RLG00000016590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012977
Physical Location & Seq
Reverse (-)
8007549 .. 8008130
582 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016590

Sequence Viewer

Length: 582 bp
ATGAAATTCGTGTTGGATTCTCCTCTCGAAGCTCTCGCTTTAGACTACGTTAGCTTCGGGTTGATCACCGTTATCAATAGTCTCTGGACTTGGGTCGCCGTCGTCACCGCCGCCGTTAGCTTCTGGAGGCTCAGACCGAGAGCCCTTGAAGGCTTGAAGTTCCACTCCAACGACGTCGTCAAGGGCTCAAATGGGTGTTCTTCATTTCCTGAAACATCGCCACCGGTCACGGTGGAGGAGGAGTCGCCAAGCTCGGTTTCAGCTCCATCTCGAGCACCAGTAGCCGTTTCATCATCAGGTAGATTTGAAGATGACGGAGGTTTGACGAAAGGCGTCAAGTTTACATTGTGTTTTGATGAGGATACAAACGGAGACGTTGGCGTTGAAGGTGAGTTGACGGCGGAGGAGACGGAAGAGAGTGGCGGTGTGAACTGGTGGGAGAGTGGTTTGAGGATGAGGACGGGGGAAAAGAGTTGGTACAGGTGCCAGGATTTGACGGTGTTTAACGGCAACGTCGTTAGGTTATGGGATAATAATCACGGTTGCAGAGTCAACTCACCGCAGCGCTGCGTCGTTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

21.21

Weight (kDa)

4.75

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012977)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43110 AT5G20790 AT5G20790
fragaria_vesca FvH4_1g09230
malus_domestica MD02G1099300.v1.1 MD15G1222300.v1.1
prunus_persica Prupe.7G193600_v2.0.a1
pyrus_communis pycom02g07740
rosa_chinensis RchiOBHm_Chr2g0095761
rosa_laevigata RLG00000016590
rosa_multiflora Rmu_sc0005941.1_g000003
rosa_roxburghii Rroxscaffold_2G00146120
rosa_rugosa Rorug02G0053000
rosa_samantha Rh2AG101400 Rh2BG103100 Rh2CG105400 Rh2DG102800
rosa_wichuraiana Rw2G007690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 177
AccB1I GGYRCC 1 cut(s) 483
AciI CCGC 5 cut(s) 108, 111, 401, 423, 560
AcsI RAATTY 1 cut(s) 5
AcyI GRCGYC 2 cut(s) 174, 333
AfaI GTAC 1 cut(s) 479
AfeI AGCGCT 1 cut(s) 566
AgeI ACCGGT 1 cut(s) 223
AgsI TTSAA 4 cut(s) 149, 157, 308, 386
AjnI CCWGG 1 cut(s) 486
AjuI GAANNNNNNNTTGG 3 cut(s) 28, 241, 273
AluBI AGCT 5 cut(s) 32, 54, 120, 252, 263
AluI AGCT 5 cut(s) 32, 54, 120, 252, 263
Alw21I GWGCWC 1 cut(s) 277
Alw26I GTCTC 3 cut(s) 86, 366, 401
Ama87I CYCGRG 1 cut(s) 270
Aor51HI AGCGCT 1 cut(s) 566
ApeKI GCWGC 2 cut(s) 562, 567
ApoI RAATTY 1 cut(s) 5
AsiGI ACCGGT 1 cut(s) 223
AspLEI GCGC 1 cut(s) 567
AsuHPI GGTGA 4 cut(s) 58, 97, 401, 549
AvaI CYCGRG 1 cut(s) 270
BanI GGYRCC 1 cut(s) 483
BanII GRGCYC 2 cut(s) 145, 188
Bbv12I GWGCWC 1 cut(s) 277
BbvI GCAGC 2 cut(s) 554, 574
BccI CCATC 1 cut(s) 274
BceAI ACGGC 5 cut(s) 83, 98, 269, 414, 523
BciT130I CCWGG 1 cut(s) 488
BciVI GTATCC 1 cut(s) 355
BclI TGATCA 1 cut(s) 63
BcoDI GTCTC 3 cut(s) 86, 366, 401
BfoI RGCGCY 1 cut(s) 568
BfuI GTATCC 1 cut(s) 355
BisI GCNGC 3 cut(s) 111, 563, 568
BlsI GCNGC 3 cut(s) 112, 564, 569
Bme1390I CCNGG 1 cut(s) 488
BmeT110I CYCGRG 1 cut(s) 270
BmiI GGNNCC 1 cut(s) 485
BmrFI CCNGG 1 cut(s) 488
BoxI GACNNNNGTC 1 cut(s) 92
BpmI CTGGAG 1 cut(s) 145
BsaBI GATNNNNATC 1 cut(s) 534
BsaHI GRCGYC 2 cut(s) 174, 333
BsaWI WCCGGW 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bse118I RCCGGY 1 cut(s) 223
Bse1I ACTGG 2 cut(s) 278, 437
Bse8I GATNNNNATC 1 cut(s) 534
BseBI CCWGG 1 cut(s) 488
BseGI GGATG 1 cut(s) 459
BseJI GATNNNNATC 1 cut(s) 534
BseMII CTCAG 1 cut(s) 145
BseNI ACTGG 2 cut(s) 278, 437
BseRI GAGGAG 4 cut(s) 12, 251, 254, 419
BseXI GCAGC 2 cut(s) 554, 574
BshNI GGYRCC 1 cut(s) 483
BshTI ACCGGT 1 cut(s) 223
BsiHKAI GWGCWC 1 cut(s) 277
BsiHKCI CYCGRG 1 cut(s) 270
BsiSI CCGG 1 cut(s) 224
BsmAI GTCTC 3 cut(s) 86, 366, 401
BsmBI CGTCTC 2 cut(s) 366, 401
BsoBI CYCGRG 1 cut(s) 270
Bsp1286I GDGCHC 3 cut(s) 145, 188, 277
Bsp143I GATC 1 cut(s) 63
BspACI CCGC 5 cut(s) 108, 111, 401, 423, 560
BspCNI CTCAG 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 485
BspT107I GGYRCC 1 cut(s) 483
BsrFI RCCGGY 1 cut(s) 223
BsrI ACTGG 2 cut(s) 278, 437
BssAI RCCGGY 1 cut(s) 223
BssMI GATC 1 cut(s) 63
BssNI GRCGYC 2 cut(s) 174, 333
Bst2UI CCWGG 1 cut(s) 488
Bst4CI ACNGT 4 cut(s) 70, 232, 499, 542
Bst6I CTCTTC 1 cut(s) 408
BstACI GRCGYC 2 cut(s) 174, 333
BstDEI CTNAG 1 cut(s) 131
BstF5I GGATG 1 cut(s) 459
BstH2I RGCGCY 1 cut(s) 568
BstHHI GCGC 1 cut(s) 567
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 3 cut(s) 86, 366, 401
BstMBI GATC 1 cut(s) 63
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstNI CCWGG 1 cut(s) 488
BstPAI GACNNNNGTC 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 486
BstV1I GCAGC 2 cut(s) 554, 574
BsuI GTATCC 1 cut(s) 355
BtgZI GCGATG 1 cut(s) 201
BtsCI GGATG 1 cut(s) 459
CfoI GCGC 1 cut(s) 567
Cfr10I RCCGGY 1 cut(s) 223
CseI GACGC 2 cut(s) 322, 559
Csp6I GTAC 1 cut(s) 478
CspAI ACCGGT 1 cut(s) 223
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 1 cut(s) 131
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
EciI GGCGGA 1 cut(s) 416
Eco24I GRGCYC 2 cut(s) 145, 188
Eco47III AGCGCT 1 cut(s) 566
Eco88I CYCGRG 1 cut(s) 270
EcoRII CCWGG 1 cut(s) 486
EcoT38I GRGCYC 2 cut(s) 145, 188
Esp3I CGTCTC 2 cut(s) 366, 401
FaiI YATR 1 cut(s) 526
FbaI TGATCA 1 cut(s) 63
Fnu4HI GCNGC 3 cut(s) 111, 563, 568
FokI GGATG 1 cut(s) 466
FriOI GRGCYC 2 cut(s) 145, 188
Fsp4HI GCNGC 3 cut(s) 111, 563, 568
GlaI GCGC 1 cut(s) 566
GluI GCNGC 3 cut(s) 111, 563, 568
GsuI CTGGAG 1 cut(s) 145
HaeII RGCGCY 1 cut(s) 568
HapII CCGG 1 cut(s) 224
HgaI GACGC 2 cut(s) 322, 559
HhaI GCGC 1 cut(s) 567
Hin1I GRCGYC 2 cut(s) 174, 333
Hin6I GCGC 1 cut(s) 565
HinP1I GCGC 1 cut(s) 565
HincII GTYRAC 2 cut(s) 396, 553
HindII GTYRAC 2 cut(s) 396, 553
HinfI GANTC 3 cut(s) 17, 242, 549
HpaII CCGG 1 cut(s) 224
HphI GGTGA 4 cut(s) 58, 97, 401, 549
Hpy166II GTNNAC 4 cut(s) 342, 396, 430, 553
Hpy188I TCNGA 1 cut(s) 134
Hpy188III TCNNGA 5 cut(s) 26, 85, 124, 209, 270
Hpy8I GTNNAC 4 cut(s) 342, 396, 430, 553
Hpy99I CGWCG 5 cut(s) 104, 176, 179, 518, 575
HpyAV CCTTC 2 cut(s) 143, 380
HpyCH4III ACNGT 4 cut(s) 70, 232, 499, 542
HpyCH4IV ACGT 4 cut(s) 48, 174, 375, 513
HpyCH4V TGCA 1 cut(s) 546
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 1 cut(s) 131
HpySE526I ACGT 4 cut(s) 48, 174, 375, 513
Hsp92I GRCGYC 2 cut(s) 174, 333
HspAI GCGC 1 cut(s) 565
Ksp22I TGATCA 1 cut(s) 63
Kzo9I GATC 1 cut(s) 63
LmnI GCTCC 1 cut(s) 268
Lsp1109I GCAGC 2 cut(s) 554, 574
MaeII ACGT 4 cut(s) 48, 174, 375, 513
MaeIII GTNAC 2 cut(s) 103, 226
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 3 cut(s) 192, 320, 425
MhlI GDGCHC 3 cut(s) 145, 188, 277
MluCI AATT 1 cut(s) 5
MlyI GAGTC 2 cut(s) 251, 558
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 9 cut(s) 33, 120, 229, 232, 311, 352, 397, 444, 450
MseI TTAA 1 cut(s) 504
MspI CCGG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 488
MvaI CCWGG 1 cut(s) 488
MwoI GCNNNNNNNGC 1 cut(s) 281
NdeII GATC 1 cut(s) 63
NlaIV GGNNCC 1 cut(s) 485
NmuCI GTSAC 2 cut(s) 103, 226
PaeR7I CTCGAG 1 cut(s) 270
PcsI WCGNNNNNNNCGW 1 cut(s) 513
PfeI GAWTC 1 cut(s) 17
PflFI GACNNNGTC 1 cut(s) 176
PinAI ACCGGT 1 cut(s) 223
PkrI GCNGC 3 cut(s) 112, 564, 569
PleI GAGTC 2 cut(s) 250, 557
PpsI GAGTC 2 cut(s) 250, 557
PshAI GACNNNNGTC 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 486
PspGI CCWGG 1 cut(s) 486
PspN4I GGNNCC 1 cut(s) 485
PsyI GACNNNGTC 1 cut(s) 176
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 3 cut(s) 111, 563, 568
Sau3AI GATC 1 cut(s) 63
SchI GAGTC 2 cut(s) 251, 558
ScrFI CCNGG 1 cut(s) 488
SduI GDGCHC 3 cut(s) 145, 188, 277
Sfr274I CTCGAG 1 cut(s) 270
SlaI CTCGAG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 270
SmoI CTYRAG 1 cut(s) 270
Sse9I AATT 1 cut(s) 5
SsiI CCGC 5 cut(s) 108, 111, 401, 423, 560
StyD4I CCNGG 1 cut(s) 486
TaaI ACNGT 4 cut(s) 70, 232, 499, 542
TaiI ACGT 4 cut(s) 51, 177, 378, 516
TaqI TCGA 2 cut(s) 27, 271
TaqII GACCGA 1 cut(s) 151
TasI AATT 1 cut(s) 5
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TseFI GTSAC 2 cut(s) 103, 226
TseI GCWGC 2 cut(s) 562, 567
Tsp45I GTSAC 2 cut(s) 103, 226
TspDTI ATGAA 3 cut(s) 17, 192, 279
TspGWI ACGGA 3 cut(s) 330, 384, 425
Tth111I GACNNNGTC 1 cut(s) 176
XapI RAATTY 1 cut(s) 5
XhoI CTCGAG 1 cut(s) 270
ZraI GACGTC 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.