Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005412

Physical Location & Seq

Genomic Coordinates Reverse (-)

55978807 .. 55985117

Gene Structure 6311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0467000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGAAGTGCCTCATTTTGGACAAAAACTTGAAGGCAATAGCTCTTGCATCAAGATCGTTTACAGATCGCTTCTACATGATGGACATTCTTTTAAATATATTAGCTGTTACTATGGCTAAATCACCATCAGCTAGATCTGGGGATCCCTCAAGTGGAAAGAAATCAGCACTTGATCGTGTTTTGGCAATAGCAAAAGCGTCTATGGTAGTAGCTAAACGAATTTTCCGATCATACATTTTAGTGGACATTTTAGCTGTTCTTCCTGTTCCACAGGTTGTAATTTTCAGCTTCTTTTCCAAAATGAGGAGCTCAAGATCTTCGGAAACAAGGAAGTTCCTAAACTCCCTTGTTGTGTTTCAATATGTGCCACGGGTTCTTCGCATTTTTCTGTTGTGTAATGAACGCCATTTGATCCCAAGAAAGGCAGGCATATGGATTAAAAGTGTTTTCAATTTCTTTCTTTACATTCTAGCTAGTCATGTACTCGGAGCTCTTTGGTATTATTTTTCTATTCTAAGAGAGACAGCTTGTTGGCAATTTGCTTACCATAGTCAAAATCAATATGAACATAGCAGTTACGACTGTGATGATCACTATACATTGAGAAATGTAACATTACTAAATGGACTATGTCCTATAGATCCACCGAACCCAACGCTCTTCGACTTTGGTGTATTTACTGATGCCTTTTTATCTGGCATGCTTGGGTCAACAGATTTTCCACAAAAAAATTTAATTTGTTTCTGGTGGGGCTTGCGAAATCTCAGTTCTCTTGGTCAGAACCTGCAGCCCAGTACCAACGCTTGGGAAAACCTCTTTGCGGTTTCCATTTCTATTATTGGCTTGCTACTATTTTTATATCTCATTGGAAATTTGCAGGTTCCGATGCTTCAAAGAATGGATGAAAGATTGTTAAGAGAGATATGTAAGTATCTTAAGCCGGTGACTTACGCAGAGGAGCATCCTATTATGGAAGAGGGGCGTCCACTTGATAAGATGTTTTTCATCAGGCTAGGCATGGTTCGGACCTACAGAATACATAAAGGAGATAAAGGTATAAAAATTGGTAATTCTAAGGTTCTTGAGCAAGGCGATTTATATGGGGAAGAACTTCTCGATTGGGTCTCAAATTTTACTCCTCCTTCTGTCTTGCCCTTGCCCAACTCGACGAGAAGTGTCAAGTCAGTAAACAAAGTCGACGTCTTTGTTCTTAAGGCTGAACACTTGGAGACCGTAGTTACGAAATGCTGGTGGCATTTCACCAAGGACAAGTTTCTGTACCAATATTATAACGAAGATCAGCTGGATCAGTTGAAGAATTTAGCAGCTTCTGCAATACAAAGACAAATCACTCGCATTCAAAAGAAGAAGTATGCAGAGGGTCCCCAAATGGTTACTGGTCACGGTAGTAAAAAGAGAAAATTAGGGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

477

Amino Acids

54.79

Weight (kDa)

9.51

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	22 - 292	6.5e-07	Ion transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80710
fragaria_vesca	FvH4_1g01460 FvH4_1g01460 FvH4_1g01460 FvH4_1g01460
malus_domestica	MD02G1011700.v1.1 MD15G1157400.v1.1
prunus_persica	Prupe.7G257900_v2.0.a1 Prupe.7G257900_v2.0.a1
pyrus_communis	pycom02g01070 pycom02g01100 pycom15g14110
rosa_chinensis	RchiOBHm_Chr2g0086391
rosa_laevigata	RLG00000015754
rosa_multiflora	Rmu_co8091234.1_g000001 Rmu_co8291973.1_g000001 Rmu_sc0005127.1_g000007 Rmu_sc0005127.1_g000009 Rmu_sc0041620.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154620 Rroxscaffold_2G00154640
rosa_rugosa	Rorug01G0467000
rosa_samantha	Rh2AG017200 Rh2AG017500 Rh2BG017000 Rh2BG017200 Rh2CG018000 Rh2DG018700
rosa_wichuraiana	Rw2G001460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1290
AatII	GACGTC	1 cut(s)	1203
Acc36I	ACCTGC	2 cut(s)	792, 868
AccB7I	CCANNNNNTGG	1 cut(s)	804
AccI	GTMKAC	1 cut(s)	1197
AciI	CCGC	1 cut(s)	821
AclWI	GGATC	5 cut(s)	137, 150, 406, 635, 1314
AcsI	RAATTY	5 cut(s)	219, 730, 871, 1129, 1318
AcyI	GRCGYC	2 cut(s)	982, 1200
AfaI	GTAC	3 cut(s)	483, 796, 1280
AfiI	CCNNNNNNNGG	6 cut(s)	16, 152, 303, 421, 804, 820
AflII	CTTAAG	2 cut(s)	935, 1211
AgsI	TTSAA	6 cut(s)	31, 359, 451, 893, 1315, 1361
Alw21I	GWGCWC	2 cut(s)	311, 493
Alw26I	GTCTC	3 cut(s)	515, 1129, 1223
AlwI	GGATC	5 cut(s)	137, 150, 406, 635, 1314
AlwNI	CAGNNNCTG	2 cut(s)	784, 1331
ApeKI	GCWGC	2 cut(s)	787, 1325
ApoI	RAATTY	5 cut(s)	219, 730, 871, 1129, 1318
ArsI	GACNNNNNNTTYG	2 cut(s)	1185, 1217
Asp700I	GAANNNNTTC	1 cut(s)	1110
AspS9I	GGNCC	2 cut(s)	1026, 1382
AsuHPI	GGTGA	3 cut(s)	114, 955, 1252
AvaII	GGWCC	2 cut(s)	1026, 1382
BamHI	GGATCC	1 cut(s)	142
BanII	GRGCYC	2 cut(s)	311, 493
Bbv12I	GWGCWC	2 cut(s)	311, 493
BbvI	GCAGC	2 cut(s)	799, 1337
BccI	CCATC	2 cut(s)	73, 133
BcgI	CGANNNNNNTGC	2 cut(s)	36, 70
BclI	TGATCA	1 cut(s)	589
BcoDI	GTCTC	3 cut(s)	515, 1129, 1223
BfaI	CTAG	4 cut(s)	132, 470, 474, 1013
BfmI	CTRYAG	3 cut(s)	636, 785, 1030
BfrI	CTTAAG	2 cut(s)	935, 1211
BfuAI	ACCTGC	2 cut(s)	792, 868
BglII	AGATCT	2 cut(s)	134, 314
BisI	GCNGC	2 cut(s)	788, 1326
BlsI	GCNGC	2 cut(s)	789, 1327
Bme18I	GGWCC	2 cut(s)	1026, 1382
BmgT120I	GGNCC	2 cut(s)	1026, 1382
BmiI	GGNNCC	4 cut(s)	144, 882, 1383, 1384
BmrI	ACTGGG	1 cut(s)	786
BmsI	GCATC	4 cut(s)	56, 673, 876, 970
BmuI	ACTGGG	1 cut(s)	786
BpuEI	CTTGAG	3 cut(s)	133, 295, 1103
BsaHI	GRCGYC	2 cut(s)	982, 1200
BsaI	GGTCTC	2 cut(s)	1129, 1223
BsaJI	CCNNGG	2 cut(s)	368, 1263
Bsc4I	CCNNNNNNNGG	6 cut(s)	16, 152, 303, 421, 804, 820
Bse118I	RCCGGY	1 cut(s)	940
Bse1I	ACTGG	2 cut(s)	792, 1402
BseDI	CCNNGG	2 cut(s)	368, 1263
BseGI	GGATG	2 cut(s)	907, 961
BseLI	CCNNNNNNNGG	6 cut(s)	16, 152, 303, 421, 804, 820
BseMII	CTCAG	1 cut(s)	778
BseNI	ACTGG	2 cut(s)	792, 1402
BseRI	GAGGAG	3 cut(s)	319, 971, 1128
BseXI	GCAGC	2 cut(s)	799, 1337
BsiHKAI	GWGCWC	2 cut(s)	311, 493
BsiSI	CCGG	1 cut(s)	941
BslFI	GGGAC	1 cut(s)	1368
BslI	CCNNNNNNNGG	6 cut(s)	16, 152, 303, 421, 804, 820
BsmAI	GTCTC	3 cut(s)	515, 1129, 1223
BsmFI	GGGAC	1 cut(s)	1368
BsmI	GAATGC	1 cut(s)	1356
Bso31I	GGTCTC	2 cut(s)	1129, 1223
Bsp1286I	GDGCHC	2 cut(s)	311, 493
BspACI	CCGC	1 cut(s)	821
BspCNI	CTCAG	1 cut(s)	777
BspLI	GGNNCC	4 cut(s)	144, 882, 1383, 1384
BspMAI	CTGCAG	1 cut(s)	789
BspMI	ACCTGC	2 cut(s)	792, 868
BspPI	GGATC	5 cut(s)	137, 150, 406, 635, 1314
BspQI	GCTCTTC	1 cut(s)	665
BspTI	CTTAAG	2 cut(s)	935, 1211
BspTNI	GGTCTC	2 cut(s)	1129, 1223
BsrFI	RCCGGY	1 cut(s)	940
BsrI	ACTGG	2 cut(s)	792, 1402
BssAI	RCCGGY	1 cut(s)	940
BssECI	CCNNGG	2 cut(s)	368, 1263
BssNI	GRCGYC	2 cut(s)	982, 1200
BssT1I	CCWWGG	1 cut(s)	1263
Bst4CI	ACNGT	3 cut(s)	584, 1234, 1406
Bst6I	CTCTTC	2 cut(s)	665, 969
BstACI	GRCGYC	2 cut(s)	982, 1200
BstAFI	CTTAAG	2 cut(s)	935, 1211
BstAPI	GCANNNNNTGC	1 cut(s)	1331
BstC8I	GCNNGC	4 cut(s)	427, 701, 755, 845
BstDEI	CTNAG	3 cut(s)	515, 764, 1074
BstDSI	CCRYGG	1 cut(s)	368
BstF5I	GGATG	2 cut(s)	907, 961
BstMAI	GTCTC	3 cut(s)	515, 1129, 1223
BstMWI	GCNNNNNNNGC	1 cut(s)	1331
BstNSI	RCATGY	1 cut(s)	703
BstSFI	CTRYAG	3 cut(s)	636, 785, 1030
BstV1I	GCAGC	2 cut(s)	799, 1337
BstX2I	RGATCY	4 cut(s)	134, 142, 314, 640
BstYI	RGATCY	4 cut(s)	134, 142, 314, 640
BtgI	CCRYGG	1 cut(s)	368
BtsCI	GGATG	2 cut(s)	907, 961
BveI	ACCTGC	2 cut(s)	792, 868
Cac8I	GCNNGC	4 cut(s)	427, 701, 755, 845
CaiI	CAGNNNCTG	2 cut(s)	784, 1331
Cfr10I	RCCGGY	1 cut(s)	940
Cfr13I	GGNCC	2 cut(s)	1026, 1382
CseI	GACGC	2 cut(s)	186, 971
Csp6I	GTAC	3 cut(s)	482, 795, 1279
CviAII	CATG	4 cut(s)	76, 479, 700, 1018
CviQI	GTAC	3 cut(s)	482, 795, 1279
DdeI	CTNAG	3 cut(s)	515, 764, 1074
DraI	TTTAAA	1 cut(s)	93
Eam1104I	CTCTTC	2 cut(s)	665, 969
EarI	CTCTTC	2 cut(s)	665, 969
Ecl136II	GAGCTC	2 cut(s)	309, 491
Eco130I	CCWWGG	1 cut(s)	1263
Eco24I	GRGCYC	2 cut(s)	311, 493
Eco31I	GGTCTC	2 cut(s)	1129, 1223
Eco47I	GGWCC	2 cut(s)	1026, 1382
Eco53kI	GAGCTC	2 cut(s)	309, 491
EcoICRI	GAGCTC	2 cut(s)	309, 491
EcoO109I	RGGNCCY	1 cut(s)	1382
EcoT14I	CCWWGG	1 cut(s)	1263
EcoT38I	GRGCYC	2 cut(s)	311, 493
ErhI	CCWWGG	1 cut(s)	1263
FaeI	CATG	4 cut(s)	79, 482, 703, 1021
FaqI	GGGAC	1 cut(s)	1368
FatI	CATG	4 cut(s)	75, 478, 699, 1017
FauNDI	CATATG	1 cut(s)	431
FbaI	TGATCA	1 cut(s)	589
FblI	GTMKAC	1 cut(s)	1197
Fnu4HI	GCNGC	2 cut(s)	788, 1326
FokI	GGATG	2 cut(s)	914, 948
FriOI	GRGCYC	2 cut(s)	311, 493
Fsp4HI	GCNGC	2 cut(s)	788, 1326
FspBI	CTAG	4 cut(s)	132, 470, 474, 1013
GluI	GCNGC	2 cut(s)	788, 1326
HapII	CCGG	1 cut(s)	941
HgaI	GACGC	2 cut(s)	186, 971
Hin1I	GRCGYC	2 cut(s)	982, 1200
Hin1II	CATG	4 cut(s)	79, 482, 703, 1021
HincII	GTYRAC	2 cut(s)	711, 1198
HindII	GTYRAC	2 cut(s)	711, 1198
HpaII	CCGG	1 cut(s)	941
HphI	GGTGA	3 cut(s)	114, 955, 1252
Hpy166II	GTNNAC	6 cut(s)	60, 244, 711, 986, 1189, 1198
Hpy188I	TCNGA	6 cut(s)	227, 322, 488, 780, 885, 1026
Hpy188III	TCNNGA	4 cut(s)	51, 312, 1082, 1115
Hpy8I	GTNNAC	6 cut(s)	60, 244, 711, 986, 1189, 1198
Hpy99I	CGWCG	2 cut(s)	1171, 1202
HpyAV	CCTTC	2 cut(s)	25, 1152
HpyCH4III	ACNGT	3 cut(s)	584, 1234, 1406
HpyCH4IV	ACGT	1 cut(s)	1200
HpyCH4V	TGCA	5 cut(s)	47, 787, 877, 1334, 1376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1331
HpyF3I	CTNAG	3 cut(s)	515, 764, 1074
HpySE526I	ACGT	1 cut(s)	1200
Hsp92I	GRCGYC	2 cut(s)	982, 1200
Hsp92II	CATG	4 cut(s)	79, 482, 703, 1021
KflI	GGGWCCC	1 cut(s)	1382
Ksp22I	TGATCA	1 cut(s)	589
LguI	GCTCTTC	1 cut(s)	665
LmnI	GCTCC	3 cut(s)	306, 488, 958
Lsp1109I	GCAGC	2 cut(s)	799, 1337
LweI	GCATC	4 cut(s)	56, 673, 876, 970
MaeI	CTAG	4 cut(s)	132, 470, 474, 1013
MaeII	ACGT	1 cut(s)	1200
MaeIII	GTNAC	7 cut(s)	106, 575, 610, 943, 1237, 1393, 1400
MboII	GAAGA	9 cut(s)	251, 309, 368, 652, 986, 1118, 1307, 1327, 1378
MflI	RGATCY	4 cut(s)	134, 142, 314, 640
MhlI	GDGCHC	2 cut(s)	311, 493
MnlI	CCTC	8 cut(s)	20, 157, 297, 824, 949, 970, 1149, 1372
MroXI	GAANNNNTTC	1 cut(s)	1110
MseI	TTAA	6 cut(s)	92, 438, 734, 914, 936, 1212
MslI	CAYNNNNRTG	1 cut(s)	239
MspA1I	CMGCKG	1 cut(s)	1303
MspCI	CTTAAG	2 cut(s)	935, 1211
MspI	CCGG	1 cut(s)	941
Mva1269I	GAATGC	1 cut(s)	1356
MwoI	GCNNNNNNNGC	1 cut(s)	1331
NdeI	CATATG	1 cut(s)	431
NlaIII	CATG	4 cut(s)	79, 482, 703, 1021
NlaIV	GGNNCC	4 cut(s)	144, 882, 1383, 1384
NmuCI	GTSAC	2 cut(s)	943, 1400
NspI	RCATGY	1 cut(s)	703
PaeI	GCATGC	1 cut(s)	703
PciSI	GCTCTTC	1 cut(s)	665
PcsI	WCGNNNNNNNCGW	1 cut(s)	223
PctI	GAATGC	1 cut(s)	1356
PdmI	GAANNNNTTC	1 cut(s)	1110
PflFI	GACNNNGTC	1 cut(s)	630
PflMI	CCANNNNNTGG	1 cut(s)	804
PkrI	GCNGC	2 cut(s)	789, 1327
PpuMI	RGGWCCY	1 cut(s)	1382
PsiI	TTATAA	1 cut(s)	1290
Psp124BI	GAGCTC	2 cut(s)	311, 493
Psp5II	RGGWCCY	1 cut(s)	1382
PspN4I	GGNNCC	4 cut(s)	144, 882, 1383, 1384
PspPI	GGNCC	2 cut(s)	1026, 1382
PspPPI	RGGWCCY	1 cut(s)	1382
PstI	CTGCAG	1 cut(s)	789
PstNI	CAGNNNCTG	2 cut(s)	784, 1331
PsuI	RGATCY	4 cut(s)	134, 142, 314, 640
PsyI	GACNNNGTC	1 cut(s)	630
PvuII	CAGCTG	1 cut(s)	1303
RsaI	GTAC	3 cut(s)	483, 796, 1280
RsaNI	GTAC	3 cut(s)	482, 795, 1279
RseI	CAYNNNNRTG	1 cut(s)	239
SacI	GAGCTC	2 cut(s)	311, 493
SalI	GTCGAC	1 cut(s)	1196
SapI	GCTCTTC	1 cut(s)	665
SaqAI	TTAA	6 cut(s)	92, 438, 734, 914, 936, 1212
SatI	GCNGC	2 cut(s)	788, 1326
Sau96I	GGNCC	2 cut(s)	1026, 1382
SduI	GDGCHC	2 cut(s)	311, 493
SfaNI	GCATC	4 cut(s)	56, 673, 876, 970
SfcI	CTRYAG	3 cut(s)	636, 785, 1030
SinI	GGWCC	2 cut(s)	1026, 1382
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	5 cut(s)	148, 310, 935, 1082, 1211
SmoI	CTYRAG	5 cut(s)	148, 310, 935, 1082, 1211
SphI	GCATGC	1 cut(s)	703
SsiI	CCGC	1 cut(s)	821
SspI	AATATT	1 cut(s)	1286
SspMI	CTAG	4 cut(s)	132, 470, 474, 1013
SstI	GAGCTC	2 cut(s)	311, 493
StyI	CCWWGG	1 cut(s)	1263
TaaI	ACNGT	3 cut(s)	584, 1234, 1406
TaiI	ACGT	1 cut(s)	1203
TaqI	TCGA	4 cut(s)	663, 1116, 1166, 1197
TatI	WGTACW	1 cut(s)	481
Tru1I	TTAA	6 cut(s)	92, 438, 734, 914, 936, 1212
Tru9I	TTAA	6 cut(s)	92, 438, 734, 914, 936, 1212
TseFI	GTSAC	2 cut(s)	943, 1400
TseI	GCWGC	2 cut(s)	787, 1325
Tsp45I	GTSAC	2 cut(s)	943, 1400
TspDTI	ATGAA	5 cut(s)	17, 414, 579, 918, 994
Tth111I	GACNNNGTC	1 cut(s)	630
Van91I	CCANNNNNTGG	1 cut(s)	804
Vha464I	CTTAAG	2 cut(s)	935, 1211
VpaK11BI	GGWCC	2 cut(s)	1026, 1382
XapI	RAATTY	5 cut(s)	219, 730, 871, 1129, 1318
XceI	RCATGY	1 cut(s)	703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1394
XmiI	GTMKAC	1 cut(s)	1197
XmnI	GAANNNNTTC	1 cut(s)	1110
XspI	CTAG	4 cut(s)	132, 470, 474, 1013
ZraI	GACGTC	1 cut(s)	1201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.