Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007331

Physical Location & Seq

Genomic Coordinates Forward (+)

7999761 .. 8003008

Gene Structure 3248 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00085720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGGCAACCTCTGCGCCATCCTCGCCCCCAAACCCCCCTCAAGAAAAAGCCCATTAAGCGCCTCCCGAACCCGCCGCCCGTACCCAACTCCAGCACCCGCTGGACCCGGATCCGATCCTCCCGCAAACAAAACCCTGATGACGCTCTCCTCCAAGAACAGGCTCTCGCCGCCGCGATCCTCTTCCAGCAGCACCAGCAAAACGGCGGCGGATGTAAAGATTGATGATCTTGAGACCAACCACTTTGTTCTTGTACATGGAGGTGGGTTTGGTGCTTGGTGTTGGTATAAAACCATTGCACTTCTAGAAGAGAGTGGTTATAAAGTTAATGCCATAGACTTAACTGGTTCTGGAATTCATTCATCTGATACAAACACCATTGCAAGTCTTTCAGAATATGTGAAGCCTCTTACTGATTTTCTTGAAAAGCTTCCTGATGGAAAAAAGGTGATCTTGGTGGGCCATGATTTTGGTGGTGCGTGCATATCGTATGCAATGGAGTTGTTTCCATCTAAAGTTGCGAAAGCCATTTTTCTTGCTGCTGCAATGTTAAAAAATGGACAGAGCACCCTTGATACGTTCTCCCAACAGGCAACTTCAGATGATCTTATGCGACAGGCTCAGATATTTTTGTATGCAAATGGGAATAATCAGCCTCCAACTGCTATTGATCTAGATAAATCAATGTTGAAGGATTTGTTATTCAACCAAAGTCCTTCCAAGGATGTTGCATTGGCATCTGTTTCAATGAGACCGATTCCATTTGCCCCAGTTCTGGAGAAAGTTTCACTTTCTGATTCGAAATATGGATCAGTTAGGCGGTTTTATATAGAAACATTAGAAGACAATGCCATACCCGTCACAGTCCAAGAGAGCATGATAAATGCAAGCCCCCCGAACAGGTTCTGCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

304

Amino Acids

32.72

Weight (kDa)

8.56

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	80 - 209	1.1e-18	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	82 - 290	3e-16	Alpha/beta hydrolase family
Hydrolase_4	PF12146	82 - 188	7.4e-12	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29770 AT3G29770
fragaria_vesca	FvH4_6g46691 FvH4_6g46691 FvH4_6g46691 FvH4_6g46691 FvH4_6g46691 FvH4_6g46691
malus_domestica	MD09G1068600.v1.1 MD17G1061600.v1.1
prunus_persica	Prupe.3G252200_v2.0.a1
pyrus_communis	pycom12433g00090 pycom17g06140
rosa_chinensis	RchiOBHm_Chr2g0165571
rosa_laevigata	RLG00000021540
rosa_multiflora	Rmu_sc0016601.1_g000009 Rmu_sc0018426.1_g000004
rosa_roxburghii	Rroxscaffold_2G00085720
rosa_rugosa	Rorug02G0516200
rosa_samantha	Rh2AG582200 Rh2BG594400 Rh2CG564300 Rh2DG604300
rosa_wichuraiana	Rw2G048410 Rw2G048560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	321
AccII	CGCG	1 cut(s)	175
AclWI	GGATC	5 cut(s)	105, 110, 118, 171, 817
AcsI	RAATTY	1 cut(s)	354
AcuI	CTGAAG	1 cut(s)	582
AfaI	GTAC	2 cut(s)	83, 255
AfiI	CCNNNNNNNGG	3 cut(s)	159, 775, 900
AgsI	TTSAA	4 cut(s)	425, 691, 706, 747
AluBI	AGCT	1 cut(s)	430
AluI	AGCT	1 cut(s)	430
Alw21I	GWGCWC	1 cut(s)	569
Alw26I	GTCTC	2 cut(s)	227, 745
AlwI	GGATC	5 cut(s)	105, 110, 118, 171, 817
AlwNI	CAGNNNCTG	1 cut(s)	906
AoxI	GGCC	1 cut(s)	460
ApeKI	GCWGC	3 cut(s)	189, 539, 542
ApoI	RAATTY	1 cut(s)	354
Asp700I	GAANNNNTTC	3 cut(s)	358, 429, 902
AspLEI	GCGC	2 cut(s)	17, 62
AspS9I	GGNCC	2 cut(s)	104, 460
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	1 cut(s)	460
AsuII	TTCGAA	1 cut(s)	800
AvaII	GGWCC	1 cut(s)	104
BamHI	GGATCC	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	849
Bbv12I	GWGCWC	1 cut(s)	569
BbvI	GCAGC	3 cut(s)	201, 526, 529
BccI	CCATC	3 cut(s)	26, 431, 517
BceAI	ACGGC	1 cut(s)	219
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	2 cut(s)	227, 745
BfaI	CTAG	2 cut(s)	305, 674
BfoI	RGCGCY	1 cut(s)	63
BisI	GCNGC	7 cut(s)	76, 170, 173, 190, 207, 540, 543
BlsI	GCNGC	7 cut(s)	77, 171, 174, 191, 208, 541, 544
Bme1390I	CCNGG	1 cut(s)	108
Bme18I	GGWCC	1 cut(s)	104
BmgT120I	GGNCC	2 cut(s)	104, 460
BmiI	GGNNCC	2 cut(s)	106, 112
BmrFI	CCNGG	1 cut(s)	108
BmrI	ACTGGG	1 cut(s)	764
BmsI	GCATC	1 cut(s)	746
BmuI	ACTGGG	1 cut(s)	764
BpiI	GAAGAC	1 cut(s)	849
BpmI	CTGGAG	2 cut(s)	75, 797
Bpu14I	TTCGAA	1 cut(s)	800
BpuEI	CTTGAG	2 cut(s)	25, 251
BpuMI	CCSGG	1 cut(s)	108
BsaI	GGTCTC	2 cut(s)	227, 745
BsaJI	CCNNGG	1 cut(s)	720
Bsc4I	CCNNNNNNNGG	3 cut(s)	159, 775, 900
Bse1I	ACTGG	2 cut(s)	349, 770
Bse3DI	GCAATG	4 cut(s)	294, 378, 501, 552
BseDI	CCNNGG	1 cut(s)	720
BseGI	GGATG	3 cut(s)	18, 217, 730
BseLI	CCNNNNNNNGG	3 cut(s)	159, 775, 900
BseMI	GCAATG	4 cut(s)	294, 378, 501, 552
BseMII	CTCAG	1 cut(s)	635
BseNI	ACTGG	2 cut(s)	349, 770
BseRI	GAGGAG	1 cut(s)	139
BseXI	GCAGC	3 cut(s)	201, 526, 529
Bsh1236I	CGCG	1 cut(s)	175
BshFI	GGCC	1 cut(s)	462
BsiHKAI	GWGCWC	1 cut(s)	569
BsiSI	CCGG	1 cut(s)	108
BslI	CCNNNNNNNGG	3 cut(s)	159, 775, 900
BsmAI	GTCTC	2 cut(s)	227, 745
BsnI	GGCC	1 cut(s)	462
Bso31I	GGTCTC	2 cut(s)	227, 745
Bsp119I	TTCGAA	1 cut(s)	800
Bsp1286I	GDGCHC	1 cut(s)	569
Bsp1407I	TGTACA	1 cut(s)	253
Bsp143I	GATC	8 cut(s)	110, 115, 176, 226, 450, 604, 670, 809
BspANI	GGCC	1 cut(s)	462
BspCNI	CTCAG	1 cut(s)	634
BspFNI	CGCG	1 cut(s)	175
BspLI	GGNNCC	2 cut(s)	106, 112
BspPI	GGATC	5 cut(s)	105, 110, 118, 171, 817
BspT104I	TTCGAA	1 cut(s)	800
BspTNI	GGTCTC	2 cut(s)	227, 745
BsrDI	GCAATG	4 cut(s)	294, 378, 501, 552
BsrGI	TGTACA	1 cut(s)	253
BsrI	ACTGG	2 cut(s)	349, 770
BssECI	CCNNGG	1 cut(s)	720
BssMI	GATC	8 cut(s)	110, 115, 176, 226, 450, 604, 670, 809
BssT1I	CCWWGG	1 cut(s)	720
Bst4CI	ACNGT	1 cut(s)	865
Bst6I	CTCTTC	2 cut(s)	187, 303
BstAPI	GCANNNNNTGC	1 cut(s)	12
BstAUI	TGTACA	1 cut(s)	253
BstBI	TTCGAA	1 cut(s)	800
BstC8I	GCNNGC	2 cut(s)	481, 889
BstDEI	CTNAG	1 cut(s)	621
BstF5I	GGATG	3 cut(s)	18, 217, 730
BstFNI	CGCG	1 cut(s)	175
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	2 cut(s)	17, 62
BstKTI	GATC	8 cut(s)	113, 118, 179, 229, 453, 607, 673, 812
BstMAI	GTCTC	2 cut(s)	227, 745
BstMBI	GATC	8 cut(s)	110, 115, 176, 226, 450, 604, 670, 809
BstMWI	GCNNNNNNNGC	5 cut(s)	12, 23, 57, 169, 195
BstSCI	CCNGG	1 cut(s)	106
BstUI	CGCG	1 cut(s)	175
BstV1I	GCAGC	3 cut(s)	201, 526, 529
BstV2I	GAAGAC	1 cut(s)	849
BstX2I	RGATCY	1 cut(s)	110
BstXI	CCANNNNNNTGG	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	110
BsuRI	GGCC	1 cut(s)	462
BtsCI	GGATG	3 cut(s)	18, 217, 730
Cac8I	GCNNGC	2 cut(s)	481, 889
CaiI	CAGNNNCTG	1 cut(s)	906
CfoI	GCGC	2 cut(s)	17, 62
Cfr13I	GGNCC	2 cut(s)	104, 460
CseI	GACGC	1 cut(s)	151
Csp6I	GTAC	2 cut(s)	82, 254
CviAII	CATG	3 cut(s)	257, 464, 877
CviJI	RGCY	9 cut(s)	51, 163, 406, 430, 462, 527, 620, 655, 891
CviKI_1	RGCY	9 cut(s)	51, 163, 406, 430, 462, 527, 620, 655, 891
CviQI	GTAC	2 cut(s)	82, 254
DdeI	CTNAG	1 cut(s)	621
DpnI	GATC	8 cut(s)	112, 117, 178, 228, 452, 606, 672, 811
DpnII	GATC	8 cut(s)	110, 115, 176, 226, 450, 604, 670, 809
Eam1104I	CTCTTC	2 cut(s)	187, 303
EarI	CTCTTC	2 cut(s)	187, 303
EciI	GGCGGA	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	720
Eco31I	GGTCTC	2 cut(s)	227, 745
Eco47I	GGWCC	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	582
EcoRI	GAATTC	1 cut(s)	354
EcoT14I	CCWWGG	1 cut(s)	720
ErhI	CCWWGG	1 cut(s)	720
FaeI	CATG	3 cut(s)	260, 467, 880
FalI	AAGNNNNNCTT	4 cut(s)	437, 469, 774, 806
FatI	CATG	3 cut(s)	256, 463, 876
FauI	CCCGC	3 cut(s)	80, 106, 130
Fnu4HI	GCNGC	7 cut(s)	76, 170, 173, 190, 207, 540, 543
FokI	GGATG	3 cut(s)	5, 224, 737
Fsp4HI	GCNGC	7 cut(s)	76, 170, 173, 190, 207, 540, 543
FspBI	CTAG	2 cut(s)	305, 674
GlaI	GCGC	2 cut(s)	16, 61
GluI	GCNGC	7 cut(s)	76, 170, 173, 190, 207, 540, 543
GsuI	CTGGAG	2 cut(s)	75, 797
HaeII	RGCGCY	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	462
HapII	CCGG	1 cut(s)	108
HgaI	GACGC	1 cut(s)	151
HhaI	GCGC	2 cut(s)	17, 62
Hin1II	CATG	3 cut(s)	260, 467, 880
Hin6I	GCGC	2 cut(s)	15, 60
HinP1I	GCGC	2 cut(s)	15, 60
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	2 cut(s)	757, 797
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	1 cut(s)	460
Hpy188I	TCNGA	6 cut(s)	115, 367, 394, 601, 624, 796
Hpy188III	TCNNGA	9 cut(s)	42, 66, 230, 305, 351, 422, 434, 674, 776
HpyAV	CCTTC	2 cut(s)	685, 726
HpyCH4III	ACNGT	1 cut(s)	865
HpyCH4IV	ACGT	1 cut(s)	578
HpyCH4V	TGCA	8 cut(s)	299, 383, 483, 494, 545, 638, 731, 887
HpyF10VI	GCNNNNNNNGC	5 cut(s)	12, 23, 57, 169, 195
HpyF3I	CTNAG	1 cut(s)	621
HpySE526I	ACGT	1 cut(s)	578
Hsp92II	CATG	3 cut(s)	260, 467, 880
HspAI	GCGC	2 cut(s)	15, 60
Kzo9I	GATC	8 cut(s)	110, 115, 176, 226, 450, 604, 670, 809
Lsp1109I	GCAGC	3 cut(s)	201, 526, 529
LweI	GCATC	1 cut(s)	746
MaeI	CTAG	2 cut(s)	305, 674
MaeII	ACGT	1 cut(s)	578
MaeIII	GTNAC	1 cut(s)	859
MalI	GATC	8 cut(s)	112, 117, 178, 228, 452, 606, 672, 811
MboI	GATC	8 cut(s)	110, 115, 176, 226, 450, 604, 670, 809
MboII	GAAGA	3 cut(s)	174, 320, 854
MflI	RGATCY	1 cut(s)	110
MhlI	GDGCHC	1 cut(s)	569
MluCI	AATT	1 cut(s)	354
MmeI	TCCRAC	1 cut(s)	683
MroXI	GAANNNNTTC	3 cut(s)	358, 429, 902
MseI	TTAA	5 cut(s)	56, 327, 341, 551, 913
MslI	CAYNNNNRTG	1 cut(s)	261
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	108
MvnI	CGCG	1 cut(s)	175
MwoI	GCNNNNNNNGC	5 cut(s)	12, 23, 57, 169, 195
NciI	CCSGG	1 cut(s)	108
NdeII	GATC	8 cut(s)	110, 115, 176, 226, 450, 604, 670, 809
NlaIII	CATG	3 cut(s)	260, 467, 880
NlaIV	GGNNCC	2 cut(s)	106, 112
NmuCI	GTSAC	1 cut(s)	859
NspV	TTCGAA	1 cut(s)	800
PdmI	GAANNNNTTC	3 cut(s)	358, 429, 902
PfeI	GAWTC	2 cut(s)	757, 797
PkrI	GCNGC	7 cut(s)	77, 171, 174, 191, 208, 541, 544
PsiI	TTATAA	1 cut(s)	321
PspN4I	GGNNCC	2 cut(s)	106, 112
PspPI	GGNCC	2 cut(s)	104, 460
PstNI	CAGNNNCTG	1 cut(s)	906
PsuI	RGATCY	1 cut(s)	110
RsaI	GTAC	2 cut(s)	83, 255
RsaNI	GTAC	2 cut(s)	82, 254
RseI	CAYNNNNRTG	1 cut(s)	261
SaqAI	TTAA	5 cut(s)	56, 327, 341, 551, 913
SatI	GCNGC	7 cut(s)	76, 170, 173, 190, 207, 540, 543
Sau3AI	GATC	8 cut(s)	110, 115, 176, 226, 450, 604, 670, 809
Sau96I	GGNCC	2 cut(s)	104, 460
ScrFI	CCNGG	1 cut(s)	108
SduI	GDGCHC	1 cut(s)	569
SetI	ASST	6 cut(s)	12, 265, 432, 450, 581, 905
SfaNI	GCATC	1 cut(s)	746
SfuI	TTCGAA	1 cut(s)	800
SinI	GGWCC	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	261
SmlI	CTYRAG	2 cut(s)	40, 230
SmoI	CTYRAG	2 cut(s)	40, 230
Sse9I	AATT	1 cut(s)	354
SspMI	CTAG	2 cut(s)	305, 674
StyD4I	CCNGG	1 cut(s)	106
StyI	CCWWGG	1 cut(s)	720
TaaI	ACNGT	1 cut(s)	865
TaiI	ACGT	1 cut(s)	581
TaqI	TCGA	1 cut(s)	800
TaqII	GACCGA	1 cut(s)	769
TasI	AATT	1 cut(s)	354
TatI	WGTACW	1 cut(s)	253
TauI	GCSGC	4 cut(s)	78, 172, 175, 209
TfiI	GAWTC	2 cut(s)	757, 797
Tru1I	TTAA	5 cut(s)	56, 327, 341, 551, 913
Tru9I	TTAA	5 cut(s)	56, 327, 341, 551, 913
TseFI	GTSAC	1 cut(s)	859
TseI	GCWGC	3 cut(s)	189, 539, 542
Tsp45I	GTSAC	1 cut(s)	859
TspDTI	ATGAA	2 cut(s)	347, 351
VpaK11BI	GGWCC	1 cut(s)	104
XapI	RAATTY	1 cut(s)	354
XbaI	TCTAGA	2 cut(s)	304, 673
XcmI	CCANNNNNNNNNTGG	1 cut(s)	470
XmnI	GAANNNNTTC	3 cut(s)	358, 429, 902
XspI	CTAG	2 cut(s)	305, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.