Rmu_sc0041620.1_g000001

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0041620.1
OG0005412
Physical Location & Seq
Reverse (-)
2 .. 376
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0041620.1_g000001.1.cds

Sequence Viewer

Length: 257 bp
atggcgactcagaaactcacagactatgagcgcaagaggctcgagaacattcgccggaacgaggaattgatggcttccctgaagctccaatccatggccacccaactctctgcctcaaccaaacgccccagggttgagaccaaatcgtacaaggtcaattcggagaagcagcccaagacccaggacccaactgttatcaggcgttctctacgcaccagaggattaccacccgatgcgaaagaactaggtggtgatgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

86

Amino Acids

9.83

Weight (kDa)

10.22

Isoelectric Point (pI)

69.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 94
AcoI YGGCCR 1 cut(s) 96
AcuI CTGAAG 1 cut(s) 101
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 2 cut(s) 61, 94
AjnI CCWGG 2 cut(s) 128, 180
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
Alw26I GTCTC 1 cut(s) 131
Ama87I CYCGRG 1 cut(s) 41
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 169
AspLEI GCGC 1 cut(s) 33
AspS9I GGNCC 1 cut(s) 184
AvaI CYCGRG 1 cut(s) 41
AvaII GGWCC 1 cut(s) 184
BalI TGGCCA 1 cut(s) 98
BbvI GCAGC 1 cut(s) 181
BccI CCATC 2 cut(s) 64, 248
BcgI CGANNNNNNTGC 2 cut(s) 22, 56
BciT130I CCWGG 2 cut(s) 130, 182
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 1 cut(s) 245
BisI GCNGC 1 cut(s) 170
BlsI GCNGC 1 cut(s) 171
Bme1390I CCNGG 2 cut(s) 130, 182
Bme18I GGWCC 1 cut(s) 184
BmeT110I CYCGRG 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 184
BmiI GGNNCC 1 cut(s) 186
BmrFI CCNGG 2 cut(s) 130, 182
BmsI GCATC 1 cut(s) 223
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 4 cut(s) 93, 128, 129, 180
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 94
BseBI CCWGG 2 cut(s) 130, 182
BseDI CCNNGG 4 cut(s) 93, 128, 129, 180
BseLI CCNNNNNNNGG 2 cut(s) 61, 94
BseMII CTCAG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 181
BshFI GGCC 1 cut(s) 98
BsiHKCI CYCGRG 1 cut(s) 41
BsiSI CCGG 1 cut(s) 55
BslI CCNNNNNNNGG 2 cut(s) 61, 94
BsmAI GTCTC 1 cut(s) 131
BsnI GGCC 1 cut(s) 98
Bso31I GGTCTC 1 cut(s) 131
BsoBI CYCGRG 1 cut(s) 41
Bsp19I CCATGG 1 cut(s) 93
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 1 cut(s) 22
BspLI GGNNCC 1 cut(s) 186
BspTNI GGTCTC 1 cut(s) 131
BssECI CCNNGG 4 cut(s) 93, 128, 129, 180
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 2 cut(s) 130, 182
Bst4CI ACNGT 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 9
BstDSI CCRYGG 1 cut(s) 93
BstHHI GCGC 1 cut(s) 33
BstMAI GTCTC 1 cut(s) 131
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 2 cut(s) 130, 182
BstSCI CCNGG 2 cut(s) 128, 180
BstV1I GCAGC 1 cut(s) 181
BsuRI GGCC 1 cut(s) 98
BtgI CCRYGG 1 cut(s) 93
CfoI GCGC 1 cut(s) 33
Cfr13I GGNCC 1 cut(s) 184
Csp6I GTAC 1 cut(s) 148
CviAII CATG 1 cut(s) 94
CviJI RGCY 5 cut(s) 40, 74, 85, 98, 172
CviKI_1 RGCY 5 cut(s) 40, 74, 85, 98, 172
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 1 cut(s) 9
EaeI YGGCCR 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 93
Eco31I GGTCTC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 184
Eco57I CTGAAG 1 cut(s) 101
Eco88I CYCGRG 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 184
EcoRII CCWGG 2 cut(s) 128, 180
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 1 cut(s) 97
FaiI YATR 2 cut(s) 27, 95
FatI CATG 1 cut(s) 93
Fnu4HI GCNGC 1 cut(s) 170
Fsp4HI GCNGC 1 cut(s) 170
FspBI CTAG 1 cut(s) 245
GlaI GCGC 1 cut(s) 32
GluI GCNGC 1 cut(s) 170
HaeIII GGCC 1 cut(s) 98
HapII CCGG 1 cut(s) 55
HhaI GCGC 1 cut(s) 33
Hin1II CATG 1 cut(s) 97
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HinfI GANTC 1 cut(s) 7
HpaII CCGG 1 cut(s) 55
Hpy188I TCNGA 2 cut(s) 12, 163
Hpy188III TCNNGA 1 cut(s) 43
HpyCH4III ACNGT 1 cut(s) 193
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 1 cut(s) 9
Hsp92II CATG 1 cut(s) 97
HspAI GCGC 1 cut(s) 31
LmnI GCTCC 1 cut(s) 90
LpnPI CCDG 8 cut(s) 68, 92, 115, 142, 167, 184, 194, 229
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 1 cut(s) 223
MaeI CTAG 1 cut(s) 245
MlsI TGGCCA 1 cut(s) 98
MluCI AATT 2 cut(s) 65, 157
MluNI TGGCCA 1 cut(s) 98
MnlI CCTC 4 cut(s) 30, 55, 124, 212
Mox20I TGGCCA 1 cut(s) 98
MscI TGGCCA 1 cut(s) 98
Msp20I TGGCCA 1 cut(s) 98
MspI CCGG 1 cut(s) 55
MspR9I CCNGG 2 cut(s) 130, 182
MvaI CCWGG 2 cut(s) 130, 182
MwoI GCNNNNNNNGC 1 cut(s) 37
NcoI CCATGG 1 cut(s) 93
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 1 cut(s) 186
PaeR7I CTCGAG 1 cut(s) 41
PasI CCCWGGG 1 cut(s) 129
PflMI CCANNNNNTGG 1 cut(s) 94
PkrI GCNGC 1 cut(s) 171
PpuMI RGGWCCY 1 cut(s) 184
Psp5II RGGWCCY 1 cut(s) 184
Psp6I CCWGG 2 cut(s) 128, 180
PspGI CCWGG 2 cut(s) 128, 180
PspN4I GGNNCC 1 cut(s) 186
PspPI GGNCC 1 cut(s) 184
PspPPI RGGWCCY 1 cut(s) 184
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SatI GCNGC 1 cut(s) 170
Sau96I GGNCC 1 cut(s) 184
ScrFI CCNGG 2 cut(s) 130, 182
SetI ASST 3 cut(s) 87, 156, 250
SfaNI GCATC 1 cut(s) 223
Sfr274I CTCGAG 1 cut(s) 41
SinI GGWCC 1 cut(s) 184
SlaI CTCGAG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 2 cut(s) 65, 157
SspMI CTAG 1 cut(s) 245
StyD4I CCNGG 2 cut(s) 128, 180
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 193
TaqI TCGA 1 cut(s) 42
TasI AATT 2 cut(s) 65, 157
TseI GCWGC 1 cut(s) 169
Van91I CCANNNNNTGG 1 cut(s) 94
VpaK11BI GGWCC 1 cut(s) 184
XhoI CTCGAG 1 cut(s) 41
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.