Rmu_sc0005941.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005941.1
OG0012977
Physical Location & Seq
Forward (+)
11965 .. 14044
2080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005941.1_g000003.1.cds

Sequence Viewer

Length: 1173 bp
atgaaattcgtgttggattctcctctcgaagctctcgctttcgactacgttagcttcgggttgatcaccgttatcaatagtctctggacttgggtcgccgtcgtcaccgccgccgttagcttctggaggctcagacctagagcccttgaaggcttgaagttccactccaacgacgtcgtcaagagctcaaatgggagttcttcatttcctgaaacatcgccaccggtcacggtggaggaggagtcgccaagctcggtttcagctccacctcgagcaccagtagccgtttcatcatcaggtagatttgaagatgacggaggtttgacgaaaggcgtcaaatttacattgtattttgatcaggatacaaacggagacgttggcggtgaaggtgagttgacggcggaggagacggaagagagtggcggtgtgaactggtgggagagtggtttgaggatgaggacgggggagaagagttggtacaggtgccaggatttgacggtgtttaacggcaacgtcgttaggttatgggataataatcacggttgcagaatcaactcaccgcagcgctgcgtcgtttggttgttggtggaggaggaacgcgccccacgcgcgaggaaaaaaggaagaatcccaaagttgctcgtttctctcccggccgagcgcaattggctatcccgccgctgcgttccggccccggaaaggatgccggtgatgtttggtagaaggccctcagtgcagagatgcggtccagatgaggagggtgggctcttgatttcgggttgggcagatcgttttcgatctgtccttctgcgttcaggggcaacgacggccgaggtattgcagcggtttgtttctgtctggcggtgggacacggcgcatcgcataggctggctgaatcgtggtggaggcagtcaaatcgcggcagaagggctccccgtagggagctgtttctatcgtgcgtttggatctgggtgcggttgccaacaggatgtagatcctgtttgcaacttggcaaggtggagtggcggtgtcaagcaacggcgaggcagtggggtgatgacgatggtggttgccggcggtgggaatggttgtctgcaatgcttggttgttgttgggggaagtggggtttgggacgggcccctgtctttgggctttggtgttgtttggttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

390

Amino Acids

42.62

Weight (kDa)

8.29

Isoelectric Point (pI)

52.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012977)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43110 AT5G20790 AT5G20790
fragaria_vesca FvH4_1g09230
malus_domestica MD02G1099300.v1.1 MD15G1222300.v1.1
prunus_persica Prupe.7G193600_v2.0.a1
pyrus_communis pycom02g07740
rosa_chinensis RchiOBHm_Chr2g0095761
rosa_laevigata RLG00000016590
rosa_multiflora Rmu_sc0005941.1_g000003
rosa_roxburghii Rroxscaffold_2G00146120
rosa_rugosa Rorug02G0053000
rosa_samantha Rh2AG101400 Rh2BG103100 Rh2CG105400 Rh2DG102800
rosa_wichuraiana Rw2G007690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 177
AccB1I GGYRCC 1 cut(s) 483
AccII CGCG 4 cut(s) 600, 609, 611, 920
AclWI GGATC 2 cut(s) 973, 989
AcoI YGGCCR 2 cut(s) 654, 828
AcsI RAATTY 2 cut(s) 5, 338
AcyI GRCGYC 2 cut(s) 174, 333
AfaI GTAC 1 cut(s) 479
AfeI AGCGCT 1 cut(s) 566
AfiI CCNNNNNNNGG 3 cut(s) 699, 1080, 1147
AgeI ACCGGT 1 cut(s) 223
AgsI TTSAA 3 cut(s) 149, 157, 308
AjnI CCWGG 1 cut(s) 486
AjuI GAANNNNNNNTTGG 5 cut(s) 28, 241, 273, 1111, 1143
AluBI AGCT 7 cut(s) 32, 54, 120, 186, 252, 263, 945
AluI AGCT 7 cut(s) 32, 54, 120, 186, 252, 263, 945
Alw21I GWGCWC 2 cut(s) 188, 277
Alw26I GTCTC 3 cut(s) 86, 366, 401
AlwI GGATC 2 cut(s) 973, 989
Ama87I CYCGRG 1 cut(s) 270
Aor51HI AGCGCT 1 cut(s) 566
AoxI GGCC 5 cut(s) 654, 690, 725, 828, 1136
ApaI GGGCCC 1 cut(s) 1140
ApeKI GCWGC 4 cut(s) 562, 567, 681, 841
ApoI RAATTY 2 cut(s) 5, 338
AsiGI ACCGGT 1 cut(s) 223
AspLEI GCGC 5 cut(s) 567, 602, 611, 663, 877
AspS9I GGNCC 5 cut(s) 691, 726, 746, 1136, 1137
AsuC2I CCSGG 2 cut(s) 653, 695
AsuHPI GGTGA 7 cut(s) 58, 97, 395, 401, 549, 721, 1066
AvaI CYCGRG 1 cut(s) 270
AvaII GGWCC 1 cut(s) 746
BaeGI GKGCMC 1 cut(s) 1140
BanI GGYRCC 1 cut(s) 483
BanII GRGCYC 5 cut(s) 145, 188, 768, 933, 1140
BarI GAAGNNNNNNTAC 2 cut(s) 461, 493
Bbv12I GWGCWC 2 cut(s) 188, 277
BbvI GCAGC 4 cut(s) 554, 574, 668, 853
BccI CCATC 1 cut(s) 1057
BceAI ACGGC 8 cut(s) 83, 98, 269, 414, 523, 843, 888, 1055
BcgI CGANNNNNNTGC 2 cut(s) 898, 932
BciT130I CCWGG 1 cut(s) 488
BciVI GTATCC 1 cut(s) 355
BclI TGATCA 2 cut(s) 63, 355
BcnI CCSGG 2 cut(s) 653, 695
BcoDI GTCTC 3 cut(s) 86, 366, 401
BfaI CTAG 1 cut(s) 138
BfoI RGCGCY 1 cut(s) 568
BfuI GTATCC 1 cut(s) 355
BisI GCNGC 7 cut(s) 111, 563, 568, 679, 682, 842, 921
BlsI GCNGC 7 cut(s) 112, 564, 569, 680, 683, 843, 922
Bme1390I CCNGG 3 cut(s) 488, 653, 695
Bme18I GGWCC 1 cut(s) 746
BmeT110I CYCGRG 1 cut(s) 270
BmgT120I GGNCC 5 cut(s) 691, 726, 746, 1136, 1137
BmiI GGNNCC 5 cut(s) 485, 693, 932, 1138, 1139
BmrFI CCNGG 3 cut(s) 488, 653, 695
BmsI GCATC 3 cut(s) 693, 731, 886
BoxI GACNNNNGTC 1 cut(s) 92
BpmI CTGGAG 1 cut(s) 145
BpuMI CCSGG 2 cut(s) 653, 695
BsaBI GATNNNNATC 2 cut(s) 534, 993
BsaHI GRCGYC 2 cut(s) 174, 333
BsaJI CCNNGG 2 cut(s) 693, 831
BsaWI WCCGGW 1 cut(s) 223
BsaXI ACNNNNNCTCC 4 cut(s) 227, 257, 1012, 1042
Bsc4I CCNNNNNNNGG 3 cut(s) 699, 1080, 1147
Bse118I RCCGGY 3 cut(s) 223, 706, 1073
Bse1I ACTGG 2 cut(s) 278, 437
Bse3DI GCAATG 1 cut(s) 1103
Bse8I GATNNNNATC 2 cut(s) 534, 993
BseBI CCWGG 1 cut(s) 488
BseDI CCNNGG 2 cut(s) 693, 831
BseGI GGATG 3 cut(s) 459, 708, 994
BseJI GATNNNNATC 2 cut(s) 534, 993
BseLI CCNNNNNNNGG 3 cut(s) 699, 1080, 1147
BseMI GCAATG 1 cut(s) 1103
BseMII CTCAG 2 cut(s) 145, 744
BseNI ACTGG 2 cut(s) 278, 437
BseRI GAGGAG 6 cut(s) 12, 251, 254, 419, 605, 770
BseSI GKGCMC 1 cut(s) 1140
BseX3I CGGCCG 2 cut(s) 654, 828
BseXI GCAGC 4 cut(s) 554, 574, 668, 853
BsgI GTGCAG 1 cut(s) 755
Bsh1236I CGCG 4 cut(s) 600, 609, 611, 920
Bsh1285I CGRYCG 2 cut(s) 657, 831
BshFI GGCC 5 cut(s) 656, 692, 727, 830, 1138
BshNI GGYRCC 1 cut(s) 483
BshTI ACCGGT 1 cut(s) 223
BsiEI CGRYCG 2 cut(s) 657, 831
BsiHKAI GWGCWC 2 cut(s) 188, 277
BsiHKCI CYCGRG 1 cut(s) 270
BsiSI CCGG 6 cut(s) 224, 653, 689, 695, 707, 1074
BslFI GGGAC 2 cut(s) 881, 1145
BslI CCNNNNNNNGG 3 cut(s) 699, 1080, 1147
BsmAI GTCTC 3 cut(s) 86, 366, 401
BsmBI CGTCTC 2 cut(s) 366, 401
BsmFI GGGAC 2 cut(s) 881, 1145
BsnI GGCC 5 cut(s) 656, 692, 727, 830, 1138
BsoBI CYCGRG 1 cut(s) 270
Bsp120I GGGCCC 1 cut(s) 1136
Bsp1286I GDGCHC 6 cut(s) 145, 188, 277, 768, 933, 1140
Bsp143I GATC 6 cut(s) 63, 355, 787, 797, 965, 994
BspANI GGCC 5 cut(s) 656, 692, 727, 830, 1138
BspCNI CTCAG 2 cut(s) 144, 743
BspFNI CGCG 4 cut(s) 600, 609, 611, 920
BspLI GGNNCC 5 cut(s) 485, 693, 932, 1138, 1139
BspPI GGATC 2 cut(s) 973, 989
BspT107I GGYRCC 1 cut(s) 483
BsrDI GCAATG 1 cut(s) 1103
BsrFI RCCGGY 3 cut(s) 223, 706, 1073
BsrI ACTGG 2 cut(s) 278, 437
BssAI RCCGGY 3 cut(s) 223, 706, 1073
BssECI CCNNGG 2 cut(s) 693, 831
BssMI GATC 6 cut(s) 63, 355, 787, 797, 965, 994
BssNI GRCGYC 2 cut(s) 174, 333
Bst2UI CCWGG 1 cut(s) 488
Bst4CI ACNGT 4 cut(s) 70, 232, 499, 542
Bst6I CTCTTC 2 cut(s) 408, 464
BstACI GRCGYC 2 cut(s) 174, 333
BstC8I GCNNGC 2 cut(s) 890, 1075
BstDEI CTNAG 2 cut(s) 131, 730
BstF5I GGATG 3 cut(s) 459, 708, 994
BstFNI CGCG 4 cut(s) 600, 609, 611, 920
BstH2I RGCGCY 1 cut(s) 568
BstHHI GCGC 5 cut(s) 567, 602, 611, 663, 877
BstKTI GATC 6 cut(s) 66, 358, 790, 800, 968, 997
BstMAI GTCTC 3 cut(s) 86, 366, 401
BstMBI GATC 6 cut(s) 63, 355, 787, 797, 965, 994
BstMCI CGRYCG 2 cut(s) 657, 831
BstMWI GCNNNNNNNGC 6 cut(s) 281, 606, 608, 667, 733, 827
BstNI CCWGG 1 cut(s) 488
BstPAI GACNNNNGTC 1 cut(s) 92
BstSCI CCNGG 3 cut(s) 486, 651, 693
BstSLI GKGCMC 1 cut(s) 1140
BstUI CGCG 4 cut(s) 600, 609, 611, 920
BstV1I GCAGC 4 cut(s) 554, 574, 668, 853
BstX2I RGATCY 2 cut(s) 965, 994
BstYI RGATCY 2 cut(s) 965, 994
BstZI CGGCCG 2 cut(s) 654, 828
BsuI GTATCC 1 cut(s) 355
BsuRI GGCC 5 cut(s) 656, 692, 727, 830, 1138
BtgZI GCGATG 2 cut(s) 201, 863
BtsCI GGATG 3 cut(s) 459, 708, 994
BtsI GCAGTG 1 cut(s) 1054
BtsIMutI CAGTG 2 cut(s) 738, 1054
Cac8I GCNNGC 2 cut(s) 890, 1075
CfoI GCGC 5 cut(s) 567, 602, 611, 663, 877
Cfr10I RCCGGY 3 cut(s) 223, 706, 1073
Cfr13I GGNCC 5 cut(s) 691, 726, 746, 1136, 1137
CseI GACGC 2 cut(s) 322, 559
Csp6I GTAC 1 cut(s) 478
CspAI ACCGGT 1 cut(s) 223
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 2 cut(s) 131, 730
DpnI GATC 6 cut(s) 65, 357, 789, 799, 967, 996
DpnII GATC 6 cut(s) 63, 355, 787, 797, 965, 994
EaeI YGGCCR 2 cut(s) 654, 828
EagI CGGCCG 2 cut(s) 654, 828
Eam1104I CTCTTC 2 cut(s) 408, 464
EarI CTCTTC 2 cut(s) 408, 464
EciI GGCGGA 1 cut(s) 416
Ecl136II GAGCTC 1 cut(s) 186
EclXI CGGCCG 2 cut(s) 654, 828
Eco24I GRGCYC 5 cut(s) 145, 188, 768, 933, 1140
Eco47I GGWCC 1 cut(s) 746
Eco47III AGCGCT 1 cut(s) 566
Eco52I CGGCCG 2 cut(s) 654, 828
Eco53kI GAGCTC 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 270
EcoICRI GAGCTC 1 cut(s) 186
EcoO109I RGGNCCY 2 cut(s) 726, 1137
EcoRII CCWGG 1 cut(s) 486
EcoT38I GRGCYC 5 cut(s) 145, 188, 768, 933, 1140
Esp3I CGTCTC 2 cut(s) 366, 401
FaiI YATR 2 cut(s) 526, 884
FaqI GGGAC 2 cut(s) 881, 1145
FauI CCCGC 1 cut(s) 683
FbaI TGATCA 2 cut(s) 63, 355
Fnu4HI GCNGC 7 cut(s) 111, 563, 568, 679, 682, 842, 921
FokI GGATG 3 cut(s) 466, 715, 1001
FriOI GRGCYC 5 cut(s) 145, 188, 768, 933, 1140
Fsp4HI GCNGC 7 cut(s) 111, 563, 568, 679, 682, 842, 921
FspBI CTAG 1 cut(s) 138
GlaI GCGC 5 cut(s) 566, 601, 610, 662, 876
GluI GCNGC 7 cut(s) 111, 563, 568, 679, 682, 842, 921
GsuI CTGGAG 1 cut(s) 145
HaeII RGCGCY 1 cut(s) 568
HaeIII GGCC 5 cut(s) 656, 692, 727, 830, 1138
HapII CCGG 6 cut(s) 224, 653, 689, 695, 707, 1074
HgaI GACGC 2 cut(s) 322, 559
HhaI GCGC 5 cut(s) 567, 602, 611, 663, 877
Hin1I GRCGYC 2 cut(s) 174, 333
Hin6I GCGC 5 cut(s) 565, 600, 609, 661, 875
HinP1I GCGC 5 cut(s) 565, 600, 609, 661, 875
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HinfI GANTC 5 cut(s) 17, 242, 549, 627, 895
HpaII CCGG 6 cut(s) 224, 653, 689, 695, 707, 1074
HphI GGTGA 7 cut(s) 58, 97, 395, 401, 549, 721, 1066
Hpy166II GTNNAC 2 cut(s) 396, 430
Hpy188I TCNGA 1 cut(s) 134
Hpy188III TCNNGA 8 cut(s) 26, 85, 124, 181, 209, 359, 749, 769
Hpy8I GTNNAC 2 cut(s) 396, 430
Hpy99I CGWCG 6 cut(s) 104, 176, 179, 518, 575, 829
HpyAV CCTTC 5 cut(s) 143, 380, 717, 815, 920
HpyCH4III ACNGT 4 cut(s) 70, 232, 499, 542
HpyCH4IV ACGT 4 cut(s) 48, 174, 375, 513
HpyCH4V TGCA 5 cut(s) 546, 736, 841, 1005, 1096
HpyF10VI GCNNNNNNNGC 6 cut(s) 281, 606, 608, 667, 733, 827
HpyF3I CTNAG 2 cut(s) 131, 730
HpySE526I ACGT 4 cut(s) 48, 174, 375, 513
Hsp92I GRCGYC 2 cut(s) 174, 333
HspAI GCGC 5 cut(s) 565, 600, 609, 661, 875
KroI GCCGGC 1 cut(s) 1073
KroNI GCCGGC 1 cut(s) 1075
Ksp22I TGATCA 2 cut(s) 63, 355
Kzo9I GATC 6 cut(s) 63, 355, 787, 797, 965, 994
LmnI GCTCC 3 cut(s) 268, 936, 942
Lsp1109I GCAGC 4 cut(s) 554, 574, 668, 853
LweI GCATC 3 cut(s) 693, 731, 886
MaeI CTAG 1 cut(s) 138
MaeII ACGT 4 cut(s) 48, 174, 375, 513
MaeIII GTNAC 2 cut(s) 103, 226
MalI GATC 6 cut(s) 65, 357, 789, 799, 967, 996
MboI GATC 6 cut(s) 63, 355, 787, 797, 965, 994
MboII GAAGA 5 cut(s) 192, 320, 425, 481, 636
MfeI CAATTG 1 cut(s) 664
MflI RGATCY 2 cut(s) 965, 994
MhlI GDGCHC 6 cut(s) 145, 188, 277, 768, 933, 1140
MluCI AATT 3 cut(s) 5, 338, 664
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 192
MroNI GCCGGC 1 cut(s) 1073
MseI TTAA 1 cut(s) 504
MspA1I CMGCKG 2 cut(s) 681, 844
MspI CCGG 6 cut(s) 224, 653, 689, 695, 707, 1074
MspR9I CCNGG 3 cut(s) 488, 653, 695
MunI CAATTG 1 cut(s) 664
MvaI CCWGG 1 cut(s) 488
MvnI CGCG 4 cut(s) 600, 609, 611, 920
MwoI GCNNNNNNNGC 6 cut(s) 281, 606, 608, 667, 733, 827
NaeI GCCGGC 1 cut(s) 1075
NciI CCSGG 2 cut(s) 653, 695
NdeII GATC 6 cut(s) 63, 355, 787, 797, 965, 994
NgoMIV GCCGGC 1 cut(s) 1073
NlaIV GGNNCC 5 cut(s) 485, 693, 932, 1138, 1139
NmeAIII GCCGAG 2 cut(s) 682, 856
NmuCI GTSAC 2 cut(s) 103, 226
PaeR7I CTCGAG 1 cut(s) 270
PcsI WCGNNNNNNNCGW 1 cut(s) 513
PdiI GCCGGC 1 cut(s) 1075
PfeI GAWTC 4 cut(s) 17, 549, 627, 895
PflFI GACNNNGTC 1 cut(s) 176
PinAI ACCGGT 1 cut(s) 223
PkrI GCNGC 7 cut(s) 112, 564, 569, 680, 683, 843, 922
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
PshAI GACNNNNGTC 1 cut(s) 92
Psp124BI GAGCTC 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 486
PspGI CCWGG 1 cut(s) 486
PspN4I GGNNCC 5 cut(s) 485, 693, 932, 1138, 1139
PspOMI GGGCCC 1 cut(s) 1136
PspPI GGNCC 5 cut(s) 691, 726, 746, 1136, 1137
PspXI VCTCGAGB 1 cut(s) 270
PsuI RGATCY 2 cut(s) 965, 994
PsyI GACNNNGTC 1 cut(s) 176
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
SacI GAGCTC 1 cut(s) 188
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 7 cut(s) 111, 563, 568, 679, 682, 842, 921
Sau3AI GATC 6 cut(s) 63, 355, 787, 797, 965, 994
Sau96I GGNCC 5 cut(s) 691, 726, 746, 1136, 1137
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 3 cut(s) 488, 653, 695
SduI GDGCHC 6 cut(s) 145, 188, 277, 768, 933, 1140
SfaNI GCATC 3 cut(s) 693, 731, 886
Sfr274I CTCGAG 1 cut(s) 270
SinI GGWCC 1 cut(s) 746
SlaI CTCGAG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 270
SmoI CTYRAG 1 cut(s) 270
Sse9I AATT 3 cut(s) 5, 338, 664
SspMI CTAG 1 cut(s) 138
SstI GAGCTC 1 cut(s) 188
StyD4I CCNGG 3 cut(s) 486, 651, 693
TaaI ACNGT 4 cut(s) 70, 232, 499, 542
TaiI ACGT 4 cut(s) 51, 177, 378, 516
TaqI TCGA 4 cut(s) 27, 42, 271, 796
TasI AATT 3 cut(s) 5, 338, 664
TauI GCSGC 3 cut(s) 113, 681, 923
TfiI GAWTC 4 cut(s) 17, 549, 627, 895
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TscAI CASTG 2 cut(s) 738, 1054
TseFI GTSAC 2 cut(s) 103, 226
TseI GCWGC 4 cut(s) 562, 567, 681, 841
Tsp45I GTSAC 2 cut(s) 103, 226
TspDTI ATGAA 3 cut(s) 17, 192, 279
TspGWI ACGGA 3 cut(s) 330, 384, 425
TspRI CASTG 2 cut(s) 738, 1054
Tth111I GACNNNGTC 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 746
XapI RAATTY 2 cut(s) 5, 338
XhoI CTCGAG 1 cut(s) 270
XspI CTAG 1 cut(s) 138
ZraI GACGTC 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.