Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0007331

Physical Location & Seq

Genomic Coordinates Forward (+)

4989713 .. 4992788

Gene Structure 3076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1061600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGGCAACCTCTGCGCCATCCTCGCACCCAAACCCGCCAAGCGAAAGCCCATAAAGCGCCTCCCCAACCCGCCGCCGCAACCCAATTCCAGCAGCCGCTGGACCCGGGTGCGATCCTCCCGGAAAGAGAAGCTCGAGGACGCTCTAATCCAGGAACAAGCTCTCGCCGCCGCGATTCTGTTCCAGCAGCACCAGCAAAACGGCTCTCTGCCCTTTGATCGCTCCACCTCCCTCCGCTACCCCAACTCCAGCTCCAAAAAGGGCAGCAACGCCCTGCCCCGCAGCTCCAGCTCCCGCGCCAGGTCCCTCACCGACCCCCTCCTCCAGCCCCACCAGCTTGTTAATCAGGATGTTAATCTTGATGGTCTAGAAACCGACCATTTTGTCCTTGTACATGGAGGTGGCTTTGGTGCTTGGTGTTGGTATAAAACCATAGCACTTCTTGAGGAGGGTGGTTTTAAAGTTACCGCTGTAGACTTGACCGGCTCTGGAATTCATTCATCTGATACAAACAGCGTTACAAGTCTTTCACAATATGTGAAGCCTCTTTCTGATTTTCTTGAAAACCTTCCTGAGGGAAAAAAGGTAATATTGGTGGGTCATGATTTTGGTGGTGCATGTATATCATATGCAATGGAGTTATTTCCACATAAAGTCGCAAAGGCCATTTTTATTGCTGCGGCAATGTTGAAGAACGGACAAAGTACTCTTGAAATGTTCTCCCAACAGGCAAGTTCAGATGATCTTATGCGACAAGCTCAGGTATTTTTGTATGCAAATGGGAATGATCGGCCTCCGACTGCTATTGATCTAGATAAATCAATGTTGAAGGATTTATTATTCAACCAAAGTCCCAGCAAGGATGTCGCGTTGGCATCCGTCTCTATGAGGCCAATTCCATTTGCCCCGGTTCTGGAGAAGCTCTCATTAACCGACTTGAAATATGGATTGGTGAGGCGGTTTTATATACAGACATCAGAAGACAATGCCATACCCATCACGGTCCAGGAGAGCATGATAAAAGAAAGCCCTCCCGAACAGGTCCTCCGCTTGAAAGGCGCCGATCACTCTCCTTTTTTCTCAAAGCCTCAAGCCCTGCACAAGTTATTGCTGGAGATTTCGAAGATTTCATCTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

380

Amino Acids

41.71

Weight (kDa)

9.16

Isoelectric Point (pI)

51.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	127 - 363	1.8e-19	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	128 - 366	1.3e-22	Alpha/beta hydrolase family
Hydrolase_4	PF12146	128 - 235	7.9e-12	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29770 AT3G29770
fragaria_vesca	FvH4_6g46691 FvH4_6g46691 FvH4_6g46691 FvH4_6g46691 FvH4_6g46691 FvH4_6g46691
malus_domestica	MD09G1068600.v1.1 MD17G1061600.v1.1
prunus_persica	Prupe.3G252200_v2.0.a1
pyrus_communis	pycom12433g00090 pycom17g06140
rosa_chinensis	RchiOBHm_Chr2g0165571
rosa_laevigata	RLG00000021540
rosa_multiflora	Rmu_sc0016601.1_g000009 Rmu_sc0018426.1_g000004
rosa_roxburghii	Rroxscaffold_2G00085720
rosa_rugosa	Rorug02G0516200
rosa_samantha	Rh2AG582200 Rh2BG594400 Rh2CG564300 Rh2DG604300
rosa_wichuraiana	Rw2G048410 Rw2G048560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	383
AccB1I	GGYRCC	1 cut(s)	1058
AccI	GTMKAC	1 cut(s)	474
AccII	CGCG	3 cut(s)	173, 297, 869
AclWI	GGATC	1 cut(s)	108
AcsI	RAATTY	1 cut(s)	492
AcyI	GRCGYC	1 cut(s)	1059
AfaI	GTAC	2 cut(s)	393, 706
AfiI	CCNNNNNNNGG	3 cut(s)	300, 574, 913
AgsI	TTSAA	7 cut(s)	563, 691, 713, 829, 844, 940, 1054
AjnI	CCWGG	3 cut(s)	150, 299, 1005
AjuI	GAANNNNNNNTTGG	2 cut(s)	932, 964
AloI	GAACNNNNNNTCC	2 cut(s)	1029, 1061
AluBI	AGCT	8 cut(s)	133, 161, 252, 285, 291, 337, 758, 922
AluI	AGCT	8 cut(s)	133, 161, 252, 285, 291, 337, 758, 922
Alw26I	GTCTC	1 cut(s)	886
AlwI	GGATC	1 cut(s)	108
AlwNI	CAGNNNCTG	1 cut(s)	99
Ama87I	CYCGRG	2 cut(s)	105, 134
AoxI	GGCC	3 cut(s)	663, 791, 890
ApeKI	GCWGC	5 cut(s)	93, 187, 264, 282, 677
ApoI	RAATTY	1 cut(s)	492
Asp700I	GAANNNNTTC	2 cut(s)	496, 567
AspLEI	GCGC	4 cut(s)	17, 60, 299, 1061
AspS9I	GGNCC	4 cut(s)	102, 303, 1003, 1042
AsuC2I	CCSGG	4 cut(s)	106, 107, 121, 908
AsuHPI	GGTGA	2 cut(s)	301, 964
AsuII	TTCGAA	1 cut(s)	1121
AvaI	CYCGRG	2 cut(s)	105, 134
AvaII	GGWCC	4 cut(s)	102, 303, 1003, 1042
AxyI	CCTNAGG	1 cut(s)	573
BanI	GGYRCC	1 cut(s)	1058
BbsI	GAAGAC	1 cut(s)	987
BbvI	GCAGC	5 cut(s)	105, 199, 276, 294, 664
BccI	CCATC	3 cut(s)	26, 356, 1004
BceAI	ACGGC	1 cut(s)	217
BcgI	CGANNNNNNTGC	2 cut(s)	847, 881
BciT130I	CCWGG	3 cut(s)	152, 301, 1007
BcnI	CCSGG	4 cut(s)	106, 107, 121, 908
BcoDI	GTCTC	1 cut(s)	886
BfaI	CTAG	2 cut(s)	368, 812
BfmI	CTRYAG	1 cut(s)	471
BfoI	RGCGCY	2 cut(s)	61, 1062
BmcAI	AGTACT	1 cut(s)	706
Bme1390I	CCNGG	7 cut(s)	106, 107, 121, 152, 301, 908, 1007
Bme18I	GGWCC	4 cut(s)	102, 303, 1003, 1042
BmeT110I	CYCGRG	2 cut(s)	105, 134
BmgT120I	GGNCC	4 cut(s)	102, 303, 1003, 1042
BmiI	GGNNCC	3 cut(s)	104, 305, 1060
BmrFI	CCNGG	7 cut(s)	106, 107, 121, 152, 301, 908, 1007
BmsI	GCATC	1 cut(s)	884
BpiI	GAAGAC	1 cut(s)	987
BplI	GAGNNNNNCTC	2 cut(s)	908, 940
BpmI	CTGGAG	5 cut(s)	232, 271, 308, 935, 1133
Bpu10I	CCTNAGC	1 cut(s)	759
Bpu14I	TTCGAA	1 cut(s)	1121
BpuEI	CTTGAG	2 cut(s)	464, 1074
BpuMI	CCSGG	4 cut(s)	106, 107, 121, 908
BsaBI	GATNNNNATC	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	1059
BsaJI	CCNNGG	2 cut(s)	105, 906
BsaXI	ACNNNNNCTCC	6 cut(s)	230, 236, 260, 266, 1029, 1059
Bsc4I	CCNNNNNNNGG	3 cut(s)	300, 574, 913
Bse118I	RCCGGY	1 cut(s)	482
Bse21I	CCTNAGG	1 cut(s)	573
Bse3DI	GCAATG	2 cut(s)	639, 690
Bse8I	GATNNNNATC	1 cut(s)	354
BseBI	CCWGG	3 cut(s)	152, 301, 1007
BseDI	CCNNGG	2 cut(s)	105, 906
BseGI	GGATG	4 cut(s)	18, 355, 868, 875
BseJI	GATNNNNATC	1 cut(s)	354
BseLI	CCNNNNNNNGG	3 cut(s)	300, 574, 913
BseMI	GCAATG	2 cut(s)	639, 690
BseMII	CTCAG	2 cut(s)	564, 773
BseRI	GAGGAG	2 cut(s)	311, 461
BseXI	GCAGC	5 cut(s)	105, 199, 276, 294, 664
BseYI	CCCAGC	1 cut(s)	854
BsgI	GTGCAG	1 cut(s)	1082
Bsh1236I	CGCG	3 cut(s)	173, 297, 869
BshFI	GGCC	3 cut(s)	665, 793, 892
BshNI	GGYRCC	1 cut(s)	1058
BsiHKCI	CYCGRG	2 cut(s)	105, 134
BsiSI	CCGG	4 cut(s)	106, 121, 483, 908
BslFI	GGGAC	2 cut(s)	289, 837
BslI	CCNNNNNNNGG	3 cut(s)	300, 574, 913
BsmAI	GTCTC	1 cut(s)	886
BsmBI	CGTCTC	1 cut(s)	886
BsmFI	GGGAC	2 cut(s)	289, 837
BsnI	GGCC	3 cut(s)	665, 793, 892
BsoBI	CYCGRG	2 cut(s)	105, 134
Bsp119I	TTCGAA	1 cut(s)	1121
Bsp1407I	TGTACA	1 cut(s)	391
Bsp143I	GATC	6 cut(s)	113, 217, 742, 787, 808, 1063
BspANI	GGCC	3 cut(s)	665, 793, 892
BspCNI	CTCAG	2 cut(s)	565, 772
BspFNI	CGCG	3 cut(s)	173, 297, 869
BspHI	TCATGA	1 cut(s)	601
BspLI	GGNNCC	3 cut(s)	104, 305, 1060
BspPI	GGATC	1 cut(s)	108
BspT104I	TTCGAA	1 cut(s)	1121
BspT107I	GGYRCC	1 cut(s)	1058
BsrDI	GCAATG	2 cut(s)	639, 690
BsrFI	RCCGGY	1 cut(s)	482
BsrGI	TGTACA	1 cut(s)	391
BssAI	RCCGGY	1 cut(s)	482
BssECI	CCNNGG	2 cut(s)	105, 906
BssMI	GATC	6 cut(s)	113, 217, 742, 787, 808, 1063
BssNI	GRCGYC	1 cut(s)	1059
Bst2UI	CCWGG	3 cut(s)	152, 301, 1007
Bst4CI	ACNGT	1 cut(s)	1003
BstACI	GRCGYC	1 cut(s)	1059
BstAPI	GCANNNNNTGC	1 cut(s)	12
BstAUI	TGTACA	1 cut(s)	391
BstBI	TTCGAA	1 cut(s)	1121
BstDEI	CTNAG	3 cut(s)	573, 759, 1137
BstENI	CCTNNNNNAGG	1 cut(s)	572
BstF5I	GGATG	4 cut(s)	18, 355, 868, 875
BstFNI	CGCG	3 cut(s)	173, 297, 869
BstH2I	RGCGCY	2 cut(s)	61, 1062
BstHHI	GCGC	4 cut(s)	17, 60, 299, 1061
BstKTI	GATC	6 cut(s)	116, 220, 745, 790, 811, 1066
BstMAI	GTCTC	1 cut(s)	886
BstMBI	GATC	6 cut(s)	113, 217, 742, 787, 808, 1063
BstMWI	GCNNNNNNNGC	8 cut(s)	12, 23, 55, 167, 193, 288, 334, 1056
BstNI	CCWGG	3 cut(s)	152, 301, 1007
BstNSI	RCATGY	1 cut(s)	621
BstSCI	CCNGG	7 cut(s)	104, 105, 119, 150, 299, 906, 1005
BstSFI	CTRYAG	1 cut(s)	471
BstUI	CGCG	3 cut(s)	173, 297, 869
BstV1I	GCAGC	5 cut(s)	105, 199, 276, 294, 664
BstV2I	GAAGAC	1 cut(s)	987
Bsu36I	CCTNAGG	1 cut(s)	573
BsuRI	GGCC	3 cut(s)	665, 793, 892
BtsCI	GGATG	4 cut(s)	18, 355, 868, 875
CaiI	CAGNNNCTG	1 cut(s)	99
CciI	TCATGA	1 cut(s)	601
CfoI	GCGC	4 cut(s)	17, 60, 299, 1061
Cfr10I	RCCGGY	1 cut(s)	482
Cfr13I	GGNCC	4 cut(s)	102, 303, 1003, 1042
Cfr9I	CCCGGG	1 cut(s)	105
CseI	GACGC	1 cut(s)	149
Csp6I	GTAC	2 cut(s)	392, 705
CviAII	CATG	4 cut(s)	395, 602, 618, 1015
CviQI	GTAC	2 cut(s)	392, 705
DdeI	CTNAG	3 cut(s)	573, 759, 1137
DinI	GGCGCC	1 cut(s)	1060
DpnI	GATC	6 cut(s)	115, 219, 744, 789, 810, 1065
DpnII	GATC	6 cut(s)	113, 217, 742, 787, 808, 1063
DraI	TTTAAA	1 cut(s)	460
DrdI	GACNNNNNNGTC	1 cut(s)	383
DseDI	GACNNNNNNGTC	1 cut(s)	383
Eco47I	GGWCC	4 cut(s)	102, 303, 1003, 1042
Eco81I	CCTNAGG	1 cut(s)	573
Eco88I	CYCGRG	2 cut(s)	105, 134
EcoNI	CCTNNNNNAGG	1 cut(s)	572
EcoO109I	RGGNCCY	2 cut(s)	303, 1042
EcoRI	GAATTC	1 cut(s)	492
EcoRII	CCWGG	3 cut(s)	150, 299, 1005
EgeI	GGCGCC	1 cut(s)	1060
EheI	GGCGCC	1 cut(s)	1060
Esp3I	CGTCTC	1 cut(s)	886
FaeI	CATG	4 cut(s)	398, 605, 621, 1018
FaqI	GGGAC	2 cut(s)	289, 837
FatI	CATG	4 cut(s)	394, 601, 617, 1014
FauI	CCCGC	4 cut(s)	43, 78, 287, 302
FauNDI	CATATG	1 cut(s)	628
FblI	GTMKAC	1 cut(s)	474
FokI	GGATG	4 cut(s)	5, 362, 862, 875
FspBI	CTAG	2 cut(s)	368, 812
GlaI	GCGC	4 cut(s)	16, 59, 298, 1060
GsaI	CCCAGC	1 cut(s)	858
GsuI	CTGGAG	5 cut(s)	232, 271, 308, 935, 1133
HaeII	RGCGCY	2 cut(s)	61, 1062
HaeIII	GGCC	3 cut(s)	665, 793, 892
HapII	CCGG	4 cut(s)	106, 121, 483, 908
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	4 cut(s)	17, 60, 299, 1061
Hin1I	GRCGYC	1 cut(s)	1059
Hin1II	CATG	4 cut(s)	398, 605, 621, 1018
Hin6I	GCGC	4 cut(s)	15, 58, 297, 1059
HinP1I	GCGC	4 cut(s)	15, 58, 297, 1059
HinfI	GANTC	1 cut(s)	175
HpaII	CCGG	4 cut(s)	106, 121, 483, 908
HphI	GGTGA	2 cut(s)	301, 964
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	5 cut(s)	505, 553, 739, 798, 979
Hpy8I	GTNNAC	1 cut(s)	475
HpyAV	CCTTC	2 cut(s)	578, 823
HpyCH4III	ACNGT	1 cut(s)	1003
HpyCH4V	TGCA	4 cut(s)	617, 632, 776, 1099
HpyF10VI	GCNNNNNNNGC	8 cut(s)	12, 23, 55, 167, 193, 288, 334, 1056
HpyF3I	CTNAG	3 cut(s)	573, 759, 1137
Hsp92I	GRCGYC	1 cut(s)	1059
Hsp92II	CATG	4 cut(s)	398, 605, 621, 1018
HspAI	GCGC	4 cut(s)	15, 58, 297, 1059
KasI	GGCGCC	1 cut(s)	1058
Kzo9I	GATC	6 cut(s)	113, 217, 742, 787, 808, 1063
LmnI	GCTCC	4 cut(s)	227, 257, 290, 296
Lsp1109I	GCAGC	5 cut(s)	105, 199, 276, 294, 664
LweI	GCATC	1 cut(s)	884
MaeI	CTAG	2 cut(s)	368, 812
MaeIII	GTNAC	2 cut(s)	463, 517
MalI	GATC	6 cut(s)	115, 219, 744, 789, 810, 1065
MboI	GATC	6 cut(s)	113, 217, 742, 787, 808, 1063
MboII	GAAGA	3 cut(s)	703, 992, 1135
MluCI	AATT	3 cut(s)	85, 492, 894
Mly113I	GGCGCC	1 cut(s)	1059
MmeI	TCCRAC	1 cut(s)	821
MroXI	GAANNNNTTC	2 cut(s)	496, 567
MseI	TTAA	4 cut(s)	342, 354, 459, 929
MslI	CAYNNNNRTG	1 cut(s)	399
MspA1I	CMGCKG	2 cut(s)	99, 470
MspI	CCGG	4 cut(s)	106, 121, 483, 908
MspR9I	CCNGG	7 cut(s)	106, 107, 121, 152, 301, 908, 1007
MvaI	CCWGG	3 cut(s)	152, 301, 1007
MvnI	CGCG	3 cut(s)	173, 297, 869
MwoI	GCNNNNNNNGC	8 cut(s)	12, 23, 55, 167, 193, 288, 334, 1056
NarI	GGCGCC	1 cut(s)	1059
NciI	CCSGG	4 cut(s)	106, 107, 121, 908
NdeI	CATATG	1 cut(s)	628
NdeII	GATC	6 cut(s)	113, 217, 742, 787, 808, 1063
NlaIII	CATG	4 cut(s)	398, 605, 621, 1018
NlaIV	GGNNCC	3 cut(s)	104, 305, 1060
NspI	RCATGY	1 cut(s)	621
NspV	TTCGAA	1 cut(s)	1121
PaeR7I	CTCGAG	1 cut(s)	134
PagI	TCATGA	1 cut(s)	601
PdmI	GAANNNNTTC	2 cut(s)	496, 567
PfeI	GAWTC	1 cut(s)	175
PfoI	TCCNGGA	3 cut(s)	119, 150, 1005
PluTI	GGCGCC	1 cut(s)	1062
PpuMI	RGGWCCY	2 cut(s)	303, 1042
Psp5II	RGGWCCY	2 cut(s)	303, 1042
Psp6I	CCWGG	3 cut(s)	150, 299, 1005
PspFI	CCCAGC	1 cut(s)	854
PspGI	CCWGG	3 cut(s)	150, 299, 1005
PspN4I	GGNNCC	3 cut(s)	104, 305, 1060
PspPI	GGNCC	4 cut(s)	102, 303, 1003, 1042
PspPPI	RGGWCCY	2 cut(s)	303, 1042
PspXI	VCTCGAGB	1 cut(s)	134
PstNI	CAGNNNCTG	1 cut(s)	99
RsaI	GTAC	2 cut(s)	393, 706
RsaNI	GTAC	2 cut(s)	392, 705
RseI	CAYNNNNRTG	1 cut(s)	399
SaqAI	TTAA	4 cut(s)	342, 354, 459, 929
Sau3AI	GATC	6 cut(s)	113, 217, 742, 787, 808, 1063
Sau96I	GGNCC	4 cut(s)	102, 303, 1003, 1042
ScaI	AGTACT	1 cut(s)	706
ScrFI	CCNGG	7 cut(s)	106, 107, 121, 152, 301, 908, 1007
SfaNI	GCATC	1 cut(s)	884
SfcI	CTRYAG	1 cut(s)	471
SfoI	GGCGCC	1 cut(s)	1060
Sfr274I	CTCGAG	1 cut(s)	134
SfuI	TTCGAA	1 cut(s)	1121
SinI	GGWCC	4 cut(s)	102, 303, 1003, 1042
SlaI	CTCGAG	1 cut(s)	134
SmaI	CCCGGG	1 cut(s)	107
SmiMI	CAYNNNNRTG	1 cut(s)	399
SmlI	CTYRAG	3 cut(s)	134, 443, 1089
SmoI	CTYRAG	3 cut(s)	134, 443, 1089
Sse9I	AATT	3 cut(s)	85, 492, 894
SspDI	GGCGCC	1 cut(s)	1058
SspI	AATATT	1 cut(s)	591
SspMI	CTAG	2 cut(s)	368, 812
StyD4I	CCNGG	7 cut(s)	104, 105, 119, 150, 299, 906, 1005
TaaI	ACNGT	1 cut(s)	1003
TaqI	TCGA	2 cut(s)	135, 1121
TasI	AATT	3 cut(s)	85, 492, 894
TatI	WGTACW	2 cut(s)	391, 704
TauI	GCSGC	6 cut(s)	76, 79, 99, 170, 173, 683
TfiI	GAWTC	1 cut(s)	175
Tru1I	TTAA	4 cut(s)	342, 354, 459, 929
Tru9I	TTAA	4 cut(s)	342, 354, 459, 929
TseI	GCWGC	5 cut(s)	93, 187, 264, 282, 677
TspDTI	ATGAA	3 cut(s)	485, 489, 1119
TspGWI	ACGGA	2 cut(s)	711, 868
TspMI	CCCGGG	1 cut(s)	105
VpaK11BI	GGWCC	4 cut(s)	102, 303, 1003, 1042
XagI	CCTNNNNNAGG	1 cut(s)	572
XapI	RAATTY	1 cut(s)	492
XbaI	TCTAGA	2 cut(s)	367, 811
XceI	RCATGY	1 cut(s)	621
XhoI	CTCGAG	1 cut(s)	134
XmaI	CCCGGG	1 cut(s)	105
XmiI	GTMKAC	1 cut(s)	474
XmnI	GAANNNNTTC	2 cut(s)	496, 567
XspI	CTAG	2 cut(s)	368, 812
ZrmI	AGTACT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.