Rh2BG103100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0012977
Physical Location & Seq
Reverse (-)
8538295 .. 8539555
1261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG103100.1

Sequence Viewer

Length: 573 bp
ATGAAATTCGTGTTGGATTCTCCTCTCGAAGCTCTCGCTTTCGACTACGTTAGCTTCGGGTTGATCACCGCTATCAATAGTCTCTGGACTTGGGTCGCCGTCGTCACCGCCGCCGTTAGCTTCTGGAGGCTCAGACCTAGAGCCCTTGAAGGCTTGAAGTTCCACTCCAACGACGTCGTCAAGAGCTCAAATGGGTGTTCTTCATTTCCTGAAACATCGCCACCGGTCACGGTGGAGGAGGAGTCGCCAAGCTCGGTTTCAGCTCCATCTCGAGCACCAGTAGCCGTTTCATCATCAGGTAGATTTGAAGATGACGGAGGTTTGACGAAAGGCGTCAAGTTTACATTGTATTTTGATGAGGATACAAACGGAGACGTTGGCGGTGAAGGTGAGTTGACGGCGGAGGAGACGGAAGAGAGTGGCGGTGTGAACTGGTGGGAGAGTGGTTTGAGGATGAGGACGGGGGAGAAGAGTTGGTACAGGTGCCAGGATTTGACGGTGTTTAACGGCAACGTCGTTAGGTTATGGGATAATAATCACGGTTGCAGAATCAACTGTAGTTCAATTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

20.84

Weight (kDa)

4.75

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012977)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43110 AT5G20790 AT5G20790
fragaria_vesca FvH4_1g09230
malus_domestica MD02G1099300.v1.1 MD15G1222300.v1.1
prunus_persica Prupe.7G193600_v2.0.a1
pyrus_communis pycom02g07740
rosa_chinensis RchiOBHm_Chr2g0095761
rosa_laevigata RLG00000016590
rosa_multiflora Rmu_sc0005941.1_g000003
rosa_roxburghii Rroxscaffold_2G00146120
rosa_rugosa Rorug02G0053000
rosa_samantha Rh2AG101400 Rh2BG103100 Rh2CG105400 Rh2DG102800
rosa_wichuraiana Rw2G007690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 177
AccB1I GGYRCC 1 cut(s) 483
AciI CCGC 6 cut(s) 69, 108, 111, 381, 401, 423
AcsI RAATTY 1 cut(s) 5
AcyI GRCGYC 2 cut(s) 174, 333
AfaI GTAC 1 cut(s) 479
AgeI ACCGGT 1 cut(s) 223
AgsI TTSAA 4 cut(s) 149, 157, 308, 564
AjnI CCWGG 1 cut(s) 486
AjuI GAANNNNNNNTTGG 3 cut(s) 28, 241, 273
AluBI AGCT 6 cut(s) 32, 54, 120, 186, 252, 263
AluI AGCT 6 cut(s) 32, 54, 120, 186, 252, 263
Alw21I GWGCWC 2 cut(s) 188, 277
Alw26I GTCTC 3 cut(s) 86, 366, 401
Ama87I CYCGRG 1 cut(s) 270
ApoI RAATTY 1 cut(s) 5
AsiGI ACCGGT 1 cut(s) 223
AsuHPI GGTGA 4 cut(s) 58, 97, 395, 401
AvaI CYCGRG 1 cut(s) 270
BanI GGYRCC 1 cut(s) 483
BanII GRGCYC 2 cut(s) 145, 188
BarI GAAGNNNNNNTAC 2 cut(s) 461, 493
Bbv12I GWGCWC 2 cut(s) 188, 277
BccI CCATC 1 cut(s) 274
BceAI ACGGC 5 cut(s) 83, 98, 269, 414, 523
BciT130I CCWGG 1 cut(s) 488
BciVI GTATCC 1 cut(s) 355
BclI TGATCA 1 cut(s) 63
BcoDI GTCTC 3 cut(s) 86, 366, 401
BfaI CTAG 1 cut(s) 138
BfmI CTRYAG 1 cut(s) 556
BfuI GTATCC 1 cut(s) 355
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 488
BmeT110I CYCGRG 1 cut(s) 270
BmiI GGNNCC 1 cut(s) 485
BmrFI CCNGG 1 cut(s) 488
BoxI GACNNNNGTC 1 cut(s) 92
BpmI CTGGAG 1 cut(s) 145
BsaBI GATNNNNATC 1 cut(s) 534
BsaHI GRCGYC 2 cut(s) 174, 333
BsaWI WCCGGW 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bse118I RCCGGY 1 cut(s) 223
Bse1I ACTGG 2 cut(s) 278, 437
Bse8I GATNNNNATC 1 cut(s) 534
BseBI CCWGG 1 cut(s) 488
BseGI GGATG 1 cut(s) 459
BseJI GATNNNNATC 1 cut(s) 534
BseMII CTCAG 1 cut(s) 145
BseNI ACTGG 2 cut(s) 278, 437
BseRI GAGGAG 4 cut(s) 12, 251, 254, 419
BshNI GGYRCC 1 cut(s) 483
BshTI ACCGGT 1 cut(s) 223
BsiHKAI GWGCWC 2 cut(s) 188, 277
BsiHKCI CYCGRG 1 cut(s) 270
BsiSI CCGG 1 cut(s) 224
BsmAI GTCTC 3 cut(s) 86, 366, 401
BsmBI CGTCTC 2 cut(s) 366, 401
BsoBI CYCGRG 1 cut(s) 270
Bsp1286I GDGCHC 3 cut(s) 145, 188, 277
Bsp143I GATC 1 cut(s) 63
BspACI CCGC 6 cut(s) 69, 108, 111, 381, 401, 423
BspCNI CTCAG 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 485
BspT107I GGYRCC 1 cut(s) 483
BsrFI RCCGGY 1 cut(s) 223
BsrI ACTGG 2 cut(s) 278, 437
BssAI RCCGGY 1 cut(s) 223
BssMI GATC 1 cut(s) 63
BssNI GRCGYC 2 cut(s) 174, 333
Bst2UI CCWGG 1 cut(s) 488
Bst4CI ACNGT 4 cut(s) 232, 499, 542, 557
Bst6I CTCTTC 2 cut(s) 408, 464
BstACI GRCGYC 2 cut(s) 174, 333
BstDEI CTNAG 1 cut(s) 131
BstF5I GGATG 1 cut(s) 459
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 3 cut(s) 86, 366, 401
BstMBI GATC 1 cut(s) 63
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstNI CCWGG 1 cut(s) 488
BstPAI GACNNNNGTC 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 486
BstSFI CTRYAG 1 cut(s) 556
BsuI GTATCC 1 cut(s) 355
BtgZI GCGATG 1 cut(s) 201
BtsCI GGATG 1 cut(s) 459
Cfr10I RCCGGY 1 cut(s) 223
CseI GACGC 1 cut(s) 322
Csp6I GTAC 1 cut(s) 478
CspAI ACCGGT 1 cut(s) 223
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 1 cut(s) 131
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
Eam1104I CTCTTC 2 cut(s) 408, 464
EarI CTCTTC 2 cut(s) 408, 464
EciI GGCGGA 1 cut(s) 416
Ecl136II GAGCTC 1 cut(s) 186
Eco24I GRGCYC 2 cut(s) 145, 188
Eco53kI GAGCTC 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 270
EcoICRI GAGCTC 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 486
EcoT38I GRGCYC 2 cut(s) 145, 188
Esp3I CGTCTC 2 cut(s) 366, 401
FaiI YATR 1 cut(s) 526
FbaI TGATCA 1 cut(s) 63
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 1 cut(s) 466
FriOI GRGCYC 2 cut(s) 145, 188
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 138
GluI GCNGC 1 cut(s) 111
GsuI CTGGAG 1 cut(s) 145
HapII CCGG 1 cut(s) 224
HgaI GACGC 1 cut(s) 322
Hin1I GRCGYC 2 cut(s) 174, 333
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HinfI GANTC 3 cut(s) 17, 242, 549
HpaII CCGG 1 cut(s) 224
HphI GGTGA 4 cut(s) 58, 97, 395, 401
Hpy166II GTNNAC 3 cut(s) 342, 396, 430
Hpy188I TCNGA 1 cut(s) 134
Hpy188III TCNNGA 6 cut(s) 26, 85, 124, 181, 209, 270
Hpy8I GTNNAC 3 cut(s) 342, 396, 430
Hpy99I CGWCG 4 cut(s) 104, 176, 179, 518
HpyAV CCTTC 2 cut(s) 143, 380
HpyCH4III ACNGT 4 cut(s) 232, 499, 542, 557
HpyCH4IV ACGT 4 cut(s) 48, 174, 375, 513
HpyCH4V TGCA 1 cut(s) 546
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 1 cut(s) 131
HpySE526I ACGT 4 cut(s) 48, 174, 375, 513
Hsp92I GRCGYC 2 cut(s) 174, 333
Ksp22I TGATCA 1 cut(s) 63
Kzo9I GATC 1 cut(s) 63
LmnI GCTCC 1 cut(s) 268
MaeI CTAG 1 cut(s) 138
MaeII ACGT 4 cut(s) 48, 174, 375, 513
MaeIII GTNAC 2 cut(s) 103, 226
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 4 cut(s) 192, 320, 425, 481
MhlI GDGCHC 3 cut(s) 145, 188, 277
MluCI AATT 2 cut(s) 5, 564
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 9 cut(s) 33, 120, 229, 232, 311, 352, 397, 444, 450
MseI TTAA 2 cut(s) 504, 567
MspI CCGG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 488
MvaI CCWGG 1 cut(s) 488
MwoI GCNNNNNNNGC 1 cut(s) 281
NdeII GATC 1 cut(s) 63
NlaIV GGNNCC 1 cut(s) 485
NmuCI GTSAC 2 cut(s) 103, 226
PaeR7I CTCGAG 1 cut(s) 270
PcsI WCGNNNNNNNCGW 1 cut(s) 513
PfeI GAWTC 2 cut(s) 17, 549
PflFI GACNNNGTC 1 cut(s) 176
PinAI ACCGGT 1 cut(s) 223
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
PshAI GACNNNNGTC 1 cut(s) 92
Psp124BI GAGCTC 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 486
PspGI CCWGG 1 cut(s) 486
PspN4I GGNNCC 1 cut(s) 485
PsyI GACNNNGTC 1 cut(s) 176
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
SacI GAGCTC 1 cut(s) 188
SaqAI TTAA 2 cut(s) 504, 567
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 63
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 488
SduI GDGCHC 3 cut(s) 145, 188, 277
SfcI CTRYAG 1 cut(s) 556
Sfr274I CTCGAG 1 cut(s) 270
SlaI CTCGAG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 270
SmoI CTYRAG 1 cut(s) 270
Sse9I AATT 2 cut(s) 5, 564
SsiI CCGC 6 cut(s) 69, 108, 111, 381, 401, 423
SspMI CTAG 1 cut(s) 138
SstI GAGCTC 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 486
TaaI ACNGT 4 cut(s) 232, 499, 542, 557
TaiI ACGT 4 cut(s) 51, 177, 378, 516
TaqI TCGA 3 cut(s) 27, 42, 271
TasI AATT 2 cut(s) 5, 564
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 2 cut(s) 17, 549
Tru1I TTAA 2 cut(s) 504, 567
Tru9I TTAA 2 cut(s) 504, 567
TseFI GTSAC 2 cut(s) 103, 226
Tsp45I GTSAC 2 cut(s) 103, 226
TspDTI ATGAA 3 cut(s) 17, 192, 279
TspGWI ACGGA 3 cut(s) 330, 384, 425
Tth111I GACNNNGTC 1 cut(s) 176
XapI RAATTY 1 cut(s) 5
XhoI CTCGAG 1 cut(s) 270
XspI CTAG 1 cut(s) 138
ZraI GACGTC 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.