Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005127.1

Orthogroup ID

OG0005412

Physical Location & Seq

Genomic Coordinates Reverse (-)

44466 .. 46604

Gene Structure 2139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005127.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

atggcgattcggaaaatcacagactatgagcgcaagaggctcgagaacattcgtcgaaacgaggaattgatggcttccctgaagctccaatccatggccacccaactttctgcctcaaccaaacgccccagggttgactccaaacgcaagacacgggacccaactgttatcaggcgttctctacgcaccagaggattaccgcccgttgcgaaaggactaggtggtgatggtgatgatgactctgtggtgaagaccctagaatctgtagaccctgaggcatcggctctcaaattgggtcctcttagtatgagagatgtgtatagcggagtatcggatagagctctgattgaggccattttgggtgttgagaagaaaccccaattgggtttggaagttaaaggtgaatttgggggttgcaaggaggagagatcaagtggtgcatttaccttagtcggtggggttagttgtgatttgagtaagaaattaggaggagctgagagtgatttgaaggtggaatctttgactctgaatgaggagaatgtagcccgggttgtgccggggaatgtcatgcatgtgaggttttttccaagtactagtttgagaatggttgtggttggggattatgctgggaattttggattttggaatgttgattctaaggaaggggaggaaggtgggatctgtatgtatcgtccacattctggtcccatttcggggatttctattcaccaagattgcatgtcaaagatctttactagttgctatgatggatttatccgattgatggatgctgagaaagaggtgtttgatctagtatattcaagtggtaagactatatattctctcggtcaacagtcaaacaatgcaaagtgtttatacttcgctgagggtcgtggagatgtaagtatgttggacgagagaacaggaaacatctcagcccagtggagtccgcatgatgatataatcaattccatagattttaactcagagaactcaaacatcatcaccactagttcaacagatggaactgcctgcatttgggatttgagatgtgttgatgcagataaattcaaaagtttgaaaacaattggccacaaaagggctgtgtattctgcctacttctcgccttctggaaggtcactagtgacgacaagtgttgatgacagggttggtatatcaagtggagttaattttgaggacatatcaatgatatcccaacacaataaaggcggatggcttcctaagttcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

417

Amino Acids

45.72

Weight (kDa)

7.0

Isoelectric Point (pI)

48.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80710
fragaria_vesca	FvH4_1g01460 FvH4_1g01460 FvH4_1g01460 FvH4_1g01460
malus_domestica	MD02G1011700.v1.1 MD15G1157400.v1.1
prunus_persica	Prupe.7G257900_v2.0.a1 Prupe.7G257900_v2.0.a1
pyrus_communis	pycom02g01070 pycom02g01100 pycom15g14110
rosa_chinensis	RchiOBHm_Chr2g0086391
rosa_laevigata	RLG00000015754
rosa_multiflora	Rmu_co8091234.1_g000001 Rmu_co8291973.1_g000001 Rmu_sc0005127.1_g000007 Rmu_sc0005127.1_g000009 Rmu_sc0041620.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154620 Rroxscaffold_2G00154640
rosa_rugosa	Rorug01G0467000
rosa_samantha	Rh2AG017200 Rh2AG017500 Rh2BG017000 Rh2BG017200 Rh2CG018000 Rh2DG018700
rosa_wichuraiana	Rw2G001460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	94, 701
AccI	GTMKAC	1 cut(s)	267
AciI	CCGC	4 cut(s)	200, 324, 950, 1230
AclWI	GGATC	1 cut(s)	686
AcoI	YGGCCR	2 cut(s)	96, 1090
AcsI	RAATTY	3 cut(s)	404, 631, 1067
AcuI	CTGAAG	1 cut(s)	101
AfaI	GTAC	1 cut(s)	592
AfiI	CCNNNNNNNGG	8 cut(s)	94, 383, 701, 713, 714, 784, 1038, 1099
AgsI	TTSAA	6 cut(s)	508, 822, 1017, 1072, 1081, 1249
AhlI	ACTAGT	4 cut(s)	593, 755, 1010, 1141
AjnI	CCWGG	1 cut(s)	128
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AluBI	AGCT	3 cut(s)	85, 341, 494
AluI	AGCT	3 cut(s)	85, 341, 494
Alw21I	GWGCWC	1 cut(s)	343
AlwI	GGATC	1 cut(s)	686
Ama87I	CYCGRG	2 cut(s)	41, 546
AoxI	GGCC	3 cut(s)	96, 351, 1090
ApoI	RAATTY	3 cut(s)	404, 631, 1067
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	3 cut(s)	157, 296, 704
AsuC2I	CCSGG	3 cut(s)	547, 548, 558
AsuHPI	GGTGA	6 cut(s)	236, 242, 259, 413, 719, 997
AvaI	CYCGRG	2 cut(s)	41, 546
AvaII	GGWCC	3 cut(s)	157, 296, 704
AxyI	CCTNAGG	1 cut(s)	273
BalI	TGGCCA	2 cut(s)	98, 1092
BanII	GRGCYC	1 cut(s)	343
BbsI	GAAGAC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	343
BbvCI	CCTCAGC	1 cut(s)	885
BccI	CCATC	6 cut(s)	64, 221, 761, 778, 1016, 1227
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BciT130I	CCWGG	1 cut(s)	130
BcnI	CCSGG	3 cut(s)	547, 548, 558
BcuI	ACTAGT	4 cut(s)	593, 755, 1010, 1141
BfaI	CTAG	7 cut(s)	218, 257, 594, 756, 812, 1011, 1142
BfmI	CTRYAG	1 cut(s)	264
BglII	AGATCT	1 cut(s)	747
BmcAI	AGTACT	1 cut(s)	592
Bme1390I	CCNGG	4 cut(s)	130, 547, 548, 558
Bme18I	GGWCC	3 cut(s)	157, 296, 704
BmeT110I	CYCGRG	2 cut(s)	41, 546
BmgT120I	GGNCC	3 cut(s)	157, 296, 704
BmiI	GGNNCC	4 cut(s)	158, 159, 297, 706
BmrFI	CCNGG	4 cut(s)	130, 547, 548, 558
BmrI	ACTGGG	1 cut(s)	934
BmsI	GCATC	3 cut(s)	287, 778, 1048
BmuI	ACTGGG	1 cut(s)	934
BpiI	GAAGAC	1 cut(s)	257
Bpu10I	CCTNAGC	1 cut(s)	885
BpuMI	CCSGG	3 cut(s)	547, 548, 558
BsaJI	CCNNGG	5 cut(s)	93, 128, 129, 546, 557
Bsc4I	CCNNNNNNNGG	8 cut(s)	94, 383, 701, 713, 714, 784, 1038, 1099
Bse1I	ACTGG	1 cut(s)	940
Bse21I	CCTNAGG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	5 cut(s)	93, 128, 129, 546, 557
BseGI	GGATG	2 cut(s)	793, 1238
BseLI	CCNNNNNNNGG	8 cut(s)	94, 383, 701, 713, 714, 784, 1038, 1099
BseMII	CTCAG	6 cut(s)	264, 486, 783, 876, 948, 999
BseNI	ACTGG	1 cut(s)	940
BseRI	GAGGAG	3 cut(s)	437, 504, 548
BseYI	CCCAGC	1 cut(s)	626
BshFI	GGCC	3 cut(s)	98, 353, 1092
BsiHKAI	GWGCWC	1 cut(s)	343
BsiHKCI	CYCGRG	2 cut(s)	41, 546
BsiSI	CCGG	2 cut(s)	547, 557
BslFI	GGGAC	2 cut(s)	170, 690
BslI	CCNNNNNNNGG	8 cut(s)	94, 383, 701, 713, 714, 784, 1038, 1099
BsmFI	GGGAC	2 cut(s)	170, 690
BsnI	GGCC	3 cut(s)	98, 353, 1092
BsoBI	CYCGRG	2 cut(s)	41, 546
Bsp1286I	GDGCHC	1 cut(s)	343
Bsp143I	GATC	4 cut(s)	428, 678, 747, 808
Bsp19I	CCATGG	1 cut(s)	93
BspACI	CCGC	4 cut(s)	200, 324, 950, 1230
BspANI	GGCC	3 cut(s)	98, 353, 1092
BspCNI	CTCAG	6 cut(s)	265, 487, 784, 877, 947, 998
BspLI	GGNNCC	4 cut(s)	158, 159, 297, 706
BspPI	GGATC	1 cut(s)	686
BsrI	ACTGG	1 cut(s)	940
BssECI	CCNNGG	5 cut(s)	93, 128, 129, 546, 557
BssMI	GATC	4 cut(s)	428, 678, 747, 808
BssT1I	CCWWGG	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	2 cut(s)	166, 855
BstC8I	GCNNGC	1 cut(s)	1033
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	2 cut(s)	793, 1238
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	4 cut(s)	431, 681, 750, 811
BstMBI	GATC	4 cut(s)	428, 678, 747, 808
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNI	CCWGG	1 cut(s)	130
BstNSI	RCATGY	2 cut(s)	575, 742
BstSCI	CCNGG	4 cut(s)	128, 545, 546, 556
BstSFI	CTRYAG	1 cut(s)	264
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	2 cut(s)	678, 747
BstYI	RGATCY	2 cut(s)	678, 747
Bsu36I	CCTNAGG	1 cut(s)	273
BsuRI	GGCC	3 cut(s)	98, 353, 1092
BtgI	CCRYGG	1 cut(s)	93
BtsCI	GGATG	2 cut(s)	793, 1238
BtsIMutI	CAGTG	1 cut(s)	947
Cac8I	GCNNGC	1 cut(s)	1033
CfoI	GCGC	1 cut(s)	33
Cfr13I	GGNCC	3 cut(s)	157, 296, 704
Cfr9I	CCCGGG	1 cut(s)	546
Csp6I	GTAC	1 cut(s)	591
CviAII	CATG	5 cut(s)	94, 568, 572, 739, 953
CviQI	GTAC	1 cut(s)	591
DpnI	GATC	4 cut(s)	430, 680, 749, 810
DpnII	GATC	4 cut(s)	428, 678, 747, 808
EaeI	YGGCCR	2 cut(s)	96, 1090
EciI	GGCGGA	1 cut(s)	1245
Ecl136II	GAGCTC	1 cut(s)	341
Eco130I	CCWWGG	1 cut(s)	93
Eco24I	GRGCYC	1 cut(s)	343
Eco32I	GATATC	1 cut(s)	1212
Eco47I	GGWCC	3 cut(s)	157, 296, 704
Eco53kI	GAGCTC	1 cut(s)	341
Eco57I	CTGAAG	1 cut(s)	101
Eco81I	CCTNAGG	1 cut(s)	273
Eco88I	CYCGRG	2 cut(s)	41, 546
EcoICRI	GAGCTC	1 cut(s)	341
EcoO109I	RGGNCCY	2 cut(s)	157, 296
EcoRII	CCWGG	1 cut(s)	128
EcoRV	GATATC	1 cut(s)	1212
EcoT14I	CCWWGG	1 cut(s)	93
EcoT22I	ATGCAT	1 cut(s)	573
EcoT38I	GRGCYC	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	5 cut(s)	97, 571, 575, 742, 956
FaqI	GGGAC	2 cut(s)	170, 690
FatI	CATG	5 cut(s)	93, 567, 571, 738, 952
FblI	GTMKAC	1 cut(s)	267
FokI	GGATG	2 cut(s)	800, 1245
FriOI	GRGCYC	1 cut(s)	343
FspBI	CTAG	7 cut(s)	218, 257, 594, 756, 812, 1011, 1142
GlaI	GCGC	1 cut(s)	32
GsaI	CCCAGC	1 cut(s)	630
HaeIII	GGCC	3 cut(s)	98, 353, 1092
HapII	CCGG	2 cut(s)	547, 557
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	5 cut(s)	97, 571, 575, 742, 956
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HincII	GTYRAC	2 cut(s)	136, 851
HindII	GTYRAC	2 cut(s)	136, 851
HinfI	GANTC	8 cut(s)	7, 137, 239, 260, 515, 523, 653, 946
HpaII	CCGG	2 cut(s)	547, 557
HphI	GGTGA	6 cut(s)	236, 242, 259, 413, 719, 997
Hpy166II	GTNNAC	4 cut(s)	136, 268, 695, 851
Hpy188I	TCNGA	6 cut(s)	12, 334, 345, 528, 779, 988
Hpy188III	TCNNGA	2 cut(s)	43, 1131
Hpy8I	GTNNAC	4 cut(s)	136, 268, 695, 851
Hpy99I	CGWCG	1 cut(s)	57
HpyAV	CCTTC	5 cut(s)	502, 656, 665, 1128, 1137
HpyCH4III	ACNGT	2 cut(s)	166, 855
HpyCH4V	TGCA	7 cut(s)	417, 440, 571, 738, 866, 1035, 1061
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
Hsp92II	CATG	5 cut(s)	97, 571, 575, 742, 956
HspAI	GCGC	1 cut(s)	31
KflI	GGGWCCC	1 cut(s)	157
Kzo9I	GATC	4 cut(s)	428, 678, 747, 808
LmnI	GCTCC	2 cut(s)	90, 491
LweI	GCATC	3 cut(s)	287, 778, 1048
MaeI	CTAG	7 cut(s)	218, 257, 594, 756, 812, 1011, 1142
MaeIII	GTNAC	2 cut(s)	1137, 1144
MalI	GATC	4 cut(s)	430, 680, 749, 810
MboI	GATC	4 cut(s)	428, 678, 747, 808
MboII	GAAGA	2 cut(s)	262, 382
MfeI	CAATTG	2 cut(s)	380, 1086
MflI	RGATCY	2 cut(s)	678, 747
MhlI	GDGCHC	1 cut(s)	343
MlsI	TGGCCA	2 cut(s)	98, 1092
MluNI	TGGCCA	2 cut(s)	98, 1092
MlyI	GAGTC	4 cut(s)	131, 233, 517, 955
MmeI	TCCRAC	1 cut(s)	891
Mox20I	TGGCCA	2 cut(s)	98, 1092
Mph1103I	ATGCAT	1 cut(s)	573
MscI	TGGCCA	2 cut(s)	98, 1092
MseI	TTAA	3 cut(s)	396, 981, 1188
MslI	CAYNNNNRTG	2 cut(s)	572, 1205
Msp20I	TGGCCA	2 cut(s)	98, 1092
MspI	CCGG	2 cut(s)	547, 557
MspR9I	CCNGG	4 cut(s)	130, 547, 548, 558
MunI	CAATTG	2 cut(s)	380, 1086
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	1 cut(s)	37
NciI	CCSGG	3 cut(s)	547, 548, 558
NcoI	CCATGG	1 cut(s)	93
NdeII	GATC	4 cut(s)	428, 678, 747, 808
NlaIII	CATG	5 cut(s)	97, 571, 575, 742, 956
NlaIV	GGNNCC	4 cut(s)	158, 159, 297, 706
NmuCI	GTSAC	2 cut(s)	1137, 1144
NsiI	ATGCAT	1 cut(s)	573
NspI	RCATGY	2 cut(s)	575, 742
PaeR7I	CTCGAG	1 cut(s)	41
PasI	CCCWGGG	1 cut(s)	129
PfeI	GAWTC	4 cut(s)	7, 260, 515, 653
PflMI	CCANNNNNTGG	2 cut(s)	94, 701
PleI	GAGTC	4 cut(s)	131, 233, 517, 954
PpsI	GAGTC	4 cut(s)	131, 233, 517, 954
PpuMI	RGGWCCY	2 cut(s)	157, 296
Psp124BI	GAGCTC	1 cut(s)	343
Psp5II	RGGWCCY	2 cut(s)	157, 296
Psp6I	CCWGG	1 cut(s)	128
PspFI	CCCAGC	1 cut(s)	626
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	4 cut(s)	158, 159, 297, 706
PspPI	GGNCC	3 cut(s)	157, 296, 704
PspPPI	RGGWCCY	2 cut(s)	157, 296
PsuI	RGATCY	2 cut(s)	678, 747
RsaI	GTAC	1 cut(s)	592
RsaNI	GTAC	1 cut(s)	591
RseI	CAYNNNNRTG	2 cut(s)	572, 1205
SacI	GAGCTC	1 cut(s)	343
SaqAI	TTAA	3 cut(s)	396, 981, 1188
Sau3AI	GATC	4 cut(s)	428, 678, 747, 808
Sau96I	GGNCC	3 cut(s)	157, 296, 704
ScaI	AGTACT	1 cut(s)	592
SchI	GAGTC	4 cut(s)	131, 233, 517, 955
ScrFI	CCNGG	4 cut(s)	130, 547, 548, 558
SduI	GDGCHC	1 cut(s)	343
SfaNI	GCATC	3 cut(s)	287, 778, 1048
SfcI	CTRYAG	1 cut(s)	264
Sfr274I	CTCGAG	1 cut(s)	41
SinI	GGWCC	3 cut(s)	157, 296, 704
SlaI	CTCGAG	1 cut(s)	41
SmaI	CCCGGG	1 cut(s)	548
SmiMI	CAYNNNNRTG	2 cut(s)	572, 1205
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
SpeI	ACTAGT	4 cut(s)	593, 755, 1010, 1141
SsiI	CCGC	4 cut(s)	200, 324, 950, 1230
SspMI	CTAG	7 cut(s)	218, 257, 594, 756, 812, 1011, 1142
SstI	GAGCTC	1 cut(s)	343
StyD4I	CCNGG	4 cut(s)	128, 545, 546, 556
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	2 cut(s)	166, 855
TaqI	TCGA	2 cut(s)	42, 55
TaqII	GACCGA	1 cut(s)	836
TatI	WGTACW	1 cut(s)	590
TfiI	GAWTC	4 cut(s)	7, 260, 515, 653
Tru1I	TTAA	3 cut(s)	396, 981, 1188
Tru9I	TTAA	3 cut(s)	396, 981, 1188
TscAI	CASTG	1 cut(s)	947
TseFI	GTSAC	2 cut(s)	1137, 1144
Tsp45I	GTSAC	2 cut(s)	1137, 1144
TspMI	CCCGGG	1 cut(s)	546
TspRI	CASTG	1 cut(s)	947
Van91I	CCANNNNNTGG	2 cut(s)	94, 701
VpaK11BI	GGWCC	3 cut(s)	157, 296, 704
XapI	RAATTY	3 cut(s)	404, 631, 1067
XceI	RCATGY	2 cut(s)	575, 742
XhoI	CTCGAG	1 cut(s)	41
XmaI	CCCGGG	1 cut(s)	546
XmiI	GTMKAC	1 cut(s)	267
XspI	CTAG	7 cut(s)	218, 257, 594, 756, 812, 1011, 1142
ZrmI	AGTACT	1 cut(s)	592
Zsp2I	ATGCAT	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.