Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012977

Physical Location & Seq

Genomic Coordinates Reverse (-)

15091521 .. 15092521

Gene Structure 1001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G43110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCGACTTTGGATTCTCCGTTAGAGGTTTTGGCTTTCGACTACGTTAACTTCGTCTTTAACAATCTTTGGACATGGATCGCCGTCGTGACGGCCGCCGTTAGTTTCTGGCGGATCCGAGCCACTACCACTACCACCACCAGCGGAGGTGGTAGAGACAATGGCTTAATAGATGAATCTTTTCTTGAGCCACCAAAACCACAAGCGACAAAGGCTGCTCTCCTTATGGAGACGAAACCTCCTAGAGTCAAGGTAACGGAGACTGAGGATTGGAGTTTGTTGTTGTGTAAGGACGGAGTAACGAAGGGGAAGCTAACCGTGTACTACGAAGAAGAGATTGACGGAGAGAGAGAAGAAGATGACGGAGAGACAACGGCCGTTAAGTATGGAGGAGGTGAGAGTGGAGAATGGTGGGAGAGATGGGAGAGAGTGGTGAAGATGAGAAATGGAGATGAAGGTTGGTACCGTTACGTGGATTTAACGGTGATTAACGGAAATGTTGTGAGGTTGTGGGATGCTAACCGTGTACGTAACGGTGGTTGGGTTAGTGTGCAACGTAAGGAGTGTTATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

21.74

Weight (kDa)

4.78

Isoelectric Point (pI)

29.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43110 AT5G20790 AT5G20790
fragaria_vesca	FvH4_1g09230
malus_domestica	MD02G1099300.v1.1 MD15G1222300.v1.1
prunus_persica	Prupe.7G193600_v2.0.a1
pyrus_communis	pycom02g07740
rosa_chinensis	RchiOBHm_Chr2g0095761
rosa_laevigata	RLG00000016590
rosa_multiflora	Rmu_sc0005941.1_g000003
rosa_roxburghii	Rroxscaffold_2G00146120
rosa_rugosa	Rorug02G0053000
rosa_samantha	Rh2AG101400 Rh2BG103100 Rh2CG105400 Rh2DG102800
rosa_wichuraiana	Rw2G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	462
AccB1I	GGYRCC	1 cut(s)	462
AciI	CCGC	3 cut(s)	96, 112, 144
AclWI	GGATC	3 cut(s)	86, 109, 122
AcoI	YGGCCR	2 cut(s)	93, 375
AfaI	GTAC	3 cut(s)	323, 464, 528
AfiI	CCNNNNNNNGG	1 cut(s)	472
AluBI	AGCT	1 cut(s)	313
AluI	AGCT	1 cut(s)	313
Alw26I	GTCTC	4 cut(s)	150, 224, 254, 362
AlwI	GGATC	3 cut(s)	86, 109, 122
AoxI	GGCC	2 cut(s)	93, 375
ApeKI	GCWGC	1 cut(s)	215
Asp700I	GAANNNNTTC	1 cut(s)	180
Asp718I	GGTACC	1 cut(s)	462
AsuHPI	GGTGA	3 cut(s)	407, 445, 496
BamHI	GGATCC	1 cut(s)	114
BanI	GGYRCC	1 cut(s)	462
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	1 cut(s)	414
BceAI	ACGGC	5 cut(s)	68, 83, 108, 362, 390
BcoDI	GTCTC	4 cut(s)	150, 224, 254, 362
BfaI	CTAG	1 cut(s)	243
BisI	GCNGC	2 cut(s)	96, 216
BlsI	GCNGC	2 cut(s)	97, 217
BmiI	GGNNCC	2 cut(s)	116, 464
BmsI	GCATC	1 cut(s)	505
BpuEI	CTTGAG	1 cut(s)	206
BsaAI	YACGTR	2 cut(s)	472, 530
BsaXI	ACNNNNNCTCC	2 cut(s)	223, 253
Bsc4I	CCNNNNNNNGG	1 cut(s)	472
BseGI	GGATG	1 cut(s)	520
BseLI	CCNNNNNNNGG	1 cut(s)	472
BseMII	CTCAG	1 cut(s)	255
BseRI	GAGGAG	1 cut(s)	405
BseX3I	CGGCCG	2 cut(s)	93, 375
BseXI	GCAGC	1 cut(s)	202
Bsh1285I	CGRYCG	2 cut(s)	96, 378
BshFI	GGCC	2 cut(s)	95, 377
BshNI	GGYRCC	1 cut(s)	462
BsiEI	CGRYCG	2 cut(s)	96, 378
BslI	CCNNNNNNNGG	1 cut(s)	472
BsmAI	GTCTC	4 cut(s)	150, 224, 254, 362
BsmBI	CGTCTC	1 cut(s)	224
BsnI	GGCC	2 cut(s)	95, 377
Bsp143I	GATC	2 cut(s)	78, 114
BspACI	CCGC	3 cut(s)	96, 112, 144
BspANI	GGCC	2 cut(s)	95, 377
BspCNI	CTCAG	1 cut(s)	256
BspLI	GGNNCC	2 cut(s)	116, 464
BspPI	GGATC	3 cut(s)	86, 109, 122
BspT107I	GGYRCC	1 cut(s)	462
BssMI	GATC	2 cut(s)	78, 114
Bst4CI	ACNGT	5 cut(s)	319, 467, 484, 524, 536
Bst6I	CTCTTC	1 cut(s)	327
BstBAI	YACGTR	2 cut(s)	472, 530
BstDEI	CTNAG	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	520
BstKTI	GATC	2 cut(s)	81, 117
BstMAI	GTCTC	4 cut(s)	150, 224, 254, 362
BstMBI	GATC	2 cut(s)	78, 114
BstMCI	CGRYCG	2 cut(s)	96, 378
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstSNI	TACGTA	1 cut(s)	530
BstV1I	GCAGC	1 cut(s)	202
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BstZI	CGGCCG	2 cut(s)	93, 375
BsuRI	GGCC	2 cut(s)	95, 377
BtsCI	GGATG	1 cut(s)	520
Csp6I	GTAC	3 cut(s)	322, 463, 527
CviAII	CATG	1 cut(s)	75
CviJI	RGCY	8 cut(s)	35, 95, 122, 165, 190, 215, 313, 377
CviKI_1	RGCY	8 cut(s)	35, 95, 122, 165, 190, 215, 313, 377
CviQI	GTAC	3 cut(s)	322, 463, 527
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	2 cut(s)	80, 116
DpnII	GATC	2 cut(s)	78, 114
EaeI	YGGCCR	2 cut(s)	93, 375
EagI	CGGCCG	2 cut(s)	93, 375
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
EciI	GGCGGA	1 cut(s)	127
EclXI	CGGCCG	2 cut(s)	93, 375
Eco105I	TACGTA	1 cut(s)	530
Eco52I	CGGCCG	2 cut(s)	93, 375
Esp3I	CGTCTC	1 cut(s)	224
FaeI	CATG	1 cut(s)	78
FaiI	YATR	4 cut(s)	76, 227, 387, 570
FatI	CATG	1 cut(s)	74
Fnu4HI	GCNGC	2 cut(s)	96, 216
FokI	GGATG	1 cut(s)	527
Fsp4HI	GCNGC	2 cut(s)	96, 216
FspBI	CTAG	1 cut(s)	243
GluI	GCNGC	2 cut(s)	96, 216
HaeIII	GGCC	2 cut(s)	95, 377
Hin1II	CATG	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	3 cut(s)	14, 176, 246
HpaI	GTTAAC	1 cut(s)	49
HphI	GGTGA	3 cut(s)	407, 445, 496
Hpy166II	GTNNAC	3 cut(s)	49, 322, 527
Hpy188I	TCNGA	1 cut(s)	119
Hpy188III	TCNNGA	2 cut(s)	88, 185
Hpy8I	GTNNAC	3 cut(s)	49, 322, 527
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	298, 449
HpyCH4III	ACNGT	5 cut(s)	319, 467, 484, 524, 536
HpyCH4IV	ACGT	4 cut(s)	45, 471, 529, 556
HpyCH4V	TGCA	1 cut(s)	553
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	4 cut(s)	45, 471, 529, 556
Hsp92II	CATG	1 cut(s)	78
KpnI	GGTACC	1 cut(s)	466
KspAI	GTTAAC	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	78, 114
LpnPI	CCDG	2 cut(s)	94, 154
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	1 cut(s)	505
MaeI	CTAG	1 cut(s)	243
MaeII	ACGT	4 cut(s)	45, 471, 529, 556
MaeIII	GTNAC	5 cut(s)	88, 253, 298, 467, 530
MalI	GATC	2 cut(s)	80, 116
MboI	GATC	2 cut(s)	78, 114
MboII	GAAGA	5 cut(s)	341, 344, 365, 368, 448
MflI	RGATCY	1 cut(s)	114
MlyI	GAGTC	1 cut(s)	255
MnlI	CCTC	7 cut(s)	19, 140, 249, 259, 383, 386, 498
MroXI	GAANNNNTTC	1 cut(s)	180
MseI	TTAA	6 cut(s)	48, 60, 167, 381, 479, 489
MspA1I	CMGCKG	1 cut(s)	144
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeII	GATC	2 cut(s)	78, 114
NlaIII	CATG	1 cut(s)	78
NlaIV	GGNNCC	2 cut(s)	116, 464
NmuCI	GTSAC	1 cut(s)	88
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PdmI	GAANNNNTTC	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	14, 176
PkrI	GCNGC	2 cut(s)	97, 217
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
Ppu21I	YACGTR	2 cut(s)	472, 530
PspN4I	GGNNCC	2 cut(s)	116, 464
PsuI	RGATCY	1 cut(s)	114
RsaI	GTAC	3 cut(s)	323, 464, 528
RsaNI	GTAC	3 cut(s)	322, 463, 527
SaqAI	TTAA	6 cut(s)	48, 60, 167, 381, 479, 489
SatI	GCNGC	2 cut(s)	96, 216
Sau3AI	GATC	2 cut(s)	78, 114
SchI	GAGTC	1 cut(s)	255
SfaNI	GCATC	1 cut(s)	505
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SnaBI	TACGTA	1 cut(s)	530
SsiI	CCGC	3 cut(s)	96, 112, 144
SspMI	CTAG	1 cut(s)	243
TaaI	ACNGT	5 cut(s)	319, 467, 484, 524, 536
TaiI	ACGT	4 cut(s)	48, 474, 532, 559
TaqI	TCGA	1 cut(s)	39
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	2 cut(s)	14, 176
Tru1I	TTAA	6 cut(s)	48, 60, 167, 381, 479, 489
Tru9I	TTAA	6 cut(s)	48, 60, 167, 381, 479, 489
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	2 cut(s)	189, 468
TspGWI	ACGGA	6 cut(s)	9, 272, 309, 357, 378, 507
XmnI	GAANNNNTTC	1 cut(s)	180
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.