FvH4_1g09230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012977
Physical Location & Seq
Reverse (-)
4929605 .. 4930582
978 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g09230.t1

Sequence Viewer

Length: 588 bp
ATGAACAGTGTGTTGGATTCTCCTCTCGCTTTCGACTACGTTAGCTTCGGTTTGATAAACGTTGTCAATAGTCTCTGGACTTGGCTCGCCGTCGTCACCGCCACCGTCAGCTTCTGGAGGCTCAGACCTAGAGCCATCGAGGGCTTGAAGCTCCACTTACCGTCCTCAAACGACGTCGTCAGGAGCTCAAATGGGTGTTCTCCATTTCCTGAAACGTCACCGCCGCCAGTCACGGCGGAGGAGGAGTTGCCAAGATCGGTTTCAGCGCCTCCATCTCGAGCGCATGCAGCTGTGCCTTCTTCATCATCAGGCCTGGGTAGATTTGAAGATGACGGAGGTGTGACGAAAGGCGTCAAGTTTACATTGTATTTTGATGAGGATACAAACGGAGACGTTGGCGGTGAAGGTGAAGGTGATGGTGACGTAACGGCGCGGGAGACGGAAGAGAGCGGCGGTGAGAATTGGTGGGAGAGTTGTTTGAGGATGAGGACGGAGGAGAAGAGCTGGTATAGGTACCAGGATTTGACGGTGTTTAACGGCAACGTCGTTAGGTTATGGGATGATAATCAAGGTTGCAGAGTTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

21.47

Weight (kDa)

4.56

Isoelectric Point (pI)

55.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012977)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43110 AT5G20790 AT5G20790
fragaria_vesca FvH4_1g09230
malus_domestica MD02G1099300.v1.1 MD15G1222300.v1.1
prunus_persica Prupe.7G193600_v2.0.a1
pyrus_communis pycom02g07740
rosa_chinensis RchiOBHm_Chr2g0095761
rosa_laevigata RLG00000016590
rosa_multiflora Rmu_sc0005941.1_g000003
rosa_roxburghii Rroxscaffold_2G00146120
rosa_rugosa Rorug02G0053000
rosa_samantha Rh2AG101400 Rh2BG103100 Rh2CG105400 Rh2DG102800
rosa_wichuraiana Rw2G007690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 177
Acc65I GGTACC 1 cut(s) 513
AccB1I GGYRCC 1 cut(s) 513
AccBSI CCGCTC 1 cut(s) 450
AccII CGCG 1 cut(s) 433
AciI CCGC 8 cut(s) 99, 221, 224, 236, 399, 433, 450, 453
AclI AACGTT 1 cut(s) 60
AcyI GRCGYC 2 cut(s) 174, 351
AfaI GTAC 1 cut(s) 515
AgsI TTSAA 2 cut(s) 148, 326
AjnI CCWGG 2 cut(s) 312, 516
AjuI GAANNNNNNNTTGG 3 cut(s) 28, 244, 276
AluBI AGCT 6 cut(s) 45, 111, 151, 186, 290, 504
AluI AGCT 6 cut(s) 45, 111, 151, 186, 290, 504
Alw21I GWGCWC 1 cut(s) 188
Alw26I GTCTC 3 cut(s) 77, 384, 431
AlwNI CAGNNNCTG 1 cut(s) 114
Ama87I CYCGRG 1 cut(s) 276
AoxI GGCC 1 cut(s) 310
ApeKI GCWGC 1 cut(s) 287
Asp718I GGTACC 1 cut(s) 513
AspLEI GCGC 3 cut(s) 268, 283, 433
AsuHPI GGTGA 7 cut(s) 88, 210, 413, 419, 425, 431, 467
AvaI CYCGRG 1 cut(s) 276
BanI GGYRCC 1 cut(s) 513
BanII GRGCYC 1 cut(s) 188
Bbv12I GWGCWC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 299
BccI CCATC 3 cut(s) 143, 280, 410
BceAI ACGGC 4 cut(s) 74, 249, 444, 553
BciT130I CCWGG 2 cut(s) 314, 518
BciVI GTATCC 1 cut(s) 373
BcoDI GTCTC 3 cut(s) 77, 384, 431
BfaI CTAG 1 cut(s) 129
BfoI RGCGCY 1 cut(s) 269
BfuI GTATCC 1 cut(s) 373
BisI GCNGC 3 cut(s) 224, 288, 451
BlsI GCNGC 3 cut(s) 225, 289, 452
Bme1390I CCNGG 2 cut(s) 314, 518
BmeT110I CYCGRG 1 cut(s) 276
BmiI GGNNCC 1 cut(s) 515
BmrFI CCNGG 2 cut(s) 314, 518
BpmI CTGGAG 1 cut(s) 136
BsaBI GATNNNNATC 1 cut(s) 564
BsaHI GRCGYC 2 cut(s) 174, 351
BsaJI CCNNGG 1 cut(s) 313
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bse1I ACTGG 1 cut(s) 227
Bse8I GATNNNNATC 1 cut(s) 564
BseBI CCWGG 2 cut(s) 314, 518
BseDI CCNNGG 1 cut(s) 313
BseGI GGATG 2 cut(s) 489, 565
BseJI GATNNNNATC 1 cut(s) 564
BseMII CTCAG 1 cut(s) 136
BseNI ACTGG 1 cut(s) 227
BseRI GAGGAG 4 cut(s) 12, 254, 257, 509
BseXI GCAGC 1 cut(s) 299
Bsh1236I CGCG 1 cut(s) 433
BshFI GGCC 1 cut(s) 312
BshNI GGYRCC 1 cut(s) 513
BsiHKAI GWGCWC 1 cut(s) 188
BsiHKCI CYCGRG 1 cut(s) 276
BsmAI GTCTC 3 cut(s) 77, 384, 431
BsmBI CGTCTC 2 cut(s) 384, 431
BsnI GGCC 1 cut(s) 312
BsoBI CYCGRG 1 cut(s) 276
Bsp1286I GDGCHC 1 cut(s) 188
Bsp143I GATC 1 cut(s) 254
BspACI CCGC 8 cut(s) 99, 221, 224, 236, 399, 433, 450, 453
BspANI GGCC 1 cut(s) 312
BspCNI CTCAG 1 cut(s) 135
BspFNI CGCG 1 cut(s) 433
BspLI GGNNCC 1 cut(s) 515
BspQI GCTCTTC 1 cut(s) 494
BspT107I GGYRCC 1 cut(s) 513
BsrBI CCGCTC 1 cut(s) 450
BsrI ACTGG 1 cut(s) 227
BssECI CCNNGG 1 cut(s) 313
BssMI GATC 1 cut(s) 254
BssNI GRCGYC 2 cut(s) 174, 351
Bst2UI CCWGG 2 cut(s) 314, 518
Bst4CI ACNGT 4 cut(s) 8, 106, 162, 529
Bst6I CTCTTC 2 cut(s) 438, 494
BstACI GRCGYC 2 cut(s) 174, 351
BstC8I GCNNGC 2 cut(s) 87, 285
BstDEI CTNAG 1 cut(s) 122
BstF5I GGATG 2 cut(s) 489, 565
BstFNI CGCG 1 cut(s) 433
BstH2I RGCGCY 1 cut(s) 269
BstHHI GCGC 3 cut(s) 268, 283, 433
BstKTI GATC 1 cut(s) 257
BstMAI GTCTC 3 cut(s) 77, 384, 431
BstMBI GATC 1 cut(s) 254
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstNI CCWGG 2 cut(s) 314, 518
BstNSI RCATGY 1 cut(s) 287
BstSCI CCNGG 2 cut(s) 312, 516
BstUI CGCG 1 cut(s) 433
BstV1I GCAGC 1 cut(s) 299
BsuI GTATCC 1 cut(s) 373
BsuRI GGCC 1 cut(s) 312
BtsCI GGATG 2 cut(s) 489, 565
BtsIMutI CAGTG 1 cut(s) 13
Cac8I GCNNGC 2 cut(s) 87, 285
CaiI CAGNNNCTG 1 cut(s) 114
CfoI GCGC 3 cut(s) 268, 283, 433
CseI GACGC 1 cut(s) 340
Csp6I GTAC 1 cut(s) 514
CviAII CATG 1 cut(s) 284
CviQI GTAC 1 cut(s) 514
DdeI CTNAG 1 cut(s) 122
DpnI GATC 1 cut(s) 256
DpnII GATC 1 cut(s) 254
Eam1104I CTCTTC 2 cut(s) 438, 494
EarI CTCTTC 2 cut(s) 438, 494
EciI GGCGGA 1 cut(s) 251
Ecl136II GAGCTC 1 cut(s) 186
Eco147I AGGCCT 1 cut(s) 312
Eco24I GRGCYC 1 cut(s) 188
Eco53kI GAGCTC 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 276
EcoICRI GAGCTC 1 cut(s) 186
EcoRII CCWGG 2 cut(s) 312, 516
EcoT38I GRGCYC 1 cut(s) 188
Esp3I CGTCTC 2 cut(s) 384, 431
FaeI CATG 1 cut(s) 287
FaiI YATR 3 cut(s) 285, 510, 556
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FatI CATG 1 cut(s) 283
FauI CCCGC 1 cut(s) 426
Fnu4HI GCNGC 3 cut(s) 224, 288, 451
FokI GGATG 2 cut(s) 496, 572
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 3 cut(s) 224, 288, 451
FspBI CTAG 1 cut(s) 129
GlaI GCGC 3 cut(s) 267, 282, 432
GluI GCNGC 3 cut(s) 224, 288, 451
GsuI CTGGAG 1 cut(s) 136
HaeII RGCGCY 1 cut(s) 269
HaeIII GGCC 1 cut(s) 312
HgaI GACGC 1 cut(s) 340
HhaI GCGC 3 cut(s) 268, 283, 433
Hin1I GRCGYC 2 cut(s) 174, 351
Hin1II CATG 1 cut(s) 287
Hin6I GCGC 3 cut(s) 266, 281, 431
HinP1I GCGC 3 cut(s) 266, 281, 431
HinfI GANTC 1 cut(s) 17
HphI GGTGA 7 cut(s) 88, 210, 413, 419, 425, 431, 467
Hpy166II GTNNAC 1 cut(s) 360
Hpy188I TCNGA 1 cut(s) 125
Hpy188III TCNNGA 5 cut(s) 76, 115, 181, 209, 276
Hpy8I GTNNAC 1 cut(s) 360
Hpy99I CGWCG 4 cut(s) 95, 176, 179, 548
HpyAV CCTTC 3 cut(s) 306, 398, 404
HpyCH4III ACNGT 4 cut(s) 8, 106, 162, 529
HpyCH4IV ACGT 7 cut(s) 39, 60, 174, 215, 393, 423, 543
HpyCH4V TGCA 2 cut(s) 287, 576
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 1 cut(s) 122
HpySE526I ACGT 7 cut(s) 39, 60, 174, 215, 393, 423, 543
Hsp92I GRCGYC 2 cut(s) 174, 351
Hsp92II CATG 1 cut(s) 287
HspAI GCGC 3 cut(s) 266, 281, 431
KpnI GGTACC 1 cut(s) 517
Kzo9I GATC 1 cut(s) 254
LguI GCTCTTC 1 cut(s) 494
LmnI GCTCC 2 cut(s) 156, 183
Lsp1109I GCAGC 1 cut(s) 299
MaeI CTAG 1 cut(s) 129
MaeII ACGT 7 cut(s) 39, 60, 174, 215, 393, 423, 543
MaeIII GTNAC 6 cut(s) 94, 216, 229, 340, 419, 424
MalI GATC 1 cut(s) 256
MbiI CCGCTC 1 cut(s) 450
MboI GATC 1 cut(s) 254
MboII GAAGA 4 cut(s) 291, 338, 455, 511
MhlI GDGCHC 1 cut(s) 188
MluCI AATT 2 cut(s) 460, 583
MseI TTAA 2 cut(s) 534, 582
MspA1I CMGCKG 1 cut(s) 290
MspR9I CCNGG 2 cut(s) 314, 518
MvaI CCWGG 2 cut(s) 314, 518
MvnI CGCG 1 cut(s) 433
MwoI GCNNNNNNNGC 1 cut(s) 287
NdeII GATC 1 cut(s) 254
NlaIII CATG 1 cut(s) 287
NlaIV GGNNCC 1 cut(s) 515
NmuCI GTSAC 5 cut(s) 94, 216, 229, 340, 419
NspI RCATGY 1 cut(s) 287
PaeI GCATGC 1 cut(s) 287
PaeR7I CTCGAG 1 cut(s) 276
PceI AGGCCT 1 cut(s) 312
PciSI GCTCTTC 1 cut(s) 494
PcsI WCGNNNNNNNCGW 1 cut(s) 543
PfeI GAWTC 1 cut(s) 17
PflFI GACNNNGTC 1 cut(s) 176
PkrI GCNGC 3 cut(s) 225, 289, 452
Psp124BI GAGCTC 1 cut(s) 188
Psp1406I AACGTT 1 cut(s) 60
Psp6I CCWGG 2 cut(s) 312, 516
PspGI CCWGG 2 cut(s) 312, 516
PspN4I GGNNCC 1 cut(s) 515
PstNI CAGNNNCTG 1 cut(s) 114
PsyI GACNNNGTC 1 cut(s) 176
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 1 cut(s) 515
RsaNI GTAC 1 cut(s) 514
SacI GAGCTC 1 cut(s) 188
SapI GCTCTTC 1 cut(s) 494
SaqAI TTAA 2 cut(s) 534, 582
SatI GCNGC 3 cut(s) 224, 288, 451
Sau3AI GATC 1 cut(s) 254
ScrFI CCNGG 2 cut(s) 314, 518
SduI GDGCHC 1 cut(s) 188
Sfr274I CTCGAG 1 cut(s) 276
SlaI CTCGAG 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 276
SmoI CTYRAG 1 cut(s) 276
SphI GCATGC 1 cut(s) 287
Sse9I AATT 2 cut(s) 460, 583
SseBI AGGCCT 1 cut(s) 312
SsiI CCGC 8 cut(s) 99, 221, 224, 236, 399, 433, 450, 453
SspMI CTAG 1 cut(s) 129
SstI GAGCTC 1 cut(s) 188
StuI AGGCCT 1 cut(s) 312
StyD4I CCNGG 2 cut(s) 312, 516
TaaI ACNGT 4 cut(s) 8, 106, 162, 529
TaiI ACGT 7 cut(s) 42, 63, 177, 218, 396, 426, 546
TaqI TCGA 3 cut(s) 33, 138, 277
TasI AATT 2 cut(s) 460, 583
TauI GCSGC 2 cut(s) 226, 453
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 2 cut(s) 534, 582
Tru9I TTAA 2 cut(s) 534, 582
TscAI CASTG 1 cut(s) 13
TseFI GTSAC 5 cut(s) 94, 216, 229, 340, 419
TseI GCWGC 1 cut(s) 287
Tsp45I GTSAC 5 cut(s) 94, 216, 229, 340, 419
TspDTI ATGAA 2 cut(s) 17, 291
TspGWI ACGGA 4 cut(s) 348, 402, 455, 506
TspRI CASTG 1 cut(s) 13
Tth111I GACNNNGTC 1 cut(s) 176
XceI RCATGY 1 cut(s) 287
XhoI CTCGAG 1 cut(s) 276
XspI CTAG 1 cut(s) 129
ZraI GACGTC 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.