Rh2CG018000

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0005412
Physical Location & Seq
Forward (+)
1429654 .. 1432635
2982 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG018000.1

Sequence Viewer

Length: 1281 bp
ATGGCGACTCAGAAACTCACAGACTATGAGCGCAAGAGGCTCGAGAACATTCGCCGGAACGAGGAATTGATGGCTTCCCTGAAGCTCCAATCCATGGCCACCCAACTCTCTGCCTCAACCAAACGCCCCAGGGTTGAGACCAAATCGTACAAGGTCAATTCGGAGAAGCAGCCCAAGACCCAGGACCCAACTGTTATCAGGCGTTCTCTACGCACCAGAGGATTACCACCCGATGCGAAAGAACTAGGTGGTGATGGGGATGATGACTCTGTGGTGAAGACCCTAGAATATGTAGACCCTAAGGCATCGGCTCGCAAATTGGGTCCTCTTAGTATGAGAGATGTGTATAGCGGAGTATCGGATAGAGCTCTGATTGAGGCCATTTTGGGTGTTGAGAAGAAACCCCAATTGGGTTTGGAAGTTAAAGGTGAATTTGGGGGTTGCAAAGAGGAGAGATCAAGTGGTGCATTTATCTTAGTTGGCGGGGTTAGTTGTGATTTGAGTAAGAAATTAGGAGTTGAGAGTGATTTGAAGGTGGAGTCTTTGACTCTGAATGAGGAGAATGTAGCCCGAGTTGTGCCGGGGAATGTCATGAATGTGAGATTTTTTCCGAGTACTAGTTTGAGGATGGTTGTGGTTGGGAATAAGGCTGGGAATGTTGGATTTTGGAATGTTGATTCTAAGGAAGGGGAGGAAGGTGGGATATGTATGTATCACCCACATTCTGGTCCCATTTCGGGGATTTCTATTCACCAAGATTGCATGTCAAAGATCTTTACTAGTTGCTATGATGGATTTATCCGATTGATGGATGCTGAGAAAGAGGTGTTTGATCTAGTATATTCAAGTGGTGAGACTATATATTCTCTCGCTCAACAGTCAAACAATGCAAAGTGTTTATACTTTGCTGAGGGTCGTGGAGGTATAAGTATGTGGGATGAGAGAACAGGAAACATCTCAGCCCAATGGAGTCCGCATGATGATAGAATCAATTCCATAGACTTTAACTCAGAAAATTCAAACATCATCACCACTAGTTCAACAGATGGAACTGCCTGCATTTGGGATTTGAGATGTATTGATGCAGATAAATTCAAAAGTTTGAAGACAATTGGCCACAAAAGGGCTGTGCATTCTGCCTACTTCTCACCTTCTGGAAGGTCGCTAGTGACGACAAGTCTTGATGACACAGTTGGTATATCAAGTGGAGTTAATTTTGAGGACATGTCAATGATATCCCATGATAATAATACAGGCAGATGGATTCCTAAGTTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

426

Amino Acids

46.97

Weight (kDa)

6.43

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_Gbeta PF25391 182 - 415 5.1e-08 G protein beta WD-40 repeat protein
WD40_Prp19 PF24814 196 - 395 2.6e-16 Prp19 WD40 domain
WDR55 PF24796 196 - 358 2.5e-12 WDR55
Beta-prop_WDR36-Utp21_2nd PF25168 209 - 400 3.9e-10 WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3 PF25174 219 - 400 3.2e-14 THOC3 beta-propeller domain
Beta-prop_EML_2 PF23414 247 - 393 6.6e-06 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 255 - 397 1.8e-08 WDR36/Utp21 first beta-propeller
WD40_CDC20-Fz PF24807 279 - 412 3.3e-12 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 286 - 398 3e-11 WDR3 first beta-propeller domain
EIF3I PF24805 290 - 386 1.7e-07 EIF3I
Beta-prop_EIPR1 PF23609 302 - 398 3.1e-08 EIPR1 beta-propeller
Beta-prop_WDR5 PF25175 309 - 400 7.5e-13 WDR5 beta-propeller domain
Beta-prop_RIG_2nd PF23775 319 - 392 1.6e-06 RIG second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 94, 725
AccI GTMKAC 1 cut(s) 294
AciI CCGC 3 cut(s) 351, 483, 974
AcoI YGGCCR 2 cut(s) 96, 1114
AcsI RAATTY 3 cut(s) 431, 1015, 1091
AcuI CTGAAG 1 cut(s) 101
AfaI GTAC 2 cut(s) 149, 616
AfiI CCNNNNNNNGG 9 cut(s) 61, 94, 410, 725, 737, 738, 808, 1062, 1123
AflIII ACRYGT 1 cut(s) 1224
AgsI TTSAA 7 cut(s) 532, 846, 1020, 1041, 1096, 1105, 1276
AhdI GACNNNNNGTC 1 cut(s) 1176
AhlI ACTAGT 3 cut(s) 617, 779, 1034
AjnI CCWGG 2 cut(s) 128, 180
AjuI GAANNNNNNNTTGG 2 cut(s) 392, 424
AluBI AGCT 2 cut(s) 85, 368
AluI AGCT 2 cut(s) 85, 368
Alw21I GWGCWC 1 cut(s) 370
Alw26I GTCTC 2 cut(s) 131, 848
Ama87I CYCGRG 2 cut(s) 41, 570
AoxI GGCC 3 cut(s) 96, 378, 1114
ApeKI GCWGC 1 cut(s) 169
ApoI RAATTY 3 cut(s) 431, 1015, 1091
Asp700I GAANNNNTTC 1 cut(s) 991
AspLEI GCGC 1 cut(s) 33
AspS9I GGNCC 3 cut(s) 184, 323, 728
AsuC2I CCSGG 1 cut(s) 582
AsuHPI GGTGA 8 cut(s) 263, 286, 440, 707, 743, 863, 1021, 1140
AvaI CYCGRG 2 cut(s) 41, 570
AvaII GGWCC 3 cut(s) 184, 323, 728
AxyI CCTNAGG 1 cut(s) 300
BalI TGGCCA 2 cut(s) 98, 1116
BanII GRGCYC 1 cut(s) 370
BbsI GAAGAC 2 cut(s) 284, 1112
Bbv12I GWGCWC 1 cut(s) 370
BbvCI CCTCAGC 1 cut(s) 909
BbvI GCAGC 1 cut(s) 181
BccI CCATC 7 cut(s) 64, 248, 622, 785, 802, 1040, 1254
BcgI CGANNNNNNTGC 2 cut(s) 22, 56
BciT130I CCWGG 2 cut(s) 130, 182
BcnI CCSGG 1 cut(s) 582
BcoDI GTCTC 2 cut(s) 131, 848
BcuI ACTAGT 3 cut(s) 617, 779, 1034
BfaI CTAG 7 cut(s) 245, 284, 618, 780, 836, 1035, 1166
BglII AGATCT 1 cut(s) 771
BisI GCNGC 1 cut(s) 170
BlsI GCNGC 1 cut(s) 171
BmcAI AGTACT 1 cut(s) 616
Bme1390I CCNGG 3 cut(s) 130, 182, 582
Bme18I GGWCC 3 cut(s) 184, 323, 728
BmeRI GACNNNNNGTC 1 cut(s) 1176
BmeT110I CYCGRG 2 cut(s) 41, 570
BmgT120I GGNCC 3 cut(s) 184, 323, 728
BmiI GGNNCC 3 cut(s) 186, 324, 730
BmrFI CCNGG 3 cut(s) 130, 182, 582
BmsI GCATC 4 cut(s) 223, 314, 802, 1072
BpiI GAAGAC 2 cut(s) 284, 1112
Bpu10I CCTNAGC 1 cut(s) 909
BpuMI CCSGG 1 cut(s) 582
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 5 cut(s) 93, 128, 129, 180, 581
Bsc4I CCNNNNNNNGG 9 cut(s) 61, 94, 410, 725, 737, 738, 808, 1062, 1123
Bse21I CCTNAGG 1 cut(s) 300
BseBI CCWGG 2 cut(s) 130, 182
BseDI CCNNGG 5 cut(s) 93, 128, 129, 180, 581
BseGI GGATG 4 cut(s) 265, 633, 817, 943
BseLI CCNNNNNNNGG 9 cut(s) 61, 94, 410, 725, 737, 738, 808, 1062, 1123
BseMII CTCAG 5 cut(s) 23, 807, 900, 972, 1023
BseRI GAGGAG 2 cut(s) 464, 572
BseXI GCAGC 1 cut(s) 181
BseYI CCCAGC 1 cut(s) 650
BshFI GGCC 3 cut(s) 98, 380, 1116
BsiHKAI GWGCWC 1 cut(s) 370
BsiHKCI CYCGRG 2 cut(s) 41, 570
BsiSI CCGG 2 cut(s) 55, 581
BslFI GGGAC 1 cut(s) 714
BslI CCNNNNNNNGG 9 cut(s) 61, 94, 410, 725, 737, 738, 808, 1062, 1123
BsmAI GTCTC 2 cut(s) 131, 848
BsmFI GGGAC 1 cut(s) 714
BsmI GAATGC 1 cut(s) 1132
BsnI GGCC 3 cut(s) 98, 380, 1116
Bso31I GGTCTC 1 cut(s) 131
BsoBI CYCGRG 2 cut(s) 41, 570
Bsp1286I GDGCHC 1 cut(s) 370
Bsp143I GATC 3 cut(s) 455, 771, 832
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 3 cut(s) 351, 483, 974
BspANI GGCC 3 cut(s) 98, 380, 1116
BspCNI CTCAG 5 cut(s) 22, 808, 901, 971, 1022
BspHI TCATGA 1 cut(s) 591
BspLI GGNNCC 3 cut(s) 186, 324, 730
BspTNI GGTCTC 1 cut(s) 131
BssECI CCNNGG 5 cut(s) 93, 128, 129, 180, 581
BssMI GATC 3 cut(s) 455, 771, 832
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 2 cut(s) 130, 182
Bst4CI ACNGT 3 cut(s) 193, 879, 1192
BstC8I GCNNGC 2 cut(s) 313, 1057
BstDSI CCRYGG 1 cut(s) 93
BstF5I GGATG 4 cut(s) 265, 633, 817, 943
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 3 cut(s) 458, 774, 835
BstMAI GTCTC 2 cut(s) 131, 848
BstMBI GATC 3 cut(s) 455, 771, 832
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 2 cut(s) 130, 182
BstNSI RCATGY 2 cut(s) 766, 1228
BstSCI CCNGG 3 cut(s) 128, 180, 580
BstV1I GCAGC 1 cut(s) 181
BstV2I GAAGAC 2 cut(s) 284, 1112
BstX2I RGATCY 1 cut(s) 771
BstYI RGATCY 1 cut(s) 771
Bsu36I CCTNAGG 1 cut(s) 300
BsuRI GGCC 3 cut(s) 98, 380, 1116
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 4 cut(s) 265, 633, 817, 943
Cac8I GCNNGC 2 cut(s) 313, 1057
CciI TCATGA 1 cut(s) 591
CfoI GCGC 1 cut(s) 33
Cfr13I GGNCC 3 cut(s) 184, 323, 728
Csp6I GTAC 2 cut(s) 148, 615
CviAII CATG 6 cut(s) 94, 592, 763, 977, 1225, 1241
CviQI GTAC 2 cut(s) 148, 615
DpnI GATC 3 cut(s) 457, 773, 834
DpnII GATC 3 cut(s) 455, 771, 832
DriI GACNNNNNGTC 1 cut(s) 1176
EaeI YGGCCR 2 cut(s) 96, 1114
Eam1105I GACNNNNNGTC 1 cut(s) 1176
Ecl136II GAGCTC 1 cut(s) 368
Eco130I CCWWGG 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 370
Eco31I GGTCTC 1 cut(s) 131
Eco32I GATATC 1 cut(s) 1236
Eco47I GGWCC 3 cut(s) 184, 323, 728
Eco53kI GAGCTC 1 cut(s) 368
Eco57I CTGAAG 1 cut(s) 101
Eco81I CCTNAGG 1 cut(s) 300
Eco88I CYCGRG 2 cut(s) 41, 570
EcoICRI GAGCTC 1 cut(s) 368
EcoO109I RGGNCCY 2 cut(s) 184, 323
EcoRII CCWGG 2 cut(s) 128, 180
EcoRV GATATC 1 cut(s) 1236
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 370
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 6 cut(s) 97, 595, 766, 980, 1228, 1244
FaqI GGGAC 1 cut(s) 714
FatI CATG 6 cut(s) 93, 591, 762, 976, 1224, 1240
FauI CCCGC 1 cut(s) 476
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 1 cut(s) 170
FokI GGATG 4 cut(s) 272, 640, 824, 950
FriOI GRGCYC 1 cut(s) 370
Fsp4HI GCNGC 1 cut(s) 170
FspBI CTAG 7 cut(s) 245, 284, 618, 780, 836, 1035, 1166
GlaI GCGC 1 cut(s) 32
GluI GCNGC 1 cut(s) 170
GsaI CCCAGC 1 cut(s) 654
HaeIII GGCC 3 cut(s) 98, 380, 1116
HapII CCGG 2 cut(s) 55, 581
HhaI GCGC 1 cut(s) 33
Hin1II CATG 6 cut(s) 97, 595, 766, 980, 1228, 1244
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HinfI GANTC 8 cut(s) 7, 266, 539, 547, 677, 970, 987, 1264
HpaII CCGG 2 cut(s) 55, 581
HphI GGTGA 8 cut(s) 263, 286, 440, 707, 743, 863, 1021, 1140
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 8 cut(s) 12, 163, 361, 372, 552, 612, 803, 1012
Hpy188III TCNNGA 4 cut(s) 43, 592, 1155, 1181
Hpy8I GTNNAC 1 cut(s) 295
HpyAV CCTTC 5 cut(s) 526, 680, 689, 1152, 1161
HpyCH4III ACNGT 3 cut(s) 193, 879, 1192
HpyCH4V TGCA 7 cut(s) 444, 467, 762, 890, 1059, 1085, 1132
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
Hsp92II CATG 6 cut(s) 97, 595, 766, 980, 1228, 1244
HspAI GCGC 1 cut(s) 31
Kzo9I GATC 3 cut(s) 455, 771, 832
LmnI GCTCC 1 cut(s) 90
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 4 cut(s) 223, 314, 802, 1072
MaeI CTAG 7 cut(s) 245, 284, 618, 780, 836, 1035, 1166
MaeIII GTNAC 1 cut(s) 1168
MalI GATC 3 cut(s) 457, 773, 834
MboI GATC 3 cut(s) 455, 771, 832
MboII GAAGA 3 cut(s) 289, 409, 1117
MfeI CAATTG 2 cut(s) 407, 1110
MflI RGATCY 1 cut(s) 771
MhlI GDGCHC 1 cut(s) 370
MlsI TGGCCA 2 cut(s) 98, 1116
MluNI TGGCCA 2 cut(s) 98, 1116
MlyI GAGTC 4 cut(s) 260, 541, 548, 979
MmeI TCCRAC 1 cut(s) 640
Mox20I TGGCCA 2 cut(s) 98, 1116
MroXI GAANNNNTTC 1 cut(s) 991
MscI TGGCCA 2 cut(s) 98, 1116
MseI TTAA 3 cut(s) 423, 1005, 1212
MslI CAYNNNNRTG 2 cut(s) 596, 1229
Msp20I TGGCCA 2 cut(s) 98, 1116
MspI CCGG 2 cut(s) 55, 581
MspR9I CCNGG 3 cut(s) 130, 182, 582
MunI CAATTG 2 cut(s) 407, 1110
Mva1269I GAATGC 1 cut(s) 1132
MvaI CCWGG 2 cut(s) 130, 182
MwoI GCNNNNNNNGC 1 cut(s) 37
NciI CCSGG 1 cut(s) 582
NcoI CCATGG 1 cut(s) 93
NdeII GATC 3 cut(s) 455, 771, 832
NlaIII CATG 6 cut(s) 97, 595, 766, 980, 1228, 1244
NlaIV GGNNCC 3 cut(s) 186, 324, 730
NmuCI GTSAC 1 cut(s) 1168
NspI RCATGY 2 cut(s) 766, 1228
PaeR7I CTCGAG 1 cut(s) 41
PagI TCATGA 1 cut(s) 591
PasI CCCWGGG 1 cut(s) 129
PciI ACATGT 1 cut(s) 1224
PcsI WCGNNNNNNNCGW 1 cut(s) 1169
PctI GAATGC 1 cut(s) 1132
PdmI GAANNNNTTC 1 cut(s) 991
PfeI GAWTC 3 cut(s) 677, 987, 1264
PflMI CCANNNNNTGG 2 cut(s) 94, 725
PkrI GCNGC 1 cut(s) 171
PleI GAGTC 4 cut(s) 260, 541, 547, 978
PpsI GAGTC 4 cut(s) 260, 541, 547, 978
PpuMI RGGWCCY 2 cut(s) 184, 323
PscI ACATGT 1 cut(s) 1224
Psp124BI GAGCTC 1 cut(s) 370
Psp5II RGGWCCY 2 cut(s) 184, 323
Psp6I CCWGG 2 cut(s) 128, 180
PspFI CCCAGC 1 cut(s) 650
PspGI CCWGG 2 cut(s) 128, 180
PspN4I GGNNCC 3 cut(s) 186, 324, 730
PspPI GGNCC 3 cut(s) 184, 323, 728
PspPPI RGGWCCY 2 cut(s) 184, 323
PsuI RGATCY 1 cut(s) 771
RsaI GTAC 2 cut(s) 149, 616
RsaNI GTAC 2 cut(s) 148, 615
RseI CAYNNNNRTG 2 cut(s) 596, 1229
SacI GAGCTC 1 cut(s) 370
SaqAI TTAA 3 cut(s) 423, 1005, 1212
SatI GCNGC 1 cut(s) 170
Sau3AI GATC 3 cut(s) 455, 771, 832
Sau96I GGNCC 3 cut(s) 184, 323, 728
ScaI AGTACT 1 cut(s) 616
SchI GAGTC 4 cut(s) 260, 541, 548, 979
ScrFI CCNGG 3 cut(s) 130, 182, 582
SduI GDGCHC 1 cut(s) 370
SfaNI GCATC 4 cut(s) 223, 314, 802, 1072
Sfr274I CTCGAG 1 cut(s) 41
SinI GGWCC 3 cut(s) 184, 323, 728
SlaI CTCGAG 1 cut(s) 41
SmiMI CAYNNNNRTG 2 cut(s) 596, 1229
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
SpeI ACTAGT 3 cut(s) 617, 779, 1034
SsiI CCGC 3 cut(s) 351, 483, 974
SspMI CTAG 7 cut(s) 245, 284, 618, 780, 836, 1035, 1166
SstI GAGCTC 1 cut(s) 370
StyD4I CCNGG 3 cut(s) 128, 180, 580
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 3 cut(s) 193, 879, 1192
TaqI TCGA 1 cut(s) 42
TatI WGTACW 1 cut(s) 614
TfiI GAWTC 3 cut(s) 677, 987, 1264
Tru1I TTAA 3 cut(s) 423, 1005, 1212
Tru9I TTAA 3 cut(s) 423, 1005, 1212
TseFI GTSAC 1 cut(s) 1168
TseI GCWGC 1 cut(s) 169
Tsp45I GTSAC 1 cut(s) 1168
TspDTI ATGAA 1 cut(s) 608
Van91I CCANNNNNTGG 2 cut(s) 94, 725
VpaK11BI GGWCC 3 cut(s) 184, 323, 728
XapI RAATTY 3 cut(s) 431, 1015, 1091
XceI RCATGY 2 cut(s) 766, 1228
XhoI CTCGAG 1 cut(s) 41
XmiI GTMKAC 1 cut(s) 294
XmnI GAANNNNTTC 1 cut(s) 991
XspI CTAG 7 cut(s) 245, 284, 618, 780, 836, 1035, 1166
ZrmI AGTACT 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.