Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007331

Physical Location & Seq

Genomic Coordinates Reverse (-)

80471587 .. 80475305

Gene Structure 3719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53352

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGGCAACCTCTGCGCCATCCTTGCCCCCAAACCCCCCCTCAAGAAAAAGCCCATTAAGCGCCTCCCGAACCCGCCGCCCGTACCCAACTCCAGCACCCGCTGGACCCGGATCCGATCCTCCCGCAAACAAAACCCGGATGACGCTCTCCTCCAAGAACAGGCTCTCGCCGCCGCGATCCTCTTCCAGCAGCACCAGCAAAACGGCGGCGGTTCTTTGCCGTTTGATCGCTCCACATCCCTGCGCTACCCCAATAATAACAACTCCAGCTCCAAGAAGGGCAACAGCAACGTCTTGCCACGTAGCTCCAGCACTCGGGCTCGGTCCTTAACCGACCCGCTGCTCCAGCCGCACCAGCTTGTGAACCAGTACGATGTAAAGATTGATGATCTTGAGACCAACCACTTTGTTCTTGTACATGGAGGCGGGTTTGGTGCTTGGTGTTGGTATAAAACCATTGCACTTCTAGAAGAGAGTGGTTATAAAGTTAATGCCATAGACTTAACTGGTTCTGGAATTCATTCATCTGATACAAACACCATTGCAAGTCTTTCAGAATATGTGAAGCCTCTTACTGATTTTCTTGAAAAGCTTCCTGATGGAAAAAAGGTGATCTTGGTGGGCCATGATTTTGGTGGCGCGTGCATATCGTATGCAATGGAGTTGTTTCCATCTAAAGTTGCGAAAGCCATTTTTCTTGCTGCTGCAATGTTGAAAAATGGACAGAGCACCCTTGATACGTTCTCCCAACAGGCAACTTCAGATGATCTTATGCGACAGGCTCAGATATTTTTGTATGCAAATGGGAATAATCAGCCTCCAACTGCTATTGATCTAGATAAATCAATGTTGAAGGATTTGTTATTCAACCAAAGTCCTTCCAAGGATGTTGCATTGGCATCTGTTTCAATGAGACCGATTCCATTTGCCCCAGTCCTGGAGAAAGTTTCACTTTCTGATTCGAAATATGGATCAGTTAGGCGGTTTTATATAGAAACATTAGAAGACAATGCCATACCCGTCACAGTCCAAGAGAGCATGATAAATGCAAGCCCCCCTGAACAGGTTCTGCGGTTAAAAGGCGCTGATCACTCACCTTTCTTCTCAAAGCCTCAAGCACTGCACAAGTTATTGGTAGAGATCTCAAAGATTTCTTCACCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

387

Amino Acids

42.45

Weight (kDa)

9.13

Isoelectric Point (pI)

50.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	134 - 371	2.1e-19	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	136 - 374	1.1e-20	Alpha/beta hydrolase family
Hydrolase_4	PF12146	136 - 242	1.3e-11	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29770 AT3G29770
fragaria_vesca	FvH4_6g46691 FvH4_6g46691 FvH4_6g46691 FvH4_6g46691 FvH4_6g46691 FvH4_6g46691
malus_domestica	MD09G1068600.v1.1 MD17G1061600.v1.1
prunus_persica	Prupe.3G252200_v2.0.a1
pyrus_communis	pycom12433g00090 pycom17g06140
rosa_chinensis	RchiOBHm_Chr2g0165571
rosa_laevigata	RLG00000021540
rosa_multiflora	Rmu_sc0016601.1_g000009 Rmu_sc0018426.1_g000004
rosa_roxburghii	Rroxscaffold_2G00085720
rosa_rugosa	Rorug02G0516200
rosa_samantha	Rh2AG582200 Rh2BG594400 Rh2CG564300 Rh2DG604300
rosa_wichuraiana	Rw2G048410 Rw2G048560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	483
AccII	CGCG	2 cut(s)	176, 641
AclWI	GGATC	5 cut(s)	106, 111, 119, 172, 979
AcsI	RAATTY	1 cut(s)	516
AcuI	CTGAAG	1 cut(s)	744
AfaI	GTAC	3 cut(s)	84, 371, 417
AfiI	CCNNNNNNNGG	4 cut(s)	160, 315, 937, 1063
AgsI	TTSAA	5 cut(s)	587, 715, 853, 868, 909
AjnI	CCWGG	1 cut(s)	936
AluBI	AGCT	4 cut(s)	270, 306, 358, 592
AluI	AGCT	4 cut(s)	270, 306, 358, 592
Alw21I	GWGCWC	1 cut(s)	731
Alw26I	GTCTC	2 cut(s)	389, 907
AlwI	GGATC	5 cut(s)	106, 111, 119, 172, 979
AlwNI	CAGNNNCTG	1 cut(s)	1069
Ama87I	CYCGRG	1 cut(s)	315
AoxI	GGCC	1 cut(s)	622
ApeKI	GCWGC	4 cut(s)	190, 340, 701, 704
ApoI	RAATTY	1 cut(s)	516
Asp700I	GAANNNNTTC	3 cut(s)	520, 591, 1065
AspLEI	GCGC	5 cut(s)	17, 63, 246, 641, 1085
AspS9I	GGNCC	3 cut(s)	105, 324, 622
AsuC2I	CCSGG	2 cut(s)	109, 137
AsuHPI	GGTGA	3 cut(s)	622, 1086, 1149
AsuII	TTCGAA	1 cut(s)	962
AvaI	CYCGRG	1 cut(s)	315
AvaII	GGWCC	2 cut(s)	105, 324
BamHI	GGATCC	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	322
BbsI	GAAGAC	1 cut(s)	1011
Bbv12I	GWGCWC	1 cut(s)	731
BbvI	GCAGC	4 cut(s)	202, 327, 688, 691
BccI	CCATC	3 cut(s)	26, 593, 679
BceAI	ACGGC	2 cut(s)	205, 220
BciT130I	CCWGG	1 cut(s)	938
BclI	TGATCA	1 cut(s)	1087
BcnI	CCSGG	2 cut(s)	109, 137
BcoDI	GTCTC	2 cut(s)	389, 907
BfaI	CTAG	2 cut(s)	467, 836
BfoI	RGCGCY	2 cut(s)	64, 1086
BglII	AGATCT	1 cut(s)	1140
BisI	GCNGC	9 cut(s)	77, 171, 174, 191, 208, 341, 350, 702, 705
BlsI	GCNGC	9 cut(s)	78, 172, 175, 192, 209, 342, 351, 703, 706
Bme1390I	CCNGG	3 cut(s)	109, 137, 938
Bme18I	GGWCC	2 cut(s)	105, 324
BmeT110I	CYCGRG	1 cut(s)	315
BmgT120I	GGNCC	3 cut(s)	105, 324, 622
BmiI	GGNNCC	2 cut(s)	107, 113
BmrFI	CCNGG	3 cut(s)	109, 137, 938
BmrI	ACTGGG	1 cut(s)	926
BmsI	GCATC	1 cut(s)	908
BmuI	ACTGGG	1 cut(s)	926
BpiI	GAAGAC	1 cut(s)	1011
BpmI	CTGGAG	5 cut(s)	76, 250, 292, 329, 959
Bpu14I	TTCGAA	1 cut(s)	962
BpuEI	CTTGAG	3 cut(s)	26, 413, 1098
BpuMI	CCSGG	2 cut(s)	109, 137
BsaAI	YACGTR	1 cut(s)	302
BsaI	GGTCTC	2 cut(s)	389, 907
BsaJI	CCNNGG	1 cut(s)	882
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	4 cut(s)	160, 315, 937, 1063
Bse1I	ACTGG	3 cut(s)	367, 511, 932
Bse3DI	GCAATG	4 cut(s)	456, 540, 663, 714
BseBI	CCWGG	1 cut(s)	938
BseDI	CCNNGG	1 cut(s)	882
BseGI	GGATG	4 cut(s)	18, 145, 236, 892
BseLI	CCNNNNNNNGG	4 cut(s)	160, 315, 937, 1063
BseMI	GCAATG	4 cut(s)	456, 540, 663, 714
BseMII	CTCAG	1 cut(s)	797
BseNI	ACTGG	3 cut(s)	367, 511, 932
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	4 cut(s)	202, 327, 688, 691
BsgI	GTGCAG	1 cut(s)	1106
Bsh1236I	CGCG	2 cut(s)	176, 641
BshFI	GGCC	1 cut(s)	624
BsiHKAI	GWGCWC	1 cut(s)	731
BsiHKCI	CYCGRG	1 cut(s)	315
BsiSI	CCGG	2 cut(s)	109, 137
BslI	CCNNNNNNNGG	4 cut(s)	160, 315, 937, 1063
BsmAI	GTCTC	2 cut(s)	389, 907
BsnI	GGCC	1 cut(s)	624
Bso31I	GGTCTC	2 cut(s)	389, 907
BsoBI	CYCGRG	1 cut(s)	315
Bsp119I	TTCGAA	1 cut(s)	962
Bsp1286I	GDGCHC	2 cut(s)	322, 731
Bsp1407I	TGTACA	1 cut(s)	415
BspANI	GGCC	1 cut(s)	624
BspCNI	CTCAG	1 cut(s)	796
BspFNI	CGCG	2 cut(s)	176, 641
BspLI	GGNNCC	2 cut(s)	107, 113
BspPI	GGATC	5 cut(s)	106, 111, 119, 172, 979
BspT104I	TTCGAA	1 cut(s)	962
BspTNI	GGTCTC	2 cut(s)	389, 907
BsrDI	GCAATG	4 cut(s)	456, 540, 663, 714
BsrGI	TGTACA	1 cut(s)	415
BsrI	ACTGG	3 cut(s)	367, 511, 932
BssECI	CCNNGG	1 cut(s)	882
BssT1I	CCWWGG	1 cut(s)	882
Bst2UI	CCWGG	1 cut(s)	938
Bst4CI	ACNGT	2 cut(s)	1027, 1161
Bst6I	CTCTTC	2 cut(s)	188, 465
BstAPI	GCANNNNNTGC	1 cut(s)	12
BstAUI	TGTACA	1 cut(s)	415
BstBAI	YACGTR	1 cut(s)	302
BstBI	TTCGAA	1 cut(s)	962
BstC8I	GCNNGC	2 cut(s)	643, 1051
BstDEI	CTNAG	1 cut(s)	783
BstF5I	GGATG	4 cut(s)	18, 145, 236, 892
BstFNI	CGCG	2 cut(s)	176, 641
BstH2I	RGCGCY	2 cut(s)	64, 1086
BstHHI	GCGC	5 cut(s)	17, 63, 246, 641, 1085
BstMAI	GTCTC	2 cut(s)	389, 907
BstMWI	GCNNNNNNNGC	8 cut(s)	12, 23, 58, 170, 196, 346, 349, 355
BstNI	CCWGG	1 cut(s)	938
BstSCI	CCNGG	3 cut(s)	107, 135, 936
BstUI	CGCG	2 cut(s)	176, 641
BstV1I	GCAGC	4 cut(s)	202, 327, 688, 691
BstV2I	GAAGAC	1 cut(s)	1011
BstX2I	RGATCY	2 cut(s)	111, 1140
BstXI	CCANNNNNNTGG	1 cut(s)	632
BstYI	RGATCY	2 cut(s)	111, 1140
BsuRI	GGCC	1 cut(s)	624
BtsCI	GGATG	4 cut(s)	18, 145, 236, 892
BtsI	GCAGTG	1 cut(s)	1118
BtsIMutI	CAGTG	1 cut(s)	1118
Cac8I	GCNNGC	2 cut(s)	643, 1051
CaiI	CAGNNNCTG	1 cut(s)	1069
CfoI	GCGC	5 cut(s)	17, 63, 246, 641, 1085
Cfr13I	GGNCC	3 cut(s)	105, 324, 622
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	3 cut(s)	83, 370, 416
CviAII	CATG	3 cut(s)	419, 626, 1039
CviQI	GTAC	3 cut(s)	83, 370, 416
DdeI	CTNAG	1 cut(s)	783
Eam1104I	CTCTTC	2 cut(s)	188, 465
EarI	CTCTTC	2 cut(s)	188, 465
Eco130I	CCWWGG	1 cut(s)	882
Eco24I	GRGCYC	1 cut(s)	322
Eco31I	GGTCTC	2 cut(s)	389, 907
Eco47I	GGWCC	2 cut(s)	105, 324
Eco57I	CTGAAG	1 cut(s)	744
Eco88I	CYCGRG	1 cut(s)	315
EcoRI	GAATTC	1 cut(s)	516
EcoRII	CCWGG	1 cut(s)	936
EcoT14I	CCWWGG	1 cut(s)	882
EcoT38I	GRGCYC	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	882
FaeI	CATG	3 cut(s)	422, 629, 1042
FalI	AAGNNNNNCTT	4 cut(s)	599, 631, 936, 968
FatI	CATG	3 cut(s)	418, 625, 1038
FauI	CCCGC	5 cut(s)	81, 107, 131, 345, 419
FbaI	TGATCA	1 cut(s)	1087
Fnu4HI	GCNGC	9 cut(s)	77, 171, 174, 191, 208, 341, 350, 702, 705
FokI	GGATG	4 cut(s)	5, 152, 223, 899
FriOI	GRGCYC	1 cut(s)	322
Fsp4HI	GCNGC	9 cut(s)	77, 171, 174, 191, 208, 341, 350, 702, 705
FspBI	CTAG	2 cut(s)	467, 836
GlaI	GCGC	5 cut(s)	16, 62, 245, 640, 1084
GluI	GCNGC	9 cut(s)	77, 171, 174, 191, 208, 341, 350, 702, 705
GsuI	CTGGAG	5 cut(s)	76, 250, 292, 329, 959
HaeII	RGCGCY	2 cut(s)	64, 1086
HaeIII	GGCC	1 cut(s)	624
HapII	CCGG	2 cut(s)	109, 137
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	5 cut(s)	17, 63, 246, 641, 1085
Hin1II	CATG	3 cut(s)	422, 629, 1042
Hin6I	GCGC	5 cut(s)	15, 61, 244, 639, 1083
HinP1I	GCGC	5 cut(s)	15, 61, 244, 639, 1083
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	2 cut(s)	919, 959
HpaII	CCGG	2 cut(s)	109, 137
HphI	GGTGA	3 cut(s)	622, 1086, 1149
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	6 cut(s)	116, 529, 556, 763, 786, 958
Hpy188III	TCNNGA	8 cut(s)	43, 67, 392, 467, 513, 584, 596, 836
Hpy8I	GTNNAC	1 cut(s)	364
HpyAV	CCTTC	3 cut(s)	271, 847, 888
HpyCH4III	ACNGT	2 cut(s)	1027, 1161
HpyCH4IV	ACGT	3 cut(s)	291, 301, 740
HpyCH4V	TGCA	9 cut(s)	461, 545, 645, 656, 707, 800, 893, 1049, 1123
HpyF10VI	GCNNNNNNNGC	8 cut(s)	12, 23, 58, 170, 196, 346, 349, 355
HpyF3I	CTNAG	1 cut(s)	783
HpySE526I	ACGT	3 cut(s)	291, 301, 740
Hsp92II	CATG	3 cut(s)	422, 629, 1042
HspAI	GCGC	5 cut(s)	15, 61, 244, 639, 1083
Ksp22I	TGATCA	1 cut(s)	1087
LmnI	GCTCC	4 cut(s)	236, 275, 311, 348
Lsp1109I	GCAGC	4 cut(s)	202, 327, 688, 691
LweI	GCATC	1 cut(s)	908
MaeI	CTAG	2 cut(s)	467, 836
MaeII	ACGT	3 cut(s)	291, 301, 740
MaeIII	GTNAC	1 cut(s)	1021
MboII	GAAGA	5 cut(s)	175, 482, 1016, 1093, 1146
MflI	RGATCY	2 cut(s)	111, 1140
MhlI	GDGCHC	2 cut(s)	322, 731
MluCI	AATT	1 cut(s)	516
MmeI	TCCRAC	1 cut(s)	845
MroXI	GAANNNNTTC	3 cut(s)	520, 591, 1065
MseI	TTAA	5 cut(s)	57, 329, 489, 503, 1076
MspA1I	CMGCKG	2 cut(s)	102, 340
MspI	CCGG	2 cut(s)	109, 137
MspR9I	CCNGG	3 cut(s)	109, 137, 938
MvaI	CCWGG	1 cut(s)	938
MvnI	CGCG	2 cut(s)	176, 641
MwoI	GCNNNNNNNGC	8 cut(s)	12, 23, 58, 170, 196, 346, 349, 355
NciI	CCSGG	2 cut(s)	109, 137
NlaIII	CATG	3 cut(s)	422, 629, 1042
NlaIV	GGNNCC	2 cut(s)	107, 113
NmuCI	GTSAC	1 cut(s)	1021
NspV	TTCGAA	1 cut(s)	962
PdmI	GAANNNNTTC	3 cut(s)	520, 591, 1065
PfeI	GAWTC	2 cut(s)	919, 959
PfoI	TCCNGGA	1 cut(s)	936
PkrI	GCNGC	9 cut(s)	78, 172, 175, 192, 209, 342, 351, 703, 706
Ppu21I	YACGTR	1 cut(s)	302
PsiI	TTATAA	1 cut(s)	483
Psp6I	CCWGG	1 cut(s)	936
PspGI	CCWGG	1 cut(s)	936
PspN4I	GGNNCC	2 cut(s)	107, 113
PspPI	GGNCC	3 cut(s)	105, 324, 622
PstNI	CAGNNNCTG	1 cut(s)	1069
PsuI	RGATCY	2 cut(s)	111, 1140
RsaI	GTAC	3 cut(s)	84, 371, 417
RsaNI	GTAC	3 cut(s)	83, 370, 416
SaqAI	TTAA	5 cut(s)	57, 329, 489, 503, 1076
SatI	GCNGC	9 cut(s)	77, 171, 174, 191, 208, 341, 350, 702, 705
Sau96I	GGNCC	3 cut(s)	105, 324, 622
ScrFI	CCNGG	3 cut(s)	109, 137, 938
SduI	GDGCHC	2 cut(s)	322, 731
SfaNI	GCATC	1 cut(s)	908
SfuI	TTCGAA	1 cut(s)	962
SinI	GGWCC	2 cut(s)	105, 324
SmlI	CTYRAG	3 cut(s)	41, 392, 1113
SmoI	CTYRAG	3 cut(s)	41, 392, 1113
Sse9I	AATT	1 cut(s)	516
SspMI	CTAG	2 cut(s)	467, 836
StyD4I	CCNGG	3 cut(s)	107, 135, 936
StyI	CCWWGG	1 cut(s)	882
TaaI	ACNGT	2 cut(s)	1027, 1161
TaiI	ACGT	3 cut(s)	294, 304, 743
TaqI	TCGA	1 cut(s)	962
TaqII	GACCGA	2 cut(s)	312, 931
TasI	AATT	1 cut(s)	516
TatI	WGTACW	1 cut(s)	415
TauI	GCSGC	5 cut(s)	79, 173, 176, 210, 352
TfiI	GAWTC	2 cut(s)	919, 959
Tru1I	TTAA	5 cut(s)	57, 329, 489, 503, 1076
Tru9I	TTAA	5 cut(s)	57, 329, 489, 503, 1076
TscAI	CASTG	1 cut(s)	1125
TseFI	GTSAC	1 cut(s)	1021
TseI	GCWGC	4 cut(s)	190, 340, 701, 704
Tsp45I	GTSAC	1 cut(s)	1021
TspDTI	ATGAA	2 cut(s)	509, 513
TspRI	CASTG	1 cut(s)	1125
VpaK11BI	GGWCC	2 cut(s)	105, 324
XapI	RAATTY	1 cut(s)	516
XbaI	TCTAGA	2 cut(s)	466, 835
XcmI	CCANNNNNNNNNTGG	1 cut(s)	632
XmnI	GAANNNNTTC	3 cut(s)	520, 591, 1065
XspI	CTAG	2 cut(s)	467, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.