Rmu_co8318751.1_g000001

ATPase 8, plasma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8318751.1
OG0011636
Physical Location & Seq
Reverse (-)
1 .. 897
897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8318751.1_g000001.1.cds

Sequence Viewer

Length: 678 bp
atgcaggagaaaatcccggtggaggaagtgttcgagcagctgaaatgctcgaaggaggggttgagctcagaggagggcacgaagaggatccaggttttcggcccgaataagctcgaggaaaagaaagagagcaaggttctcaagttcctcgggttcatgtggaatcccttatcatgggtgatggaggctgctgcaatcatggccattgttttggccaatggagggggaaagcctccggattggccagacttcgtcggtattgtggtgcttctgatcatcaactcaactatatcattcatcgaagagaacaatgccggcaacgctgctgcggctctgatggctagtctagcccccaagaccaaggtgttacgggatggaaaatggggtgagcaagaggcagaaattttggtaccaggggatgtgattagcatcaagttgggagatatagtcccagctgatgctcgtctcctggagggcgatcccttaaagattgaccaagctgctctcaccggtgaatccctaccggtcaccaggcaccccggggatgaggtcttctctggatctacatgcaagcagggcgagattgaggccgttgtaatcgcaactggagtccacactttctttggcaaggctgcacacttggtggatagcaccaaccaagttggtcacttccaaaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

226

Amino Acids

24.33

Weight (kDa)

5.02

Isoelectric Point (pI)

27.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011636)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07560 AT3G42640
fragaria_vesca FvH4_1g01450 FvH4_1g01450
malus_domestica MD02G1011600.v1.1
prunus_persica Prupe.7G258000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0086371
rosa_laevigata RLG00000015753
rosa_multiflora Rmu_co8318751.1_g000001 Rmu_sc0003572.1_g000001 Rmu_sc0005127.1_g000010
rosa_roxburghii Rroxscaffold_2G00154660
rosa_rugosa Rorug01G0466900 Rorug01G0467000
rosa_samantha Rh2AG017100 Rh2BG016900 Rh2CG017900 Rh2DG018600
rosa_wichuraiana Rw2G001450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 409
AccB1I GGYRCC 2 cut(s) 409, 534
AccIII TCCGGA 1 cut(s) 235
AciI CCGC 1 cut(s) 329
AclWI GGATC 4 cut(s) 82, 95, 473, 568
AcoI YGGCCR 3 cut(s) 201, 213, 242
AcsI RAATTY 1 cut(s) 402
AdeI CACNNNGTG 1 cut(s) 643
AfaI GTAC 1 cut(s) 411
AfiI CCNNNNNNNGG 3 cut(s) 22, 174, 222
AgeI ACCGGT 2 cut(s) 509, 523
AjnI CCWGG 4 cut(s) 90, 412, 468, 530
AloI GAACNNNNNNTCC 2 cut(s) 14, 46
AluBI AGCT 5 cut(s) 40, 66, 112, 455, 500
AluI AGCT 5 cut(s) 40, 66, 112, 455, 500
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 470
AlwI GGATC 4 cut(s) 82, 95, 473, 568
Ama87I CYCGRG 3 cut(s) 113, 149, 539
Aor13HI TCCGGA 1 cut(s) 235
AoxI GGCC 5 cut(s) 100, 201, 213, 242, 588
ApeKI GCWGC 7 cut(s) 37, 188, 191, 323, 326, 500, 632
ApoI RAATTY 1 cut(s) 402
AsiGI ACCGGT 2 cut(s) 509, 523
Asp718I GGTACC 1 cut(s) 409
AspS9I GGNCC 1 cut(s) 101
AsuC2I CCSGG 3 cut(s) 17, 540, 541
AsuHPI GGTGA 5 cut(s) 190, 398, 499, 520, 524
AvaI CYCGRG 3 cut(s) 113, 149, 539
BaeGI GKGCMC 1 cut(s) 80
BalI TGGCCA 3 cut(s) 203, 215, 244
BamHI GGATCC 1 cut(s) 87
BanI GGYRCC 2 cut(s) 409, 534
BanII GRGCYC 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 544
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 7 cut(s) 49, 175, 178, 310, 313, 487, 619
BccI CCATC 3 cut(s) 175, 331, 368
BceAI ACGGC 1 cut(s) 575
BciT130I CCWGG 4 cut(s) 92, 414, 470, 532
BclI TGATCA 1 cut(s) 273
BcnI CCSGG 3 cut(s) 17, 540, 541
BcoDI GTCTC 1 cut(s) 470
BfaI CTAG 2 cut(s) 342, 347
BisI GCNGC 8 cut(s) 38, 189, 192, 324, 327, 330, 501, 633
BlsI GCNGC 8 cut(s) 39, 190, 193, 325, 328, 331, 502, 634
Bme1390I CCNGG 7 cut(s) 17, 92, 414, 470, 532, 540, 541
BmeT110I CYCGRG 3 cut(s) 113, 149, 539
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 3 cut(s) 89, 411, 536
BmrFI CCNGG 7 cut(s) 17, 92, 414, 470, 532, 540, 541
BmsI GCATC 2 cut(s) 438, 448
BpiI GAAGAC 1 cut(s) 544
BplI GAGNNNNNCTC 2 cut(s) 539, 571
BpmI CTGGAG 2 cut(s) 491, 627
BpuEI CTTGAG 1 cut(s) 125
BpuMI CCSGG 3 cut(s) 17, 540, 541
BsaBI GATNNNNATC 1 cut(s) 428
BsaJI CCNNGG 6 cut(s) 148, 360, 413, 538, 539, 540
BsaWI WCCGGW 3 cut(s) 235, 509, 523
BsaXI ACNNNNNCTCC 4 cut(s) 14, 44, 432, 462
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 174, 222
Bse118I RCCGGY 3 cut(s) 314, 509, 523
Bse1I ACTGG 1 cut(s) 610
Bse8I GATNNNNATC 1 cut(s) 428
BseAI TCCGGA 1 cut(s) 235
BseBI CCWGG 4 cut(s) 92, 414, 470, 532
BseDI CCNNGG 6 cut(s) 148, 360, 413, 538, 539, 540
BseGI GGATG 3 cut(s) 379, 424, 550
BseJI GATNNNNATC 1 cut(s) 428
BseLI CCNNNNNNNGG 3 cut(s) 22, 174, 222
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 610
BseRI GAGGAG 1 cut(s) 86
BseSI GKGCMC 1 cut(s) 80
BseXI GCAGC 7 cut(s) 49, 175, 178, 310, 313, 487, 619
BseYI CCCAGC 1 cut(s) 451
BsgI GTGCAG 1 cut(s) 618
BshFI GGCC 5 cut(s) 102, 203, 215, 244, 590
BshNI GGYRCC 2 cut(s) 409, 534
BshTI ACCGGT 2 cut(s) 509, 523
BsiHKAI GWGCWC 1 cut(s) 68
BsiHKCI CYCGRG 3 cut(s) 113, 149, 539
BsiSI CCGG 6 cut(s) 17, 236, 315, 510, 524, 540
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 3 cut(s) 22, 174, 222
BsmAI GTCTC 1 cut(s) 470
BsmBI CGTCTC 1 cut(s) 470
BsmFI GGGAC 1 cut(s) 434
BsnI GGCC 5 cut(s) 102, 203, 215, 244, 590
BsoBI CYCGRG 3 cut(s) 113, 149, 539
Bsp1286I GDGCHC 2 cut(s) 68, 80
Bsp13I TCCGGA 1 cut(s) 235
Bsp143I GATC 4 cut(s) 87, 273, 478, 560
BspACI CCGC 1 cut(s) 329
BspANI GGCC 5 cut(s) 102, 203, 215, 244, 590
BspCNI CTCAG 1 cut(s) 80
BspEI TCCGGA 1 cut(s) 235
BspLI GGNNCC 3 cut(s) 89, 411, 536
BspPI GGATC 4 cut(s) 82, 95, 473, 568
BspT107I GGYRCC 2 cut(s) 409, 534
BsrFI RCCGGY 3 cut(s) 314, 509, 523
BsrI ACTGG 1 cut(s) 610
BssAI RCCGGY 3 cut(s) 314, 509, 523
BssECI CCNNGG 6 cut(s) 148, 360, 413, 538, 539, 540
BssMI GATC 4 cut(s) 87, 273, 478, 560
BssT1I CCWWGG 1 cut(s) 360
Bst2UI CCWGG 4 cut(s) 92, 414, 470, 532
Bst6I CTCTTC 2 cut(s) 77, 297
BstC8I GCNNGC 2 cut(s) 316, 572
BstDEI CTNAG 1 cut(s) 67
BstEII GGTNACC 1 cut(s) 526
BstF5I GGATG 3 cut(s) 379, 424, 550
BstKTI GATC 4 cut(s) 90, 276, 481, 563
BstMAI GTCTC 1 cut(s) 470
BstMBI GATC 4 cut(s) 87, 273, 478, 560
BstMWI GCNNNNNNNGC 6 cut(s) 200, 320, 329, 338, 347, 576
BstNI CCWGG 4 cut(s) 92, 414, 470, 532
BstNSI RCATGY 1 cut(s) 570
BstPI GGTNACC 1 cut(s) 526
BstSCI CCNGG 7 cut(s) 15, 90, 412, 468, 530, 538, 539
BstSLI GKGCMC 1 cut(s) 80
BstV1I GCAGC 7 cut(s) 49, 175, 178, 310, 313, 487, 619
BstV2I GAAGAC 1 cut(s) 544
BstX2I RGATCY 2 cut(s) 87, 560
BstXI CCANNNNNNTGG 1 cut(s) 211
BstYI RGATCY 2 cut(s) 87, 560
BsuRI GGCC 5 cut(s) 102, 203, 215, 244, 590
BtsCI GGATG 3 cut(s) 379, 424, 550
Cac8I GCNNGC 2 cut(s) 316, 572
Cfr10I RCCGGY 3 cut(s) 314, 509, 523
Cfr13I GGNCC 1 cut(s) 101
Cfr9I CCCGGG 1 cut(s) 539
Csp6I GTAC 1 cut(s) 410
CspAI ACCGGT 2 cut(s) 509, 523
CviAII CATG 4 cut(s) 157, 174, 199, 567
CviQI GTAC 1 cut(s) 410
DdeI CTNAG 1 cut(s) 67
DpnI GATC 4 cut(s) 89, 275, 480, 562
DpnII GATC 4 cut(s) 87, 273, 478, 560
DraIII CACNNNGTG 1 cut(s) 643
EaeI YGGCCR 3 cut(s) 201, 213, 242
Eam1104I CTCTTC 2 cut(s) 77, 297
EarI CTCTTC 2 cut(s) 77, 297
Ecl136II GAGCTC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 360
Eco24I GRGCYC 1 cut(s) 68
Eco53kI GAGCTC 1 cut(s) 66
Eco88I CYCGRG 3 cut(s) 113, 149, 539
Eco91I GGTNACC 1 cut(s) 526
EcoICRI GAGCTC 1 cut(s) 66
EcoO65I GGTNACC 1 cut(s) 526
EcoRII CCWGG 4 cut(s) 90, 412, 468, 530
EcoT14I CCWWGG 1 cut(s) 360
EcoT38I GRGCYC 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 360
Esp3I CGTCTC 1 cut(s) 470
FaeI CATG 4 cut(s) 160, 177, 202, 570
FaiI YATR 6 cut(s) 158, 175, 200, 290, 446, 568
FaqI GGGAC 1 cut(s) 434
FatI CATG 4 cut(s) 156, 173, 198, 566
FbaI TGATCA 1 cut(s) 273
Fnu4HI GCNGC 8 cut(s) 38, 189, 192, 324, 327, 330, 501, 633
FokI GGATG 3 cut(s) 386, 431, 557
FriOI GRGCYC 1 cut(s) 68
Fsp4HI GCNGC 8 cut(s) 38, 189, 192, 324, 327, 330, 501, 633
FspBI CTAG 2 cut(s) 342, 347
GluI GCNGC 8 cut(s) 38, 189, 192, 324, 327, 330, 501, 633
GsaI CCCAGC 1 cut(s) 455
GsuI CTGGAG 2 cut(s) 491, 627
HaeIII GGCC 5 cut(s) 102, 203, 215, 244, 590
HapII CCGG 6 cut(s) 17, 236, 315, 510, 524, 540
Hin1II CATG 4 cut(s) 160, 177, 202, 570
HinfI GANTC 3 cut(s) 163, 515, 609
HpaII CCGG 6 cut(s) 17, 236, 315, 510, 524, 540
HphI GGTGA 5 cut(s) 190, 398, 499, 520, 524
Hpy166II GTNNAC 1 cut(s) 613
Hpy188I TCNGA 3 cut(s) 70, 273, 336
Hpy188III TCNNGA 2 cut(s) 236, 558
Hpy8I GTNNAC 1 cut(s) 613
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 1 cut(s) 46
HpyCH4V TGCA 4 cut(s) 4, 194, 570, 635
HpyF10VI GCNNNNNNNGC 6 cut(s) 200, 320, 329, 338, 347, 576
HpyF3I CTNAG 1 cut(s) 67
Hsp92II CATG 4 cut(s) 160, 177, 202, 570
Kpn2I TCCGGA 1 cut(s) 235
KpnI GGTACC 1 cut(s) 413
KroI GCCGGC 1 cut(s) 314
KroNI GCCGGC 1 cut(s) 316
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 4 cut(s) 87, 273, 478, 560
Lsp1109I GCAGC 7 cut(s) 49, 175, 178, 310, 313, 487, 619
LweI GCATC 2 cut(s) 438, 448
MaeI CTAG 2 cut(s) 342, 347
MaeIII GTNAC 3 cut(s) 366, 526, 665
MalI GATC 4 cut(s) 89, 275, 480, 562
MboI GATC 4 cut(s) 87, 273, 478, 560
MboII GAAGA 3 cut(s) 94, 314, 544
MflI RGATCY 2 cut(s) 87, 560
MhlI GDGCHC 2 cut(s) 68, 80
MlsI TGGCCA 3 cut(s) 203, 215, 244
MluCI AATT 1 cut(s) 402
MluNI TGGCCA 3 cut(s) 203, 215, 244
MlyI GAGTC 1 cut(s) 618
Mox20I TGGCCA 3 cut(s) 203, 215, 244
MroI TCCGGA 1 cut(s) 235
MroNI GCCGGC 1 cut(s) 314
MscI TGGCCA 3 cut(s) 203, 215, 244
MseI TTAA 1 cut(s) 485
Msp20I TGGCCA 3 cut(s) 203, 215, 244
MspA1I CMGCKG 2 cut(s) 40, 455
MspI CCGG 6 cut(s) 17, 236, 315, 510, 524, 540
MspR9I CCNGG 7 cut(s) 17, 92, 414, 470, 532, 540, 541
MvaI CCWGG 4 cut(s) 92, 414, 470, 532
MwoI GCNNNNNNNGC 6 cut(s) 200, 320, 329, 338, 347, 576
NaeI GCCGGC 1 cut(s) 316
NciI CCSGG 3 cut(s) 17, 540, 541
NdeII GATC 4 cut(s) 87, 273, 478, 560
NgoMIV GCCGGC 1 cut(s) 314
NlaIII CATG 4 cut(s) 160, 177, 202, 570
NlaIV GGNNCC 3 cut(s) 89, 411, 536
NmuCI GTSAC 2 cut(s) 526, 665
NspI RCATGY 1 cut(s) 570
PaeR7I CTCGAG 1 cut(s) 113
PdiI GCCGGC 1 cut(s) 316
PfeI GAWTC 2 cut(s) 163, 515
PflFI GACNNNGTC 1 cut(s) 251
PfoI TCCNGGA 1 cut(s) 468
PinAI ACCGGT 2 cut(s) 509, 523
PkrI GCNGC 8 cut(s) 39, 190, 193, 325, 328, 331, 502, 634
PleI GAGTC 1 cut(s) 617
PpsI GAGTC 1 cut(s) 617
Psp124BI GAGCTC 1 cut(s) 68
Psp6I CCWGG 4 cut(s) 90, 412, 468, 530
PspEI GGTNACC 1 cut(s) 526
PspFI CCCAGC 1 cut(s) 451
PspGI CCWGG 4 cut(s) 90, 412, 468, 530
PspN4I GGNNCC 3 cut(s) 89, 411, 536
PspPI GGNCC 1 cut(s) 101
PspXI VCTCGAGB 1 cut(s) 113
PsuI RGATCY 2 cut(s) 87, 560
PsyI GACNNNGTC 1 cut(s) 251
PvuII CAGCTG 2 cut(s) 40, 455
RsaI GTAC 1 cut(s) 411
RsaNI GTAC 1 cut(s) 410
SacI GAGCTC 1 cut(s) 68
SaqAI TTAA 1 cut(s) 485
SatI GCNGC 8 cut(s) 38, 189, 192, 324, 327, 330, 501, 633
Sau3AI GATC 4 cut(s) 87, 273, 478, 560
Sau96I GGNCC 1 cut(s) 101
SchI GAGTC 1 cut(s) 618
ScrFI CCNGG 7 cut(s) 17, 92, 414, 470, 532, 540, 541
SduI GDGCHC 2 cut(s) 68, 80
SetI ASST 9 cut(s) 42, 68, 96, 114, 138, 366, 457, 502, 552
SfaNI GCATC 2 cut(s) 438, 448
Sfr274I CTCGAG 1 cut(s) 113
SgrAI CRCCGGYG 1 cut(s) 509
SlaI CTCGAG 1 cut(s) 113
SmaI CCCGGG 1 cut(s) 541
SmlI CTYRAG 2 cut(s) 113, 140
SmoI CTYRAG 2 cut(s) 113, 140
Sse9I AATT 1 cut(s) 402
SsiI CCGC 1 cut(s) 329
SspMI CTAG 2 cut(s) 342, 347
SstI GAGCTC 1 cut(s) 68
StyD4I CCNGG 7 cut(s) 15, 90, 412, 468, 530, 538, 539
StyI CCWWGG 1 cut(s) 360
TaqI TCGA 4 cut(s) 33, 50, 114, 300
TasI AATT 1 cut(s) 402
TauI GCSGC 1 cut(s) 332
TfiI GAWTC 2 cut(s) 163, 515
Tru1I TTAA 1 cut(s) 485
Tru9I TTAA 1 cut(s) 485
TseFI GTSAC 2 cut(s) 526, 665
TseI GCWGC 7 cut(s) 37, 188, 191, 323, 326, 500, 632
Tsp45I GTSAC 2 cut(s) 526, 665
TspDTI ATGAA 2 cut(s) 145, 286
TspMI CCCGGG 1 cut(s) 539
Tth111I GACNNNGTC 1 cut(s) 251
XapI RAATTY 1 cut(s) 402
XceI RCATGY 1 cut(s) 570
XcmI CCANNNNNNNNNTGG 1 cut(s) 620
XhoI CTCGAG 1 cut(s) 113
XmaI CCCGGG 1 cut(s) 539
XspI CTAG 2 cut(s) 342, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.