Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005412

Physical Location & Seq

Genomic Coordinates Forward (+)

611038 .. 612193

Gene Structure 1156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g01070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCGACTGAGAAACTCACAGAGTACGAGCGCAAGAGGCTCGAGAACATCCTACGGAACGACGAAATGATGTCTTCCCTCAAGCTCCAATCCATCAAAGCCCATGTCTCTGCCTCCACCAAACGCCCAAGGTTCTTTCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATGTGTGTGTGTGTGTACATCTATGGTAAAATCATGATTTTCTCGAAAACCCCGTTTCTAATATCTGGTTATAATTGTAGGGTCGATACCAAATCGTACAAAGTTAGTCCGAAGAAACAACCCAAAACCCAGACCCCAATTGTCATGAGGCGGTCTTTACGCACGCGCGGGTTACCGCCCGATGCGAAGGGCCTAAGCCATGAGGCTCTGGAATCCATGGCCAAAACCCCGAAATCTTCGAGCCCATCGAAGGGGTTGCCTCGCTATTTGGGTCCTCTTAGCATGAAAGATGCTTACAGCGGAGTGTCAGATCGAGCTCTAATGGAAGCAATTCTGGATATTTCGAAGAAGCCCCAATTGGATGCTTCAGTGAAAGGTGAAATTAAAGGCGAAAATGGCGGATTTGAGGGTGGCAAAGGTGAGAGCTTTTCGATTAAGGAAGAAAATGAAGTTGAAATTGGTGAGAAGACAGAGCCTTTGAGTGAGGGAATTGGTGGGTTTACTTGTGGTTTGGTTAAGAAGGAAGAAAATGAAGTGTGGAGTAGTTTAAAGTTAGAGTCTTTGACTCTAAAACCGGAGAATGTAGCGAGGGTTGTGCCCGGCAGGATTATGAATGTGAAGTTTTTTCCTTGTACTGGTTCGAATATGATTGCGGTTGGAAATAAGTATGGGAATGCAGGAAATAAACATGTTGGAATAATGTTAGGCTACAAATTAGGTAAGTTAGGCAAAATTAGGCTTATGATCTTTTTCTTCCCTATATATATGTTTCATCTTGTAATTAGCCAAGTCGGTCAGGGATCGTTCTTGGTAGAGCATTGGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

338

Amino Acids

37.49

Weight (kDa)

9.55

Isoelectric Point (pI)

34.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80710
fragaria_vesca	FvH4_1g01460 FvH4_1g01460 FvH4_1g01460 FvH4_1g01460
malus_domestica	MD02G1011700.v1.1 MD15G1157400.v1.1
prunus_persica	Prupe.7G257900_v2.0.a1 Prupe.7G257900_v2.0.a1
pyrus_communis	pycom02g01070 pycom02g01100 pycom15g14110
rosa_chinensis	RchiOBHm_Chr2g0086391
rosa_laevigata	RLG00000015754
rosa_multiflora	Rmu_co8091234.1_g000001 Rmu_co8291973.1_g000001 Rmu_sc0005127.1_g000007 Rmu_sc0005127.1_g000009 Rmu_sc0041620.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154620 Rroxscaffold_2G00154640
rosa_rugosa	Rorug01G0467000
rosa_samantha	Rh2AG017200 Rh2AG017500 Rh2BG017000 Rh2BG017200 Rh2CG018000 Rh2DG018700
rosa_wichuraiana	Rw2G001460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	258
AccII	CGCG	2 cut(s)	352, 354
AciI	CCGC	6 cut(s)	337, 354, 362, 486, 585, 839
AclWI	GGATC	1 cut(s)	994
AcoI	YGGCCR	1 cut(s)	405
AcuI	CTGAAG	1 cut(s)	537
AfaI	GTAC	4 cut(s)	26, 203, 284, 820
AfiI	CCNNNNNNNGG	3 cut(s)	436, 437, 821
AflIII	ACRYGT	1 cut(s)	874
AgsI	TTSAA	1 cut(s)	641
AjuI	GAANNNNNNNTTGG	4 cut(s)	527, 559, 627, 659
AluBI	AGCT	3 cut(s)	85, 503, 612
AluI	AGCT	3 cut(s)	85, 503, 612
Alw21I	GWGCWC	1 cut(s)	505
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	1 cut(s)	994
Ama87I	CYCGRG	1 cut(s)	41
AoxI	GGCC	2 cut(s)	376, 405
ArsI	GACNNNNNNTTYG	4 cut(s)	90, 122, 646, 678
Asp700I	GAANNNNTTC	1 cut(s)	516
AspLEI	GCGC	2 cut(s)	33, 354
AspS9I	GGNCC	2 cut(s)	376, 458
AsuC2I	CCSGG	1 cut(s)	786
AsuHPI	GGTGA	3 cut(s)	575, 617, 659
AsuII	TTCGAA	2 cut(s)	530, 827
AvaI	CYCGRG	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	458
BaeGI	GKGCMC	1 cut(s)	786
BalI	TGGCCA	1 cut(s)	407
BanII	GRGCYC	2 cut(s)	431, 505
BbsI	GAAGAC	2 cut(s)	66, 659
Bbv12I	GWGCWC	1 cut(s)	505
BccI	CCATC	2 cut(s)	101, 439
BcgI	CGANNNNNNTGC	6 cut(s)	22, 56, 424, 458, 763, 797
BcnI	CCSGG	1 cut(s)	786
BcoDI	GTCTC	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	786
Bme18I	GGWCC	1 cut(s)	458
BmeT110I	CYCGRG	1 cut(s)	41
BmgT120I	GGNCC	2 cut(s)	376, 458
BmiI	GGNNCC	1 cut(s)	459
BmrFI	CCNGG	1 cut(s)	786
BmsI	GCATC	3 cut(s)	358, 466, 538
BpiI	GAAGAC	2 cut(s)	66, 659
Bpu10I	CCTNAGC	1 cut(s)	380
Bpu14I	TTCGAA	2 cut(s)	530, 827
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	786
BsaJI	CCNNGG	2 cut(s)	128, 402
BsaWI	WCCGGW	1 cut(s)	760
Bsc4I	CCNNNNNNNGG	3 cut(s)	436, 437, 821
Bse1I	ACTGG	1 cut(s)	826
BseDI	CCNNGG	2 cut(s)	128, 402
BseGI	GGATG	2 cut(s)	48, 553
BseLI	CCNNNNNNNGG	3 cut(s)	436, 437, 821
BseNI	ACTGG	1 cut(s)	826
BseSI	GKGCMC	1 cut(s)	786
Bsh1236I	CGCG	2 cut(s)	352, 354
BshFI	GGCC	2 cut(s)	378, 407
BsiHKAI	GWGCWC	1 cut(s)	505
BsiHKCI	CYCGRG	1 cut(s)	41
BsiSI	CCGG	2 cut(s)	761, 786
BslI	CCNNNNNNNGG	3 cut(s)	436, 437, 821
BsmAI	GTCTC	1 cut(s)	112
BsmI	GAATGC	1 cut(s)	865
BsnI	GGCC	2 cut(s)	378, 407
BsoBI	CYCGRG	1 cut(s)	41
Bsp119I	TTCGAA	2 cut(s)	530, 827
Bsp1286I	GDGCHC	3 cut(s)	431, 505, 786
Bsp1407I	TGTACA	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	496, 930, 986
Bsp19I	CCATGG	1 cut(s)	402
BspACI	CCGC	6 cut(s)	337, 354, 362, 486, 585, 839
BspANI	GGCC	2 cut(s)	378, 407
BspFNI	CGCG	2 cut(s)	352, 354
BspHI	TCATGA	2 cut(s)	219, 330
BspLI	GGNNCC	1 cut(s)	459
BspPI	GGATC	1 cut(s)	994
BspT104I	TTCGAA	2 cut(s)	530, 827
BsrGI	TGTACA	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	826
BssECI	CCNNGG	2 cut(s)	128, 402
BssMI	GATC	3 cut(s)	496, 930, 986
BssT1I	CCWWGG	2 cut(s)	128, 402
BstAUI	TGTACA	1 cut(s)	201
BstBI	TTCGAA	2 cut(s)	530, 827
BstC8I	GCNNGC	1 cut(s)	350
BstDEI	CTNAG	3 cut(s)	9, 380, 464
BstDSI	CCRYGG	1 cut(s)	402
BstEII	GGTNACC	1 cut(s)	357
BstF5I	GGATG	2 cut(s)	48, 553
BstFNI	CGCG	2 cut(s)	352, 354
BstHHI	GCGC	2 cut(s)	33, 354
BstKTI	GATC	3 cut(s)	499, 933, 989
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	3 cut(s)	496, 930, 986
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 582
BstNSI	RCATGY	1 cut(s)	878
BstPI	GGTNACC	1 cut(s)	357
BstSCI	CCNGG	1 cut(s)	784
BstSLI	GKGCMC	1 cut(s)	786
BstUI	CGCG	2 cut(s)	352, 354
BstV2I	GAAGAC	2 cut(s)	66, 659
BsuRI	GGCC	2 cut(s)	378, 407
BtgI	CCRYGG	1 cut(s)	402
BtsCI	GGATG	2 cut(s)	48, 553
BtsIMutI	CAGTG	1 cut(s)	561
Cac8I	GCNNGC	1 cut(s)	350
CciI	TCATGA	2 cut(s)	219, 330
CfoI	GCGC	2 cut(s)	33, 354
Cfr13I	GGNCC	2 cut(s)	376, 458
Csp6I	GTAC	4 cut(s)	25, 202, 283, 819
CviAII	CATG	7 cut(s)	104, 220, 331, 386, 403, 469, 875
CviQI	GTAC	4 cut(s)	25, 202, 283, 819
DdeI	CTNAG	3 cut(s)	9, 380, 464
DpnI	GATC	3 cut(s)	498, 932, 988
DpnII	GATC	3 cut(s)	496, 930, 986
DraI	TTTAAA	1 cut(s)	735
EaeI	YGGCCR	1 cut(s)	405
EciI	GGCGGA	1 cut(s)	600
Ecl136II	GAGCTC	1 cut(s)	503
Eco130I	CCWWGG	2 cut(s)	128, 402
Eco24I	GRGCYC	2 cut(s)	431, 505
Eco47I	GGWCC	1 cut(s)	458
Eco53kI	GAGCTC	1 cut(s)	503
Eco57I	CTGAAG	1 cut(s)	537
Eco88I	CYCGRG	1 cut(s)	41
Eco91I	GGTNACC	1 cut(s)	357
EcoICRI	GAGCTC	1 cut(s)	503
EcoO109I	RGGNCCY	2 cut(s)	376, 458
EcoO65I	GGTNACC	1 cut(s)	357
EcoT14I	CCWWGG	2 cut(s)	128, 402
EcoT38I	GRGCYC	2 cut(s)	431, 505
ErhI	CCWWGG	2 cut(s)	128, 402
FaeI	CATG	7 cut(s)	107, 223, 334, 389, 406, 472, 878
FatI	CATG	7 cut(s)	103, 219, 330, 385, 402, 468, 874
FauI	CCCGC	1 cut(s)	347
FokI	GGATG	2 cut(s)	35, 560
FriOI	GRGCYC	2 cut(s)	431, 505
GlaI	GCGC	2 cut(s)	32, 353
HaeIII	GGCC	2 cut(s)	378, 407
HapII	CCGG	2 cut(s)	761, 786
HhaI	GCGC	2 cut(s)	33, 354
Hin1II	CATG	7 cut(s)	107, 223, 334, 389, 406, 472, 878
Hin6I	GCGC	2 cut(s)	31, 352
HinP1I	GCGC	2 cut(s)	31, 352
HinfI	GANTC	3 cut(s)	398, 743, 751
HpaII	CCGG	2 cut(s)	761, 786
HphI	GGTGA	3 cut(s)	575, 617, 659
Hpy166II	GTNNAC	2 cut(s)	202, 687
Hpy188I	TCNGA	2 cut(s)	297, 496
Hpy188III	TCNNGA	6 cut(s)	43, 220, 229, 331, 395, 521
Hpy8I	GTNNAC	2 cut(s)	202, 687
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	3 cut(s)	367, 430, 700
HpyCH4V	TGCA	1 cut(s)	863
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 582
HpyF3I	CTNAG	3 cut(s)	9, 380, 464
Hsp92II	CATG	7 cut(s)	107, 223, 334, 389, 406, 472, 878
HspAI	GCGC	2 cut(s)	31, 352
Kzo9I	GATC	3 cut(s)	496, 930, 986
LmnI	GCTCC	1 cut(s)	90
LweI	GCATC	3 cut(s)	358, 466, 538
MaeIII	GTNAC	1 cut(s)	357
MalI	GATC	3 cut(s)	498, 932, 988
MboI	GATC	3 cut(s)	496, 930, 986
MboII	GAAGA	8 cut(s)	66, 310, 414, 544, 638, 664, 722, 931
MfeI	CAATTG	2 cut(s)	324, 542
MhlI	GDGCHC	3 cut(s)	431, 505, 786
MlsI	TGGCCA	1 cut(s)	407
MluNI	TGGCCA	1 cut(s)	407
MlyI	GAGTC	2 cut(s)	745, 752
MmeI	TCCRAC	2 cut(s)	823, 859
Mox20I	TGGCCA	1 cut(s)	407
MroXI	GAANNNNTTC	1 cut(s)	516
MscI	TGGCCA	1 cut(s)	407
MseI	TTAA	4 cut(s)	570, 621, 702, 734
Msp20I	TGGCCA	1 cut(s)	407
MspA1I	CMGCKG	1 cut(s)	486
MspI	CCGG	2 cut(s)	761, 786
MspR9I	CCNGG	1 cut(s)	786
MunI	CAATTG	2 cut(s)	324, 542
Mva1269I	GAATGC	1 cut(s)	865
MvnI	CGCG	2 cut(s)	352, 354
MwoI	GCNNNNNNNGC	2 cut(s)	37, 582
NciI	CCSGG	1 cut(s)	786
NcoI	CCATGG	1 cut(s)	402
NdeII	GATC	3 cut(s)	496, 930, 986
NlaIII	CATG	7 cut(s)	107, 223, 334, 389, 406, 472, 878
NlaIV	GGNNCC	1 cut(s)	459
NspI	RCATGY	1 cut(s)	878
NspV	TTCGAA	2 cut(s)	530, 827
PaeR7I	CTCGAG	1 cut(s)	41
PagI	TCATGA	2 cut(s)	219, 330
PciI	ACATGT	1 cut(s)	874
PcsI	WCGNNNNNNNCGW	2 cut(s)	236, 431
PctI	GAATGC	1 cut(s)	865
PdmI	GAANNNNTTC	1 cut(s)	516
PfeI	GAWTC	1 cut(s)	398
PleI	GAGTC	2 cut(s)	745, 751
PpsI	GAGTC	2 cut(s)	745, 751
PpuMI	RGGWCCY	1 cut(s)	458
PscI	ACATGT	1 cut(s)	874
PsiI	TTATAA	1 cut(s)	258
Psp124BI	GAGCTC	1 cut(s)	505
Psp5II	RGGWCCY	1 cut(s)	458
PspEI	GGTNACC	1 cut(s)	357
PspN4I	GGNNCC	1 cut(s)	459
PspPI	GGNCC	2 cut(s)	376, 458
PspPPI	RGGWCCY	1 cut(s)	458
RsaI	GTAC	4 cut(s)	26, 203, 284, 820
RsaNI	GTAC	4 cut(s)	25, 202, 283, 819
SacI	GAGCTC	1 cut(s)	505
SaqAI	TTAA	4 cut(s)	570, 621, 702, 734
Sau3AI	GATC	3 cut(s)	496, 930, 986
Sau96I	GGNCC	2 cut(s)	376, 458
SchI	GAGTC	2 cut(s)	745, 752
ScrFI	CCNGG	1 cut(s)	786
SduI	GDGCHC	3 cut(s)	431, 505, 786
SetI	ASST	7 cut(s)	87, 134, 505, 565, 607, 614, 907
SfaNI	GCATC	3 cut(s)	358, 466, 538
Sfr274I	CTCGAG	1 cut(s)	41
SfuI	TTCGAA	2 cut(s)	530, 827
SinI	GGWCC	1 cut(s)	458
SlaI	CTCGAG	1 cut(s)	41
SmlI	CTYRAG	2 cut(s)	41, 80
SmoI	CTYRAG	2 cut(s)	41, 80
SsiI	CCGC	6 cut(s)	337, 354, 362, 486, 585, 839
SstI	GAGCTC	1 cut(s)	505
StyD4I	CCNGG	1 cut(s)	784
StyI	CCWWGG	2 cut(s)	128, 402
TaqI	TCGA	9 cut(s)	42, 230, 270, 425, 434, 499, 530, 617, 827
TaqII	GACCGA	1 cut(s)	968
TatI	WGTACW	2 cut(s)	201, 818
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	4 cut(s)	570, 621, 702, 734
Tru9I	TTAA	4 cut(s)	570, 621, 702, 734
TscAI	CASTG	1 cut(s)	561
TspDTI	ATGAA	5 cut(s)	485, 648, 732, 812, 947
TspGWI	ACGGA	1 cut(s)	70
TspRI	CASTG	1 cut(s)	561
VpaK11BI	GGWCC	1 cut(s)	458
XceI	RCATGY	1 cut(s)	878
XhoI	CTCGAG	1 cut(s)	41
XmnI	GAANNNNTTC	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.