	GGNCC	3 cut(s)	261, 462, 1201
BmiI	GGNNCC	2 cut(s)	263, 464
BmrFI	CCNGG	5 cut(s)	280, 311, 460, 1067, 1166
BmsI	GCATC	1 cut(s)	1043
BoxI	GACNNNNGTC	1 cut(s)	266
BpiI	GAAGAC	1 cut(s)	1146
BplI	GAGNNNNNCTC	4 cut(s)	349, 381, 1067, 1099
BpmI	CTGGAG	3 cut(s)	430, 467, 1094
BpuEI	CTTGAG	1 cut(s)	1236
BpuMI	CCSGG	2 cut(s)	280, 1067
Bsa29I	ATCGAT	1 cut(s)	1224
BsaAI	YACGTR	1 cut(s)	697
BsaJI	CCNNGG	4 cut(s)	819, 1017, 1065, 1164
BsaWI	WCCGGW	2 cut(s)	730, 1192
Bsc4I	CCNNNNNNNGG	3 cut(s)	459, 1072, 1263
Bse118I	RCCGGY	2 cut(s)	232, 641
Bse1I	ACTGG	1 cut(s)	756
Bse3DI	GCAATG	3 cut(s)	591, 798, 849
BseAI	TCCGGA	2 cut(s)	730, 1192
BseBI	CCWGG	3 cut(s)	311, 460, 1166
BseCI	ATCGAT	1 cut(s)	1224
BseDI	CCNNGG	4 cut(s)	819, 1017, 1065, 1164
BseGI	GGATG	3 cut(s)	177, 1027, 1034
BseLI	CCNNNNNNNGG	3 cut(s)	459, 1072, 1263
BseMI	GCAATG	3 cut(s)	591, 798, 849
BseNI	ACTGG	1 cut(s)	756
BseRI	GAGGAG	3 cut(s)	70, 470, 620
BseXI	GCAGC	5 cut(s)	358, 435, 453, 823, 851
BsgI	GTGCAG	1 cut(s)	1244
Bsh1236I	CGCG	1 cut(s)	456
BshFI	GGCC	3 cut(s)	40, 824, 1051
BshVI	ATCGAT	1 cut(s)	1224
BsiSI	CCGG	6 cut(s)	233, 280, 642, 731, 1067, 1193
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	3 cut(s)	459, 1072, 1263
BsmAI	GTCTC	2 cut(s)	139, 1045
BsmBI	CGTCTC	1 cut(s)	1045
BsmFI	GGGAC	1 cut(s)	448
BsnI	GGCC	3 cut(s)	40, 824, 1051
Bsp13I	TCCGGA	2 cut(s)	730, 1192
Bsp1407I	TGTACA	2 cut(s)	550, 1292
Bsp143I	GATC	7 cut(s)	272, 376, 523, 901, 946, 967, 1225
BspANI	GGCC	3 cut(s)	40, 824, 1051
BspDI	ATCGAT	1 cut(s)	1224
BspEI	TCCGGA	2 cut(s)	730, 1192
BspFNI	CGCG	1 cut(s)	456
BspHI	TCATGA	1 cut(s)	760
BspLI	GGNNCC	2 cut(s)	263, 464
BspMAI	CTGCAG	1 cut(s)	841
BspPI	GGATC	1 cut(s)	267
BsrBI	CCGCTC	1 cut(s)	360
BsrDI	GCAATG	3 cut(s)	591, 798, 849
BsrFI	RCCGGY	2 cut(s)	232, 641
BsrGI	TGTACA	2 cut(s)	550, 1292
BsrI	ACTGG	1 cut(s)	756
BssAI	RCCGGY	2 cut(s)	232, 641
BssECI	CCNNGG	4 cut(s)	819, 1017, 1065, 1164
BssMI	GATC	7 cut(s)	272, 376, 523, 901, 946, 967, 1225
BssSI	CACGAG	1 cut(s)	867
BssT1I	CCWWGG	2 cut(s)	819, 1017
Bst2BI	CACGAG	1 cut(s)	867
Bst2UI	CCWGG	3 cut(s)	311, 460, 1166
Bst4CI	ACNGT	1 cut(s)	133
BstAPI	GCANNNNNTGC	1 cut(s)	171
BstAUI	TGTACA	2 cut(s)	550, 1292
BstBAI	YACGTR	1 cut(s)	697
BstC8I	GCNNGC	1 cut(s)	234
BstF5I	GGATG	3 cut(s)	177, 1027, 1034
BstFNI	CGCG	1 cut(s)	456
BstH2I	RGCGCY	2 cut(s)	220, 1221
BstHHI	GCGC	5 cut(s)	176, 219, 238, 458, 1220
BstKTI	GATC	7 cut(s)	275, 379, 526, 904, 949, 970, 1228
BstMAI	GTCTC	2 cut(s)	139, 1045
BstMBI	GATC	7 cut(s)	272, 376, 523, 901, 946, 967, 1225
BstMWI	GCNNNNNNNGC	8 cut(s)	171, 182, 214, 326, 352, 447, 493, 1215
BstNI	CCWGG	3 cut(s)	311, 460, 1166
BstNSI	RCATGY	2 cut(s)	146, 780
BstPAI	GACNNNNGTC	1 cut(s)	266
BstSCI	CCNGG	5 cut(s)	278, 309, 458, 1065, 1164
BstSFI	CTRYAG	1 cut(s)	837
BstUI	CGCG	1 cut(s)	456
BstV1I	GCAGC	5 cut(s)	358, 435, 453, 823, 851
BstV2I	GAAGAC	1 cut(s)	1146
Bsu15I	ATCGAT	1 cut(s)	1224
BsuRI	GGCC	3 cut(s)	40, 824, 1051
BsuTUI	ATCGAT	1 cut(s)	1224
BtsCI	GGATG	3 cut(s)	177, 1027, 1034
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	234
CciI	TCATGA	1 cut(s)	760
CfoI	GCGC	5 cut(s)	176, 219, 238, 458, 1220
Cfr10I	RCCGGY	2 cut(s)	232, 641
Cfr13I	GGNCC	3 cut(s)	261, 462, 1201
ClaI	ATCGAT	1 cut(s)	1224
CseI	GACGC	1 cut(s)	308
Csp6I	GTAC	4 cut(s)	551, 864, 931, 1293
CviAII	CATG	5 cut(s)	143, 554, 761, 777, 1174
CviQI	GTAC	4 cut(s)	551, 864, 931, 1293
DpnI	GATC	7 cut(s)	274, 378, 525, 903, 948, 969, 1227
DpnII	GATC	7 cut(s)	272, 376, 523, 901, 946, 967, 1225
DraI	TTTAAA	1 cut(s)	619
EaeI	YGGCCR	1 cut(s)	38
EciI	GGCGGA	1 cut(s)	373
Eco130I	CCWWGG	2 cut(s)	819, 1017
Eco47I	GGWCC	3 cut(s)	261, 462, 1201
Eco57I	CTGAAG	1 cut(s)	1158
EcoO109I	RGGNCCY	2 cut(s)	462, 1201
EcoRII	CCWGG	3 cut(s)	309, 458, 1164
EcoT14I	CCWWGG	2 cut(s)	819, 1017
ErhI	CCWWGG	2 cut(s)	819, 1017
Esp3I	CGTCTC	1 cut(s)	1045
FaeI	CATG	5 cut(s)	146, 557, 764, 780, 1177
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	5 cut(s)	142, 553, 760, 776, 1173
FauI	CCCGC	4 cut(s)	202, 237, 446, 461
FauNDI	CATATG	1 cut(s)	787
FbaI	TGATCA	1 cut(s)	946
FblI	GTMKAC	1 cut(s)	633
Fnu4HI	GCNGC	8 cut(s)	327, 330, 347, 361, 424, 442, 837, 840
FokI	GGATG	3 cut(s)	164, 1021, 1034
Fsp4HI	GCNGC	8 cut(s)	327, 330, 347, 361, 424, 442, 837, 840
FspBI	CTAG	2 cut(s)	527, 602
GlaI	GCGC	5 cut(s)	175, 218, 237, 457, 1219
GluI	GCNGC	8 cut(s)	327, 330, 347, 361, 424, 442, 837, 840
GsuI	CTGGAG	3 cut(s)	430, 467, 1094
HaeII	RGCGCY	2 cut(s)	220, 1221
HaeIII	GGCC	3 cut(s)	40, 824, 1051
HapII	CCGG	6 cut(s)	233, 280, 642, 731, 1067, 1193
HgaI	GACGC	1 cut(s)	308
HhaI	GCGC	5 cut(s)	176, 219, 238, 458, 1220
Hin1II	CATG	5 cut(s)	146, 557, 764, 780, 1177
Hin6I	GCGC	5 cut(s)	174, 217, 236, 456, 1218
HinP1I	GCGC	5 cut(s)	174, 217, 236, 456, 1218
HpaII	CCGG	6 cut(s)	233, 280, 642, 731, 1067, 1193
HphI	GGTGA	5 cut(s)	22, 66, 460, 1123, 1224
Hpy166II	GTNNAC	1 cut(s)	634
Hpy188I	TCNGA	6 cut(s)	272, 664, 712, 898, 1093, 1138
Hpy8I	GTNNAC	1 cut(s)	634
Hpy99I	CGWCG	2 cut(s)	299, 302
HpyAV	CCTTC	6 cut(s)	30, 44, 412, 736, 982, 1214
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4IV	ACGT	2 cut(s)	510, 696
HpyCH4V	TGCA	5 cut(s)	596, 776, 791, 839, 1261
HpyF10VI	GCNNNNNNNGC	8 cut(s)	171, 182, 214, 326, 352, 447, 493, 1215
HpySE526I	ACGT	2 cut(s)	510, 696
Hsp92II	CATG	5 cut(s)	146, 557, 764, 780, 1177
HspAI	GCGC	5 cut(s)	174, 217, 236, 456, 1218
Kpn2I	TCCGGA	2 cut(s)	730, 1192
KroI	GCCGGC	1 cut(s)	232
KroNI	GCCGGC	1 cut(s)	234
Ksp22I	TGATCA	1 cut(s)	946
Kzo9I	GATC	7 cut(s)	272, 376, 523, 901, 946, 967, 1225
LmnI	GCTCC	3 cut(s)	386, 449, 455
Lsp1109I	GCAGC	5 cut(s)	358, 435, 453, 823, 851
LweI	GCATC	1 cut(s)	1043
MaeI	CTAG	2 cut(s)	527, 602
MaeII	ACGT	2 cut(s)	510, 696
MaeIII	GTNAC	2 cut(s)	622, 676
MalI	GATC	7 cut(s)	274, 378, 525, 903, 948, 969, 1227
MbiI	CCGCTC	1 cut(s)	360
MboI	GATC	7 cut(s)	272, 376, 523, 901, 946, 967, 1225
MboII	GAAGA	2 cut(s)	751, 1151
MluCI	AATT	4 cut(s)	244, 333, 403, 1053
MmeI	TCCRAC	2 cut(s)	980, 1116
MreI	CGCCGGCG	1 cut(s)	232
MroI	TCCGGA	2 cut(s)	730, 1192
MroNI	GCCGGC	1 cut(s)	232
MroXI	GAANNNNTTC	1 cut(s)	726
MseI	TTAA	6 cut(s)	96, 501, 513, 618, 848, 1002
MslI	CAYNNNNRTG	1 cut(s)	558
MspA1I	CMGCKG	1 cut(s)	258
MspI	CCGG	6 cut(s)	233, 280, 642, 731, 1067, 1193
MspR9I	CCNGG	5 cut(s)	280, 311, 460, 1067, 1166
MvaI	CCWGG	3 cut(s)	311, 460, 1166
MvnI	CGCG	1 cut(s)	456
MwoI	GCNNNNNNNGC	8 cut(s)	171, 182, 214, 326, 352, 447, 493, 1215
NaeI	GCCGGC	1 cut(s)	234
NciI	CCSGG	2 cut(s)	280, 1067
NdeI	CATATG	1 cut(s)	787
NdeII	GATC	7 cut(s)	272, 376, 523, 901, 946, 967, 1225
NgoMIV	GCCGGC	1 cut(s)	232
NlaIII	CATG	5 cut(s)	146, 557, 764, 780, 1177
NlaIV	GGNNCC	2 cut(s)	263, 464
NspI	RCATGY	2 cut(s)	146, 780
PagI	TCATGA	1 cut(s)	760
PdiI	GCCGGC	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	726
PfoI	TCCNGGA	2 cut(s)	278, 309
PkrI	GCNGC	8 cut(s)	328, 331, 348, 362, 425, 443, 838, 841
Ppu21I	YACGTR	1 cut(s)	697
PpuMI	RGGWCCY	2 cut(s)	462, 1201
PshAI	GACNNNNGTC	1 cut(s)	266
Psp5II	RGGWCCY	2 cut(s)	462, 1201
Psp6I	CCWGG	3 cut(s)	309, 458, 1164
PspGI	CCWGG	3 cut(s)	309, 458, 1164
PspN4I	GGNNCC	2 cut(s)	263, 464
PspPI	GGNCC	3 cut(s)	261, 462, 1201
PspPPI	RGGWCCY	2 cut(s)	462, 1201
PstI	CTGCAG	1 cut(s)	841
RsaI	GTAC	4 cut(s)	552, 865, 932, 1294
RsaNI	GTAC	4 cut(s)	551, 864, 931, 1293
RseI	CAYNNNNRTG	1 cut(s)	558
SaqAI	TTAA	6 cut(s)	96, 501, 513, 618, 848, 1002
SatI	GCNGC	8 cut(s)	327, 330, 347, 361, 424, 442, 837, 840
Sau3AI	GATC	7 cut(s)	272, 376, 523, 901, 946, 967, 1225
Sau96I	GGNCC	3 cut(s)	261, 462, 1201
ScaI	AGTACT	1 cut(s)	865
ScrFI	CCNGG	5 cut(s)	280, 311, 460, 1067, 1166
SfaNI	GCATC	1 cut(s)	1043
SfcI	CTRYAG	1 cut(s)	837
SgrAI	CRCCGGYG	1 cut(s)	232
SinI	GGWCC	3 cut(s)	261, 462, 1201
SmiMI	CAYNNNNRTG	1 cut(s)	558
SmlI	CTYRAG	1 cut(s)	1251
SmoI	CTYRAG	1 cut(s)	1251
Sse9I	AATT	4 cut(s)	244, 333, 403, 1053
SspMI	CTAG	2 cut(s)	527, 602
StyD4I	CCNGG	5 cut(s)	278, 309, 458, 1065, 1164
StyI	CCWWGG	2 cut(s)	819, 1017
TaaI	ACNGT	1 cut(s)	133
TaiI	ACGT	2 cut(s)	513, 699
TaqI	TCGA	3 cut(s)	294, 720, 1224
TasI	AATT	4 cut(s)	244, 333, 403, 1053
TatI	WGTACW	3 cut(s)	550, 863, 1292
TauI	GCSGC	3 cut(s)	329, 332, 363
Tru1I	TTAA	6 cut(s)	96, 501, 513, 618, 848, 1002
Tru9I	TTAA	6 cut(s)	96, 501, 513, 618, 848, 1002
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	5 cut(s)	346, 423, 441, 836, 839
TspDTI	ATGAA	2 cut(s)	644, 648
TspGWI	ACGGA	1 cut(s)	1027
TspRI	CASTG	1 cut(s)	136
VpaK11BI	GGWCC	3 cut(s)	261, 462, 1201
XbaI	TCTAGA	2 cut(s)	526, 601
XceI	RCATGY	2 cut(s)	146, 780
XmiI	GTMKAC	1 cut(s)	633
XmnI	GAANNNNTTC	1 cut(s)	726
XspI	CTAG	2 cut(s)	527, 602
ZrmI	AGTACT	1 cut(s)	865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.