Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005412

Physical Location & Seq

Genomic Coordinates Forward (+)

616916 .. 618214

Gene Structure 1299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g01100.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTCAAAGATCTTTACCAGTTGTTATGATGGCTATATCCGGTTGATGGATGCCGAGAAAGAGGTGTTTGATCTAGTACATTCCAGTGAAGAGCCTATATACTCTATGTCCCAACAATCGAAGGGTCCGAACTGCTTATATTTTGCCGAGGGCAATGGAGGTTTAAGTGTCTGGGATCAGAGAACTGGAAGCTTCTCAAACCAGTGGTCTTTCTATGAATACCGAATCAATATCATTGACTTTAGCTCAGCAAACCCTAACGTCATGGCCACTAGTTCCTCAGACGGAACTGCCTGCATTTGGGATTTGAGAAGTATTGATGCAGATAAAACTTTACGAACAGTTAGCCACAATAGGGCTGTGCATTCTGCTTACTTCTCGCCTTCTGGAGGGTTTCTTGCAACGACAAGTATTGACGATACAGTTGGTATATCGAGTGGAGCTAATTTCGAGGACACATCAATGATATACCATAACAATAATACCAGCAGATGGATTTCTAAGTTCAGGGGAATATGGGGGTGGGACGACGCCTATGTCTTCATTGGCAATGTGAAAAGAGGAGTAGATGTGATCTCCCCAGCTGCAAGAAGAGCAGTGCTCACTTTAGAGAGCCCGCACATGACTGCGATTCCGTGTCGATTTGATGCTCACCCTTACAACGTTGGGATGTTAGCAGGATCCACAGCCGGAGGCCAAGTTTATGTATGGACATTGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

241

Amino Acids

26.55

Weight (kDa)

5.44

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80710
fragaria_vesca	FvH4_1g01460 FvH4_1g01460 FvH4_1g01460 FvH4_1g01460
malus_domestica	MD02G1011700.v1.1 MD15G1157400.v1.1
prunus_persica	Prupe.7G257900_v2.0.a1 Prupe.7G257900_v2.0.a1
pyrus_communis	pycom02g01070 pycom02g01100 pycom15g14110
rosa_chinensis	RchiOBHm_Chr2g0086391
rosa_laevigata	RLG00000015754
rosa_multiflora	Rmu_co8091234.1_g000001 Rmu_co8291973.1_g000001 Rmu_sc0005127.1_g000007 Rmu_sc0005127.1_g000009 Rmu_sc0041620.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154620 Rroxscaffold_2G00154640
rosa_rugosa	Rorug01G0467000
rosa_samantha	Rh2AG017200 Rh2AG017500 Rh2BG017000 Rh2BG017200 Rh2CG018000 Rh2DG018700
rosa_wichuraiana	Rw2G001460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	536
AccB7I	CCANNNNNTGG	1 cut(s)	492
AciI	CCGC	1 cut(s)	617
AclI	AACGTT	1 cut(s)	663
AclWI	GGATC	3 cut(s)	183, 675, 688
AcoI	YGGCCR	1 cut(s)	267
AcyI	GRCGYC	1 cut(s)	531
AfaI	GTAC	1 cut(s)	78
AfiI	CCNNNNNNNGG	5 cut(s)	46, 300, 355, 389, 492
AhlI	ACTAGT	1 cut(s)	272
AluBI	AGCT	4 cut(s)	192, 246, 443, 584
AluI	AGCT	4 cut(s)	192, 246, 443, 584
Alw21I	GWGCWC	1 cut(s)	603
AlwI	GGATC	3 cut(s)	183, 675, 688
AoxI	GGCC	2 cut(s)	267, 694
ApeKI	GCWGC	1 cut(s)	584
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
AspS9I	GGNCC	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	644
AvaII	GGWCC	1 cut(s)	125
BalI	TGGCCA	1 cut(s)	269
BamHI	GGATCC	1 cut(s)	680
BanII	GRGCYC	1 cut(s)	617
BbsI	GAAGAC	1 cut(s)	532
Bbv12I	GWGCWC	1 cut(s)	603
BbvI	GCAGC	1 cut(s)	571
BccI	CCATC	3 cut(s)	23, 40, 486
BcuI	ACTAGT	1 cut(s)	272
BfaI	CTAG	3 cut(s)	74, 273, 721
BglII	AGATCT	1 cut(s)	9
BisI	GCNGC	1 cut(s)	585
BlpI	GCTNAGC	1 cut(s)	247
BlsI	GCNGC	1 cut(s)	586
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	2 cut(s)	126, 682
BmsI	GCATC	3 cut(s)	40, 310, 637
BpiI	GAAGAC	1 cut(s)	532
BplI	GAGNNNNNCTC	2 cut(s)	585, 617
BpmI	CTGGAG	1 cut(s)	408
Bpu1102I	GCTNAGC	1 cut(s)	247
BsaHI	GRCGYC	1 cut(s)	531
BsaJI	CCNNGG	1 cut(s)	147
BsaWI	WCCGGW	1 cut(s)	39
BsaXI	ACNNNNNCTCC	4 cut(s)	555, 585, 684, 714
Bsc4I	CCNNNNNNNGG	5 cut(s)	46, 300, 355, 389, 492
Bse1I	ACTGG	4 cut(s)	18, 84, 190, 202
Bse3DI	GCAATG	2 cut(s)	160, 556
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	2 cut(s)	55, 675
BseLI	CCNNNNNNNGG	5 cut(s)	46, 300, 355, 389, 492
BseMI	GCAATG	2 cut(s)	160, 556
BseMII	CTCAG	2 cut(s)	261, 294
BseNI	ACTGG	4 cut(s)	18, 84, 190, 202
BseRI	GAGGAG	1 cut(s)	576
BseXI	GCAGC	1 cut(s)	571
BseYI	CCCAGC	1 cut(s)	580
BshFI	GGCC	2 cut(s)	269, 696
BsiHKAI	GWGCWC	1 cut(s)	603
BsiSI	CCGG	2 cut(s)	40, 690
BslFI	GGGAC	2 cut(s)	94, 539
BslI	CCNNNNNNNGG	5 cut(s)	46, 300, 355, 389, 492
BsmFI	GGGAC	2 cut(s)	94, 539
BsmI	GAATGC	1 cut(s)	364
BsnI	GGCC	2 cut(s)	269, 696
Bsp1286I	GDGCHC	2 cut(s)	603, 617
Bsp143I	GATC	5 cut(s)	9, 70, 175, 573, 680
Bsp1720I	GCTNAGC	1 cut(s)	247
BspACI	CCGC	1 cut(s)	617
BspANI	GGCC	2 cut(s)	269, 696
BspCNI	CTCAG	2 cut(s)	260, 293
BspLI	GGNNCC	2 cut(s)	126, 682
BspPI	GGATC	3 cut(s)	183, 675, 688
BspQI	GCTCTTC	2 cut(s)	84, 586
BsrDI	GCAATG	2 cut(s)	160, 556
BsrI	ACTGG	4 cut(s)	18, 84, 190, 202
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	5 cut(s)	9, 70, 175, 573, 680
BssNI	GRCGYC	1 cut(s)	531
Bst4CI	ACNGT	2 cut(s)	343, 424
Bst6I	CTCTTC	2 cut(s)	84, 586
BstACI	GRCGYC	1 cut(s)	531
BstC8I	GCNNGC	2 cut(s)	295, 617
BstDEI	CTNAG	3 cut(s)	247, 280, 501
BstENI	CCTNNNNNAGG	1 cut(s)	387
BstF5I	GGATG	2 cut(s)	55, 675
BstKTI	GATC	5 cut(s)	12, 73, 178, 576, 683
BstMBI	GATC	5 cut(s)	9, 70, 175, 573, 680
BstMWI	GCNNNNNNNGC	1 cut(s)	593
BstV1I	GCAGC	1 cut(s)	571
BstV2I	GAAGAC	1 cut(s)	532
BstX2I	RGATCY	2 cut(s)	9, 680
BstYI	RGATCY	2 cut(s)	9, 680
BsuRI	GGCC	2 cut(s)	269, 696
BtsCI	GGATG	2 cut(s)	55, 675
BtsI	GCAGTG	1 cut(s)	603
BtsIMutI	CAGTG	3 cut(s)	91, 209, 603
Cac8I	GCNNGC	2 cut(s)	295, 617
Cfr13I	GGNCC	1 cut(s)	125
CseI	GACGC	1 cut(s)	539
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	2 cut(s)	265, 622
CviQI	GTAC	1 cut(s)	77
DdeI	CTNAG	3 cut(s)	247, 280, 501
DpnI	GATC	5 cut(s)	11, 72, 177, 575, 682
DpnII	GATC	5 cut(s)	9, 70, 175, 573, 680
DrdI	GACNNNNNNGTC	1 cut(s)	536
DseDI	GACNNNNNNGTC	1 cut(s)	536
EaeI	YGGCCR	1 cut(s)	267
Eam1104I	CTCTTC	2 cut(s)	84, 586
EarI	CTCTTC	2 cut(s)	84, 586
Eco24I	GRGCYC	1 cut(s)	617
Eco47I	GGWCC	1 cut(s)	125
EcoNI	CCTNNNNNAGG	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	617
FaeI	CATG	2 cut(s)	268, 625
FaqI	GGGAC	2 cut(s)	94, 539
FatI	CATG	2 cut(s)	264, 621
FauI	CCCGC	1 cut(s)	624
Fnu4HI	GCNGC	1 cut(s)	585
FokI	GGATG	2 cut(s)	62, 682
FriOI	GRGCYC	1 cut(s)	617
Fsp4HI	GCNGC	1 cut(s)	585
FspBI	CTAG	3 cut(s)	74, 273, 721
GluI	GCNGC	1 cut(s)	585
GsaI	CCCAGC	1 cut(s)	584
GsuI	CTGGAG	1 cut(s)	408
HaeIII	GGCC	2 cut(s)	269, 696
HapII	CCGG	2 cut(s)	40, 690
HgaI	GACGC	1 cut(s)	539
Hin1I	GRCGYC	1 cut(s)	531
Hin1II	CATG	2 cut(s)	268, 625
HindIII	AAGCTT	1 cut(s)	190
HinfI	GANTC	2 cut(s)	225, 631
HpaII	CCGG	2 cut(s)	40, 690
HphI	GGTGA	1 cut(s)	644
Hpy188I	TCNGA	3 cut(s)	129, 180, 283
Hpy188III	TCNNGA	1 cut(s)	387
Hpy99I	CGWCG	1 cut(s)	533
HpyAV	CCTTC	2 cut(s)	115, 393
HpyCH4III	ACNGT	2 cut(s)	343, 424
HpyCH4IV	ACGT	2 cut(s)	261, 663
HpyCH4V	TGCA	5 cut(s)	297, 323, 364, 401, 587
HpyF10VI	GCNNNNNNNGC	1 cut(s)	593
HpyF3I	CTNAG	3 cut(s)	247, 280, 501
HpySE526I	ACGT	2 cut(s)	261, 663
Hsp92I	GRCGYC	1 cut(s)	531
Hsp92II	CATG	2 cut(s)	268, 625
Kzo9I	GATC	5 cut(s)	9, 70, 175, 573, 680
LguI	GCTCTTC	2 cut(s)	84, 586
LmnI	GCTCC	1 cut(s)	440
Lsp1109I	GCAGC	1 cut(s)	571
LweI	GCATC	3 cut(s)	40, 310, 637
MaeI	CTAG	3 cut(s)	74, 273, 721
MaeII	ACGT	2 cut(s)	261, 663
MalI	GATC	5 cut(s)	11, 72, 177, 575, 682
MboI	GATC	5 cut(s)	9, 70, 175, 573, 680
MboII	GAAGA	3 cut(s)	101, 532, 603
MflI	RGATCY	2 cut(s)	9, 680
MhlI	GDGCHC	2 cut(s)	603, 617
MlsI	TGGCCA	1 cut(s)	269
MluCI	AATT	1 cut(s)	445
MluNI	TGGCCA	1 cut(s)	269
MnlI	CCTC	8 cut(s)	55, 142, 152, 289, 383, 445, 554, 686
Mox20I	TGGCCA	1 cut(s)	269
MscI	TGGCCA	1 cut(s)	269
MseI	TTAA	1 cut(s)	164
MslI	CAYNNNNRTG	2 cut(s)	84, 461
Msp20I	TGGCCA	1 cut(s)	269
MspA1I	CMGCKG	1 cut(s)	584
MspI	CCGG	2 cut(s)	40, 690
Mva1269I	GAATGC	1 cut(s)	364
MwoI	GCNNNNNNNGC	1 cut(s)	593
NdeII	GATC	5 cut(s)	9, 70, 175, 573, 680
NlaIII	CATG	2 cut(s)	268, 625
NlaIV	GGNNCC	2 cut(s)	126, 682
NmeAIII	GCCGAG	2 cut(s)	79, 172
PciSI	GCTCTTC	2 cut(s)	84, 586
PcsI	WCGNNNNNNNCGW	1 cut(s)	125
PctI	GAATGC	1 cut(s)	364
PfeI	GAWTC	2 cut(s)	225, 631
PflMI	CCANNNNNTGG	1 cut(s)	492
PkrI	GCNGC	1 cut(s)	586
Psp1406I	AACGTT	1 cut(s)	663
PspFI	CCCAGC	1 cut(s)	580
PspN4I	GGNNCC	2 cut(s)	126, 682
PspPI	GGNCC	1 cut(s)	125
PsuI	RGATCY	2 cut(s)	9, 680
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
RseI	CAYNNNNRTG	2 cut(s)	84, 461
SapI	GCTCTTC	2 cut(s)	84, 586
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	1 cut(s)	585
Sau3AI	GATC	5 cut(s)	9, 70, 175, 573, 680
Sau96I	GGNCC	1 cut(s)	125
SduI	GDGCHC	2 cut(s)	603, 617
SetI	ASST	8 cut(s)	66, 163, 194, 248, 264, 445, 586, 666
SfaNI	GCATC	3 cut(s)	40, 310, 637
SinI	GGWCC	1 cut(s)	125
SmiMI	CAYNNNNRTG	2 cut(s)	84, 461
SpeI	ACTAGT	1 cut(s)	272
Sse9I	AATT	1 cut(s)	445
SsiI	CCGC	1 cut(s)	617
SspMI	CTAG	3 cut(s)	74, 273, 721
TaaI	ACNGT	2 cut(s)	343, 424
TaiI	ACGT	2 cut(s)	264, 666
TaqI	TCGA	4 cut(s)	119, 434, 450, 640
TasI	AATT	1 cut(s)	445
TatI	WGTACW	1 cut(s)	76
TfiI	GAWTC	2 cut(s)	225, 631
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TscAI	CASTG	3 cut(s)	91, 209, 603
TseI	GCWGC	1 cut(s)	584
TspDTI	ATGAA	2 cut(s)	231, 532
TspGWI	ACGGA	2 cut(s)	300, 624
TspRI	CASTG	3 cut(s)	91, 209, 603
Van91I	CCANNNNNTGG	1 cut(s)	492
VpaK11BI	GGWCC	1 cut(s)	125
XagI	CCTNNNNNAGG	1 cut(s)	387
XspI	CTAG	3 cut(s)	74, 273, 721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.