Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011636

Physical Location & Seq

Genomic Coordinates Forward (+)

14724103 .. 14728327

Gene Structure 4225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G42640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2847 bp

ATGGCGACTGAATTCTCGTGGGATGAAATCAAGAAAGAAAATGTGGACCTTGAGCGGATCCCTGTGGAAGAAGTGTTTGAGCAGCTGAAATGCTCAAAAGAAGGTTTGTCCAGCGATGAAGGTGCTAAAAGGCTTGAAATATTTGGGGCAAACAAGCTTGAAGAGAAATCAGAGAACAAGTTTTTGAAATTCTTGGGGTTCATGTGGAATCCTCTCTCATGGGTTATGGAGTCTGCTGCAATCATGGCTATTGTTTTAGCTAATGGAGGAGGAAAGGCGCCGGATTGGCAAGATTTTATCGGTATTATGGTGTTGCTTATCATCAACTCCACCATAAGTTTCATCGAGGAGAACAATGCTGGCAATGCCGCTGCTGCTCTCATGGCAAATCTTGCACCAAAGACTAAGGTGTTGAGAGATGGTAAATGGGGGGAGCAAGAGGCTTCAATCTTGGTTCCGGGTGATTTGATAAGCATCAAATTGGGTGACATTGTTCCTGCTGATGCTCGTCTCCTCGAAGGAGATCCTTTAAAAATTGACCAATCTGCTCTTACTGGTGAATCCCTTCCAACCACCAAACACCCAGGAGATGAAGTATTCTCTGGCTCAACCTGCAAGCAAGGTGAGATTGAGGCTGTTGTCATTGCCACGGGTGTCCACACCTTTTTTGGCAAGGCTGCTCATCTTGTTGACAGTACCAACAATGTTGGCCATTTCCAAAAGGTTTTGACATCAATTGGTAACTTCTGTATATGCTCAATTGGATTGGGGATGTTGATTGAGATATTGATTATGTACCCTATCCAACACCGCACATACAGAGATGGTATTGATAATCTATTGGTGCTTTTGATCGGAGGAATCCCAATCGCCATGCCAACAGTTTTGTCTGTAACAATGGCTATTGGATCACATAGACTCTCTCAACAAGGTGCCATCACCAAGAGGATGACTGCAATTGAAGAAATGGCTGGAATGGATGTTCTCTGCAGTGATAAGACTGGAACTCTAACCCTTAACAAGCTCTCTGTCGACAAGTCCTTAATTGAAGTGTTCCCAAAGAACATGGATAGTGACTCAGTTGTATTGATGGCTGCAAGAGCTTCCAGGATTGAAAACCAAGATGCCATTGATGCTTCCATCGTCGGAATGTTGGGTGATCCTAAAGAGGCAAGAGCAGGAATCACAGAGGTGCATTTCTTGCCCTTTAACCCTGTAGATAAACGTACAGCGATCACATACATCGATGAAAGCGGAGACTGGCATCGGAGCAGTAAAGGAGCTCCTGAGCAGATCATTGAACTCTGCAATCTCCAAGGAGAGACTAAAAGAAAAGCACACGAAGTTATCGATGGTTTTGCTGAACGTGGGCTTCGTTCTCTTGGTGTTGCTCAACAGACTGTGCCTGAGAAGACTAAGGAAAGTGATGGTAGTCCATGGGAGTTCGTTGGTCTGTTGCCACTCTTTGACCCCCCAAGACATGACAGTGCGGAAACTATTAGACGAGCCCTTGAGCTTGGTGTCAATGTTAAGATGATTACCGGTGACCAACTTGCCATCGGTATTGAGACTGGTCGTAGGCTTGGCATGGGAACCAACATGTACCCATCCACTTCACTCCTTGGCAATTCAAAGGATGAATCATTAGTTGGCATCCCTATCGATGAGCTCATTGAGAAAGCTGATGGATTTGCTGGAGTCTTCCCTGAGCACAAGTATGAGATCGTAAAGAAGCTACAAGAGAGGAAGCACATTTGTGGGATGACTGGAGATGGTGTAAACGATGCTCCAGCTTTGAAGAAAGCGGATATTGGAATTGCAGTGGCAGATGCTACTGATGCGGCAAGAAGCGCCTCAGACATTGTTCTAACAGAACCAGGACTAAGCGTGATAATAAGTGCCGTATTGACAAGTCGCGCTATCTTCCAGAGGATGAAGAACTACACAATCTACGCTGTTTCCATCACTATCCGTATTGTTTTGGGATTCATGCTTGTTGCTTTAATCTGGAGATTTGATTTCGCACCTTTCATGGTCTTGATTATCGCAATCCTAAATGATGGAACCATCATGACTATCTCTAAGGACAGGGTTAAACCTTCCCCGGTGCCAGATTCTTGGAAGCTCAATGAGATTTTCGCCACTGGCGTTGTTCTAGGAACCTACATGGCTCTTACCACTGTACTCTTTTTCTGGCTAGCTCATGACACAGACTTCTTCAGCAAAACATTTGGAGTTAGGTCCATACAAGGGAACGAAGAAGAACTTATGGCAGCTTTGTATCTTCAAGTGAGCATCATAAGTCAAGCACTTATCTTTGTAACCAGATCAAGGAGCTGGTCATTTGTTGAACGACCTGGGTTTTTGCTCCTAATAGCCTTTGTTATAGCACAATTGGTGGCTACATTGATCGCTGTGTATGCAAACTGGGGATTCGCAAGAATCGTCGGTTGTGGATGGGGATGGGCTGGAGGTATATGGGTATACAGTATCATTACCTACATTCCTCTTGATATTCTCAAGTTCATCATCCGTTACGCTCTCACTGGCAAGGCTTGGGATAACATGATCAACCAGAAAACTGCGTTCACAACTAAGAAAGATTATGGAAAAGGAGAGAGGGAGGCTCAGTGGGCACTAGCTCAACGTACACTCCATGGTCTACCACCTCCAGAAGCAATGTTCAACGACAATAAGAACGAGCTCTCTGAAATAGCAGAGCAGGCCAAAAGGCGTGCCGAAGTTGCGAGGCTGAGAGAGCTTCACACTCTAAAGGGTCACGTTGAATCTGTAGTGAAGCTCAAGGGGCTTGACATTGATACCATTCAACAACACTACACTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008553 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0034220 GO:0036442 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

948

Amino Acids

104.13

Weight (kDa)

5.53

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	19 - 82	4.3e-14	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	131 - 230	1e-29	P-type ATPase actuator domain
Hydrolase	PF00702	326 - 603	1.6e-12	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07560 AT3G42640
fragaria_vesca	FvH4_1g01450 FvH4_1g01450
malus_domestica	MD02G1011600.v1.1
prunus_persica	Prupe.7G258000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0086371
rosa_laevigata	RLG00000015753
rosa_multiflora	Rmu_co8318751.1_g000001 Rmu_sc0003572.1_g000001 Rmu_sc0005127.1_g000010
rosa_roxburghii	Rroxscaffold_2G00154660
rosa_rugosa	Rorug01G0466900 Rorug01G0467000
rosa_samantha	Rh2AG017100 Rh2BG016900 Rh2CG017900 Rh2DG018600
rosa_wichuraiana	Rw2G001450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	620
AccB1I	GGYRCC	3 cut(s)	277, 932, 2107
AccBSI	CCGCTC	1 cut(s)	55
AccI	GTMKAC	3 cut(s)	1032, 2484, 2662
AccII	CGCG	1 cut(s)	1917
AciI	CCGC	7 cut(s)	55, 369, 811, 1254, 1490, 1805, 1841
AclWI	GGATC	5 cut(s)	52, 65, 518, 916, 1154
AcoI	YGGCCR	1 cut(s)	709
AcsI	RAATTY	2 cut(s)	11, 188
AcuI	CTGAAG	1 cut(s)	2203
AcyI	GRCGYC	1 cut(s)	278
AfaI	GTAC	6 cut(s)	697, 797, 1228, 1604, 2184, 2650
AfiI	CCNNNNNNNGG	2 cut(s)	2250, 2331
AflIII	ACRYGT	1 cut(s)	1599
AgeI	ACCGGT	1 cut(s)	1541
AjnI	CCWGG	4 cut(s)	583, 1106, 1876, 2356
AjuI	GAANNNNNNNTTGG	2 cut(s)	1632, 1664
AleI	CACNNNNGTG	2 cut(s)	1190, 1755
AloI	GAACNNNNNNTCC	2 cut(s)	966, 998
Alw21I	GWGCWC	4 cut(s)	1285, 1671, 1713, 2706
Alw26I	GTCTC	4 cut(s)	515, 1251, 1316, 1562
AlwI	GGATC	5 cut(s)	52, 65, 518, 916, 1154
AoxI	GGCC	2 cut(s)	709, 2724
ApeKI	GCWGC	7 cut(s)	82, 236, 371, 374, 677, 1094, 2273
ApoI	RAATTY	2 cut(s)	11, 188
AsiGI	ACCGGT	1 cut(s)	1541
Asp700I	GAANNNNTTC	1 cut(s)	564
AspLEI	GCGC	3 cut(s)	280, 1853, 1919
AspS9I	GGNCC	2 cut(s)	46, 2241
AsuC2I	CCSGG	2 cut(s)	459, 2105
AsuHPI	GGTGA	7 cut(s)	473, 497, 569, 635, 931, 1169, 1556
AsuNHI	GCTAGC	1 cut(s)	2197
AvaII	GGWCC	2 cut(s)	46, 2241
BaeGI	GKGCMC	1 cut(s)	2638
BalI	TGGCCA	1 cut(s)	711
BamHI	GGATCC	1 cut(s)	57
BanI	GGYRCC	3 cut(s)	277, 932, 2107
BanII	GRGCYC	4 cut(s)	1285, 1510, 1671, 2706
BauI	CACGAG	1 cut(s)	16
BbsI	GAAGAC	2 cut(s)	1418, 1693
Bbv12I	GWGCWC	4 cut(s)	1285, 1671, 1713, 2706
BbvI	GCAGC	7 cut(s)	94, 223, 358, 361, 664, 1081, 2285
BceAI	ACGGC	1 cut(s)	1886
BcgI	CGANNNNNNTGC	6 cut(s)	104, 138, 1340, 1374, 1642, 1676
BciT130I	CCWGG	4 cut(s)	585, 1108, 1878, 2358
BclI	TGATCA	1 cut(s)	2568
BcnI	CCSGG	2 cut(s)	459, 2105
BcoDI	GTCTC	4 cut(s)	515, 1251, 1316, 1562
BfaI	CTAG	3 cut(s)	2156, 2198, 2639
BfmI	CTRYAG	3 cut(s)	988, 1215, 2790
BfoI	RGCGCY	2 cut(s)	281, 1854
BfuAI	ACCTGC	1 cut(s)	620
BglI	GCCNNNNNGGC	1 cut(s)	286
BisI	GCNGC	9 cut(s)	83, 237, 369, 372, 375, 678, 1095, 1842, 2274
BlsI	GCNGC	9 cut(s)	84, 238, 370, 373, 376, 679, 1096, 1843, 2275
Bme1390I	CCNGG	6 cut(s)	459, 585, 1108, 1878, 2105, 2358
Bme18I	GGWCC	2 cut(s)	46, 2241
BmgT120I	GGNCC	2 cut(s)	46, 2241
BmiI	GGNNCC	8 cut(s)	59, 279, 456, 934, 1594, 2065, 2109, 2161
BmrFI	CCNGG	6 cut(s)	459, 585, 1108, 1878, 2105, 2358
BmrI	ACTGGG	1 cut(s)	2437
BmtI	GCTAGC	1 cut(s)	2201
BmuI	ACTGGG	1 cut(s)	2437
BpiI	GAAGAC	2 cut(s)	1418, 1693
BplI	GAGNNNNNCTC	2 cut(s)	2611, 2643
BpmI	CTGGAG	6 cut(s)	1716, 1773, 1788, 2029, 2490, 2655
Bpu10I	CCTNAGC	2 cut(s)	1287, 1707
BpuEI	CTTGAG	4 cut(s)	71, 1532, 2504, 2786
BpuMI	CCSGG	2 cut(s)	459, 2105
Bsa29I	ATCGAT	3 cut(s)	1245, 1350, 1662
BsaBI	GATNNNNATC	1 cut(s)	473
BsaHI	GRCGYC	1 cut(s)	278
BsaJI	CCNNGG	8 cut(s)	583, 648, 1315, 1436, 1621, 2103, 2357, 2656
BsaWI	WCCGGW	1 cut(s)	1541
BsaXI	ACNNNNNCTCC	8 cut(s)	579, 609, 1761, 1791, 2615, 2637, 2645, 2667
Bsc4I	CCNNNNNNNGG	2 cut(s)	2250, 2331
Bse118I	RCCGGY	1 cut(s)	1541
Bse1I	ACTGG	8 cut(s)	559, 1006, 1265, 1576, 1771, 2149, 2432, 2551
Bse3DI	GCAATG	3 cut(s)	370, 642, 2685
Bse8I	GATNNNNATC	1 cut(s)	473
BseBI	CCWGG	4 cut(s)	585, 1108, 1878, 2358
BseCI	ATCGAT	3 cut(s)	1245, 1350, 1662
BseDI	CCNNGG	8 cut(s)	583, 648, 1315, 1436, 1621, 2103, 2357, 2656
BseJI	GATNNNNATC	1 cut(s)	473
BseLI	CCNNNNNNNGG	2 cut(s)	2250, 2331
BseMI	GCAATG	3 cut(s)	370, 642, 2685
BseMII	CTCAG	7 cut(s)	1092, 1278, 1398, 1698, 1869, 2642, 2744
BseNI	ACTGG	8 cut(s)	559, 1006, 1265, 1576, 1771, 2149, 2432, 2551
BseRI	GAGGAG	3 cut(s)	282, 362, 503
BseSI	GKGCMC	1 cut(s)	2638
BseXI	GCAGC	7 cut(s)	94, 223, 358, 361, 664, 1081, 2285
Bsh1236I	CGCG	1 cut(s)	1917
BshFI	GGCC	2 cut(s)	711, 2726
BshNI	GGYRCC	3 cut(s)	277, 932, 2107
BshTI	ACCGGT	1 cut(s)	1541
BshVI	ATCGAT	3 cut(s)	1245, 1350, 1662
BsiHKAI	GWGCWC	4 cut(s)	1285, 1671, 1713, 2706
BsiSI	CCGG	4 cut(s)	281, 458, 1542, 2105
BslI	CCNNNNNNNGG	2 cut(s)	2250, 2331
BsmAI	GTCTC	4 cut(s)	515, 1251, 1316, 1562
BsmBI	CGTCTC	1 cut(s)	515
BsnI	GGCC	2 cut(s)	711, 2726
Bsp1286I	GDGCHC	6 cut(s)	1285, 1510, 1671, 1713, 2638, 2706
Bsp19I	CCATGG	2 cut(s)	1436, 2656
BspACI	CCGC	7 cut(s)	55, 369, 811, 1254, 1490, 1805, 1841
BspANI	GGCC	2 cut(s)	711, 2726
BspCNI	CTCAG	7 cut(s)	1091, 1279, 1399, 1699, 1868, 2641, 2745
BspDI	ATCGAT	3 cut(s)	1245, 1350, 1662
BspFNI	CGCG	1 cut(s)	1917
BspHI	TCATGA	2 cut(s)	2070, 2203
BspLI	GGNNCC	8 cut(s)	59, 279, 456, 934, 1594, 2065, 2109, 2161
BspMAI	CTGCAG	1 cut(s)	992
BspMI	ACCTGC	1 cut(s)	620
BspOI	GCTAGC	1 cut(s)	2201
BspPI	GGATC	5 cut(s)	52, 65, 518, 916, 1154
BspT107I	GGYRCC	3 cut(s)	277, 932, 2107
BsrBI	CCGCTC	1 cut(s)	55
BsrDI	GCAATG	3 cut(s)	370, 642, 2685
BsrFI	RCCGGY	1 cut(s)	1541
BsrI	ACTGG	8 cut(s)	559, 1006, 1265, 1576, 1771, 2149, 2432, 2551
BssAI	RCCGGY	1 cut(s)	1541
BssECI	CCNNGG	8 cut(s)	583, 648, 1315, 1436, 1621, 2103, 2357, 2656
BssNAI	GTATAC	1 cut(s)	2485
BssNI	GRCGYC	1 cut(s)	278
BssSI	CACGAG	1 cut(s)	16
BssT1I	CCWWGG	4 cut(s)	1315, 1436, 1621, 2656
Bst1107I	GTATAC	1 cut(s)	2485
Bst2BI	CACGAG	1 cut(s)	16
Bst2UI	CCWGG	4 cut(s)	585, 1108, 1878, 2358
Bst4CI	ACNGT	7 cut(s)	695, 883, 1402, 1487, 2182, 2489, 2842
Bst6I	CTCTTC	1 cut(s)	156
BstACI	GRCGYC	1 cut(s)	278
BstAPI	GCANNNNNTGC	2 cut(s)	392, 1201
BstC8I	GCNNGC	5 cut(s)	361, 617, 2199, 2724, 2736
BstDSI	CCRYGG	3 cut(s)	648, 1436, 2656
BstEII	GGTNACC	1 cut(s)	1544
BstFNI	CGCG	1 cut(s)	1917
BstH2I	RGCGCY	2 cut(s)	281, 1854
BstHHI	GCGC	3 cut(s)	280, 1853, 1919
BstMAI	GTCTC	4 cut(s)	515, 1251, 1316, 1562
BstNI	CCWGG	4 cut(s)	585, 1108, 1878, 2358
BstNSI	RCATGY	1 cut(s)	1603
BstPI	GGTNACC	1 cut(s)	1544
BstSCI	CCNGG	6 cut(s)	457, 583, 1106, 1876, 2103, 2356
BstSFI	CTRYAG	3 cut(s)	988, 1215, 2790
BstSLI	GKGCMC	1 cut(s)	2638
BstUI	CGCG	1 cut(s)	1917
BstV1I	GCAGC	7 cut(s)	94, 223, 358, 361, 664, 1081, 2285
BstV2I	GAAGAC	2 cut(s)	1418, 1693
BstX2I	RGATCY	2 cut(s)	57, 523
BstXI	CCANNNNNNTGG	1 cut(s)	2118
BstYI	RGATCY	2 cut(s)	57, 523
BstZ17I	GTATAC	1 cut(s)	2485
Bsu15I	ATCGAT	3 cut(s)	1245, 1350, 1662
BsuRI	GGCC	2 cut(s)	711, 2726
BsuTUI	ATCGAT	3 cut(s)	1245, 1350, 1662
BtgI	CCRYGG	3 cut(s)	648, 1436, 2656
BtgZI	GCGATG	1 cut(s)	129
BtsI	GCAGTG	2 cut(s)	997, 1827
BtsIMutI	CAGTG	8 cut(s)	997, 1492, 1827, 2142, 2178, 2544, 2636, 2838
BveI	ACCTGC	1 cut(s)	620
Cac8I	GCNNGC	5 cut(s)	361, 617, 2199, 2724, 2736
CciI	TCATGA	2 cut(s)	2070, 2203
CfoI	GCGC	3 cut(s)	280, 1853, 1919
Cfr10I	RCCGGY	1 cut(s)	1541
Cfr13I	GGNCC	2 cut(s)	46, 2241
ClaI	ATCGAT	3 cut(s)	1245, 1350, 1662
Csp6I	GTAC	6 cut(s)	696, 796, 1227, 1603, 2183, 2649
CspAI	ACCGGT	1 cut(s)	1541
CspCI	CAANNNNNGTGG	2 cut(s)	2131, 2166
CviQI	GTAC	6 cut(s)	696, 796, 1227, 1603, 2183, 2649
DinI	GGCGCC	1 cut(s)	279
DraI	TTTAAA	1 cut(s)	531
EaeI	YGGCCR	1 cut(s)	709
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Ecl136II	GAGCTC	3 cut(s)	1283, 1669, 2704
Eco130I	CCWWGG	4 cut(s)	1315, 1436, 1621, 2656
Eco24I	GRGCYC	4 cut(s)	1285, 1510, 1671, 2706
Eco47I	GGWCC	2 cut(s)	46, 2241
Eco53kI	GAGCTC	3 cut(s)	1283, 1669, 2704
Eco57I	CTGAAG	1 cut(s)	2203
Eco91I	GGTNACC	1 cut(s)	1544
EcoICRI	GAGCTC	3 cut(s)	1283, 1669, 2704
EcoO65I	GGTNACC	1 cut(s)	1544
EcoRI	GAATTC	1 cut(s)	11
EcoRII	CCWGG	4 cut(s)	583, 1106, 1876, 2356
EcoT14I	CCWWGG	4 cut(s)	1315, 1436, 1621, 2656
EcoT38I	GRGCYC	4 cut(s)	1285, 1510, 1671, 2706
EgeI	GGCGCC	1 cut(s)	279
EheI	GGCGCC	1 cut(s)	279
ErhI	CCWWGG	4 cut(s)	1315, 1436, 1621, 2656
Esp3I	CGTCTC	1 cut(s)	515
FalI	AAGNNNNNCTT	2 cut(s)	2250, 2282
FbaI	TGATCA	1 cut(s)	2568
FblI	GTMKAC	3 cut(s)	1032, 2484, 2662
Fnu4HI	GCNGC	9 cut(s)	83, 237, 369, 372, 375, 678, 1095, 1842, 2274
FriOI	GRGCYC	4 cut(s)	1285, 1510, 1671, 2706
Fsp4HI	GCNGC	9 cut(s)	83, 237, 369, 372, 375, 678, 1095, 1842, 2274
FspBI	CTAG	3 cut(s)	2156, 2198, 2639
GlaI	GCGC	3 cut(s)	279, 1852, 1918
GluI	GCNGC	9 cut(s)	83, 237, 369, 372, 375, 678, 1095, 1842, 2274
GsuI	CTGGAG	6 cut(s)	1716, 1773, 1788, 2029, 2490, 2655
HaeII	RGCGCY	2 cut(s)	281, 1854
HaeIII	GGCC	2 cut(s)	711, 2726
HapII	CCGG	4 cut(s)	281, 458, 1542, 2105
HhaI	GCGC	3 cut(s)	280, 1853, 1919
Hin1I	GRCGYC	1 cut(s)	278
Hin6I	GCGC	3 cut(s)	278, 1851, 1917
HinP1I	GCGC	3 cut(s)	278, 1851, 1917
HincII	GTYRAC	2 cut(s)	691, 1033
HindII	GTYRAC	2 cut(s)	691, 1033
HindIII	AAGCTT	1 cut(s)	155
HpaII	CCGG	4 cut(s)	281, 458, 1542, 2105
HphI	GGTGA	7 cut(s)	473, 497, 569, 635, 931, 1169, 1556
Hpy166II	GTNNAC	9 cut(s)	46, 658, 691, 1033, 1780, 2485, 2589, 2651, 2663
Hpy188I	TCNGA	6 cut(s)	172, 857, 1148, 1269, 1858, 2710
Hpy188III	TCNNGA	9 cut(s)	31, 1286, 1927, 2008, 2038, 2071, 2204, 2510, 2672
Hpy8I	GTNNAC	9 cut(s)	46, 658, 691, 1033, 1780, 2485, 2589, 2651, 2663
Hpy99I	CGWCG	2 cut(s)	1148, 2450
HpyAV	CCTTC	5 cut(s)	95, 113, 512, 575, 2109
HpyCH4III	ACNGT	7 cut(s)	695, 883, 1402, 1487, 2182, 2489, 2842
HpyCH4IV	ACGT	4 cut(s)	1225, 1366, 2647, 2781
HpySE526I	ACGT	4 cut(s)	1225, 1366, 2647, 2781
Hsp92I	GRCGYC	1 cut(s)	278
HspAI	GCGC	3 cut(s)	278, 1851, 1917
KasI	GGCGCC	1 cut(s)	277
Ksp22I	TGATCA	1 cut(s)	2568
LmnI	GCTCC	7 cut(s)	433, 1269, 1280, 1288, 1792, 2334, 2373
Lsp1109I	GCAGC	7 cut(s)	94, 223, 358, 361, 664, 1081, 2285
MaeI	CTAG	3 cut(s)	2156, 2198, 2639
MaeII	ACGT	4 cut(s)	1225, 1366, 2647, 2781
MaeIII	GTNAC	8 cut(s)	485, 740, 892, 1073, 1544, 2320, 2534, 2777
MbiI	CCGCTC	1 cut(s)	55
MfeI	CAATTG	4 cut(s)	735, 759, 957, 2393
MflI	RGATCY	2 cut(s)	57, 523
MhlI	GDGCHC	6 cut(s)	1285, 1510, 1671, 1713, 2638, 2706
MlsI	TGGCCA	1 cut(s)	711
MluNI	TGGCCA	1 cut(s)	711
Mly113I	GGCGCC	1 cut(s)	278
MlyI	GAGTC	4 cut(s)	239, 912, 1070, 1707
MmeI	TCCRAC	3 cut(s)	593, 829, 1126
Mox20I	TGGCCA	1 cut(s)	711
MroXI	GAANNNNTTC	1 cut(s)	564
MscI	TGGCCA	1 cut(s)	711
MseI	TTAA	8 cut(s)	530, 1017, 1043, 1209, 1530, 2003, 2094, 2845
MslI	CAYNNNNRTG	4 cut(s)	1190, 1485, 1716, 1755
Msp20I	TGGCCA	1 cut(s)	711
MspA1I	CMGCKG	2 cut(s)	85, 371
MspI	CCGG	4 cut(s)	281, 458, 1542, 2105
MspR9I	CCNGG	6 cut(s)	459, 585, 1108, 1878, 2105, 2358
MunI	CAATTG	4 cut(s)	735, 759, 957, 2393
MvaI	CCWGG	4 cut(s)	585, 1108, 1878, 2358
MvnI	CGCG	1 cut(s)	1917
NarI	GGCGCC	1 cut(s)	278
NciI	CCSGG	2 cut(s)	459, 2105
NcoI	CCATGG	2 cut(s)	1436, 2656
NheI	GCTAGC	1 cut(s)	2197
NlaIV	GGNNCC	8 cut(s)	59, 279, 456, 934, 1594, 2065, 2109, 2161
NmuCI	GTSAC	4 cut(s)	485, 1073, 1544, 2777
NspI	RCATGY	1 cut(s)	1603
OliI	CACNNNNGTG	2 cut(s)	1190, 1755
PagI	TCATGA	2 cut(s)	2070, 2203
PciI	ACATGT	1 cut(s)	1599
PcsI	WCGNNNNNNNCGW	4 cut(s)	1347, 1372, 2145, 2442
PdmI	GAANNNNTTC	1 cut(s)	564
PfoI	TCCNGGA	1 cut(s)	1106
PinAI	ACCGGT	1 cut(s)	1541
PkrI	GCNGC	9 cut(s)	84, 238, 370, 373, 376, 679, 1096, 1843, 2275
PleI	GAGTC	4 cut(s)	238, 912, 1070, 1706
PluTI	GGCGCC	1 cut(s)	281
PpsI	GAGTC	4 cut(s)	238, 912, 1070, 1706
PscI	ACATGT	1 cut(s)	1599
Psp124BI	GAGCTC	3 cut(s)	1285, 1671, 2706
Psp6I	CCWGG	4 cut(s)	583, 1106, 1876, 2356
PspEI	GGTNACC	1 cut(s)	1544
PspGI	CCWGG	4 cut(s)	583, 1106, 1876, 2356
PspN4I	GGNNCC	8 cut(s)	59, 279, 456, 934, 1594, 2065, 2109, 2161
PspPI	GGNCC	2 cut(s)	46, 2241
PstI	CTGCAG	1 cut(s)	992
PsuI	RGATCY	2 cut(s)	57, 523
PvuII	CAGCTG	1 cut(s)	85
RsaI	GTAC	6 cut(s)	697, 797, 1228, 1604, 2184, 2650
RsaNI	GTAC	6 cut(s)	696, 796, 1227, 1603, 2183, 2649
RseI	CAYNNNNRTG	4 cut(s)	1190, 1485, 1716, 1755
SacI	GAGCTC	3 cut(s)	1285, 1671, 2706
SalI	GTCGAC	1 cut(s)	1031
SaqAI	TTAA	8 cut(s)	530, 1017, 1043, 1209, 1530, 2003, 2094, 2845
SatI	GCNGC	9 cut(s)	83, 237, 369, 372, 375, 678, 1095, 1842, 2274
Sau96I	GGNCC	2 cut(s)	46, 2241
SchI	GAGTC	4 cut(s)	239, 912, 1070, 1707
ScrFI	CCNGG	6 cut(s)	459, 585, 1108, 1878, 2105, 2358
SduI	GDGCHC	6 cut(s)	1285, 1510, 1671, 1713, 2638, 2706
SfcI	CTRYAG	3 cut(s)	988, 1215, 2790
SfoI	GGCGCC	1 cut(s)	279
SinI	GGWCC	2 cut(s)	46, 2241
SmiMI	CAYNNNNRTG	4 cut(s)	1190, 1485, 1716, 1755
SmlI	CTYRAG	4 cut(s)	50, 1511, 2519, 2801
SmoI	CTYRAG	4 cut(s)	50, 1511, 2519, 2801
SsiI	CCGC	7 cut(s)	55, 369, 811, 1254, 1490, 1805, 1841
SspDI	GGCGCC	1 cut(s)	277
SspI	AATATT	1 cut(s)	141
SspMI	CTAG	3 cut(s)	2156, 2198, 2639
SstI	GAGCTC	3 cut(s)	1285, 1671, 2706
StyD4I	CCNGG	6 cut(s)	457, 583, 1106, 1876, 2103, 2356
StyI	CCWWGG	4 cut(s)	1315, 1436, 1621, 2656
TaaI	ACNGT	7 cut(s)	695, 883, 1402, 1487, 2182, 2489, 2842
TaiI	ACGT	4 cut(s)	1228, 1369, 2650, 2784
TaqI	TCGA	6 cut(s)	345, 516, 1032, 1245, 1350, 1662
TatI	WGTACW	1 cut(s)	2182
TauI	GCSGC	2 cut(s)	371, 1844
Tru1I	TTAA	8 cut(s)	530, 1017, 1043, 1209, 1530, 2003, 2094, 2845
Tru9I	TTAA	8 cut(s)	530, 1017, 1043, 1209, 1530, 2003, 2094, 2845
TscAI	CASTG	8 cut(s)	997, 1492, 1827, 2149, 2185, 2551, 2636, 2845
TseFI	GTSAC	4 cut(s)	485, 1073, 1544, 2777
TseI	GCWGC	7 cut(s)	82, 236, 371, 374, 677, 1094, 2273
Tsp45I	GTSAC	4 cut(s)	485, 1073, 1544, 2777
TspGWI	ACGGA	2 cut(s)	1961, 2522
TspRI	CASTG	8 cut(s)	997, 1492, 1827, 2149, 2185, 2551, 2636, 2845
VpaK11BI	GGWCC	2 cut(s)	46, 2241
XapI	RAATTY	2 cut(s)	11, 188
XceI	RCATGY	1 cut(s)	1603
XcmI	CCANNNNNNNNNTGG	1 cut(s)	665
XmiI	GTMKAC	3 cut(s)	1032, 2484, 2662
XmnI	GAANNNNTTC	1 cut(s)	564
XspI	CTAG	3 cut(s)	2156, 2198, 2639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.