AT5G20790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012977
Physical Location & Seq
Reverse (-)
7039674 .. 7040919
1246 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G20790.1

Sequence Viewer

Length: 582 bp
ATGTCGACTTTGGAATCTCCATTAGAGGCGTTGGCGTTTGAATACGCTAGCTTAGGTGTTTTCGCCGTCGTCAACAACGTCTGGACATGGATCGCCGTCGTGACTGCCGCTGTCAGCTTCTGGAGGATCAGAGTCACAACCATAGGAGTCGGAGACGGCCATGCATGTGTCTTGATAGAAGAATTAACCGGTTCTAAATCTGAAAACGAATCCGGTCGTCTCGAACCGAAATCAATAACCGGTCCGGTCAAAGAAACGGTTGCACGAGTGAAGGAAACGGTTACGAAAACGGAGCCGTTAATATGCGATGACGGAGTGACAAAGGGGAAGCTGACGATGTGCTACGAGGTAGACGTTGACGTTGACGGTGGGAGGTGTGTTAACGGAGATTTAACGGCAGTTAGCTACGGAGGAGGTTTGGGTAATTGTGGCGGGGATTGGTGGGAGAAATGGGATGGAGTGGTGAGGATGAGAAATGGTGATGACAGTTGGTACCGTTACGTGGATTTAACGGTGATTAATGGAAATGTGGTAAGGTTATGGGATGACAACAAAACACTAGTAACGGCGGCATGTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

20.97

Weight (kDa)

4.64

Isoelectric Point (pI)

22.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012977)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43110 AT5G20790 AT5G20790
fragaria_vesca FvH4_1g09230
malus_domestica MD02G1099300.v1.1 MD15G1222300.v1.1
prunus_persica Prupe.7G193600_v2.0.a1
pyrus_communis pycom02g07740
rosa_chinensis RchiOBHm_Chr2g0095761
rosa_laevigata RLG00000016590
rosa_multiflora Rmu_sc0005941.1_g000003
rosa_roxburghii Rroxscaffold_2G00146120
rosa_rugosa Rorug02G0053000
rosa_samantha Rh2AG101400 Rh2BG103100 Rh2CG105400 Rh2DG102800
rosa_wichuraiana Rw2G007690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 492
AccB1I GGYRCC 1 cut(s) 492
AccI GTMKAC 2 cut(s) 5, 351
AciI CCGC 3 cut(s) 108, 432, 569
AclWI GGATC 2 cut(s) 98, 134
AcoI YGGCCR 1 cut(s) 157
AfaI GTAC 1 cut(s) 494
AfiI CCNNNNNNNGG 1 cut(s) 502
AgeI ACCGGT 2 cut(s) 188, 239
AgsI TTSAA 1 cut(s) 41
AhlI ACTAGT 1 cut(s) 559
AluBI AGCT 4 cut(s) 51, 117, 331, 405
AluI AGCT 4 cut(s) 51, 117, 331, 405
Alw26I GTCTC 2 cut(s) 147, 224
AlwI GGATC 2 cut(s) 98, 134
AlwNI CAGNNNCTG 1 cut(s) 120
AoxI GGCC 1 cut(s) 157
AseI ATTAAT 1 cut(s) 519
AsiGI ACCGGT 2 cut(s) 188, 239
Asp718I GGTACC 1 cut(s) 492
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 3 cut(s) 475, 491, 526
AsuNHI GCTAGC 1 cut(s) 47
AvaII GGWCC 1 cut(s) 242
BanI GGYRCC 1 cut(s) 492
BauI CACGAG 1 cut(s) 264
BccI CCATC 1 cut(s) 449
BceAI ACGGC 5 cut(s) 50, 80, 172, 280, 411
BcoDI GTCTC 2 cut(s) 147, 224
BcuI ACTAGT 1 cut(s) 559
BfaI CTAG 2 cut(s) 48, 560
BisI GCNGC 2 cut(s) 108, 570
BlsI GCNGC 2 cut(s) 109, 571
Bme18I GGWCC 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 2 cut(s) 294, 494
BmtI GCTAGC 1 cut(s) 51
BpmI CTGGAG 1 cut(s) 142
Bpu10I CCTNAGC 1 cut(s) 52
BsaAI YACGTR 1 cut(s) 502
BsaWI WCCGGW 4 cut(s) 188, 212, 239, 244
Bsc4I CCNNNNNNNGG 1 cut(s) 502
Bse118I RCCGGY 2 cut(s) 188, 239
BseGI GGATG 3 cut(s) 460, 474, 550
BseLI CCNNNNNNNGG 1 cut(s) 502
BseRI GAGGAG 1 cut(s) 426
Bsh1285I CGRYCG 1 cut(s) 217
BshFI GGCC 1 cut(s) 159
BshNI GGYRCC 1 cut(s) 492
BshTI ACCGGT 2 cut(s) 188, 239
BsiEI CGRYCG 1 cut(s) 217
BsiSI CCGG 4 cut(s) 189, 213, 240, 245
BslI CCNNNNNNNGG 1 cut(s) 502
BsmAI GTCTC 2 cut(s) 147, 224
BsmBI CGTCTC 2 cut(s) 147, 224
BsnI GGCC 1 cut(s) 159
Bsp143I GATC 2 cut(s) 90, 126
BspACI CCGC 3 cut(s) 108, 432, 569
BspANI GGCC 1 cut(s) 159
BspLI GGNNCC 2 cut(s) 294, 494
BspOI GCTAGC 1 cut(s) 51
BspPI GGATC 2 cut(s) 98, 134
BspT107I GGYRCC 1 cut(s) 492
BsrFI RCCGGY 2 cut(s) 188, 239
BssAI RCCGGY 2 cut(s) 188, 239
BssMI GATC 2 cut(s) 90, 126
BssSI CACGAG 1 cut(s) 264
Bst2BI CACGAG 1 cut(s) 264
Bst4CI ACNGT 6 cut(s) 259, 280, 368, 488, 497, 514
BstBAI YACGTR 1 cut(s) 502
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 1 cut(s) 52
BstF5I GGATG 3 cut(s) 460, 474, 550
BstKTI GATC 2 cut(s) 93, 129
BstMAI GTCTC 2 cut(s) 147, 224
BstMBI GATC 2 cut(s) 90, 126
BstMCI CGRYCG 1 cut(s) 217
BstNSI RCATGY 2 cut(s) 168, 576
BsuRI GGCC 1 cut(s) 159
BtgZI GCGATG 1 cut(s) 321
BtsCI GGATG 3 cut(s) 460, 474, 550
Cac8I GCNNGC 1 cut(s) 49
CaiI CAGNNNCTG 1 cut(s) 120
Cfr10I RCCGGY 2 cut(s) 188, 239
Cfr13I GGNCC 1 cut(s) 242
CpoI CGGWCCG 1 cut(s) 242
Csp6I GTAC 1 cut(s) 493
CspAI ACCGGT 2 cut(s) 188, 239
CspI CGGWCCG 1 cut(s) 242
CviAII CATG 4 cut(s) 87, 161, 165, 573
CviJI RGCY 6 cut(s) 51, 117, 159, 295, 331, 405
CviKI_1 RGCY 6 cut(s) 51, 117, 159, 295, 331, 405
CviQI GTAC 1 cut(s) 493
DdeI CTNAG 1 cut(s) 52
DpnI GATC 2 cut(s) 92, 128
DpnII GATC 2 cut(s) 90, 126
EaeI YGGCCR 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 242
EcoT22I ATGCAT 1 cut(s) 166
Esp3I CGTCTC 2 cut(s) 147, 224
FaeI CATG 4 cut(s) 90, 164, 168, 576
FaiI YATR 7 cut(s) 88, 143, 162, 166, 304, 541, 574
FatI CATG 4 cut(s) 86, 160, 164, 572
FauI CCCGC 1 cut(s) 425
FblI GTMKAC 2 cut(s) 5, 351
Fnu4HI GCNGC 2 cut(s) 108, 570
FokI GGATG 3 cut(s) 467, 481, 557
Fsp4HI GCNGC 2 cut(s) 108, 570
FspBI CTAG 2 cut(s) 48, 560
GluI GCNGC 2 cut(s) 108, 570
GsuI CTGGAG 1 cut(s) 142
HaeIII GGCC 1 cut(s) 159
HapII CCGG 4 cut(s) 189, 213, 240, 245
Hin1II CATG 4 cut(s) 90, 164, 168, 576
HincII GTYRAC 5 cut(s) 6, 73, 358, 364, 382
HindII GTYRAC 5 cut(s) 6, 73, 358, 364, 382
HinfI GANTC 4 cut(s) 14, 132, 147, 209
HpaI GTTAAC 1 cut(s) 382
HpaII CCGG 4 cut(s) 189, 213, 240, 245
HphI GGTGA 3 cut(s) 475, 491, 526
Hpy166II GTNNAC 6 cut(s) 6, 73, 352, 358, 364, 382
Hpy188I TCNGA 3 cut(s) 131, 152, 202
Hpy188III TCNNGA 5 cut(s) 82, 100, 121, 172, 221
Hpy8I GTNNAC 6 cut(s) 6, 73, 352, 358, 364, 382
Hpy99I CGWCG 2 cut(s) 71, 101
HpyAV CCTTC 1 cut(s) 265
HpyCH4III ACNGT 6 cut(s) 259, 280, 368, 488, 497, 514
HpyCH4IV ACGT 4 cut(s) 78, 354, 360, 501
HpyCH4V TGCA 2 cut(s) 164, 263
HpyF3I CTNAG 1 cut(s) 52
HpySE526I ACGT 4 cut(s) 78, 354, 360, 501
Hsp92II CATG 4 cut(s) 90, 164, 168, 576
KpnI GGTACC 1 cut(s) 496
KspAI GTTAAC 1 cut(s) 382
Kzo9I GATC 2 cut(s) 90, 126
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 6 cut(s) 67, 106, 202, 226, 253, 258
MaeI CTAG 2 cut(s) 48, 560
MaeII ACGT 4 cut(s) 78, 354, 360, 501
MaeIII GTNAC 6 cut(s) 100, 133, 280, 316, 497, 562
MalI GATC 2 cut(s) 92, 128
MboI GATC 2 cut(s) 90, 126
MboII GAAGA 1 cut(s) 191
MluCI AATT 2 cut(s) 182, 424
MlyI GAGTC 2 cut(s) 141, 156
MmeI TCCRAC 1 cut(s) 130
MnlI CCTC 7 cut(s) 19, 117, 340, 366, 404, 407, 459
Mph1103I ATGCAT 1 cut(s) 166
MseI TTAA 6 cut(s) 185, 299, 381, 392, 509, 519
MslI CAYNNNNRTG 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 4 cut(s) 189, 213, 240, 245
NdeII GATC 2 cut(s) 90, 126
NheI GCTAGC 1 cut(s) 47
NlaIII CATG 4 cut(s) 90, 164, 168, 576
NlaIV GGNNCC 2 cut(s) 294, 494
NmuCI GTSAC 3 cut(s) 100, 133, 316
NsiI ATGCAT 1 cut(s) 166
NspI RCATGY 2 cut(s) 168, 576
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 351
PfeI GAWTC 2 cut(s) 14, 209
PinAI ACCGGT 2 cut(s) 188, 239
PkrI GCNGC 2 cut(s) 109, 571
PleI GAGTC 2 cut(s) 140, 155
PpsI GAGTC 2 cut(s) 140, 155
Ppu21I YACGTR 1 cut(s) 502
PshBI ATTAAT 1 cut(s) 519
PspN4I GGNNCC 2 cut(s) 294, 494
PspPI GGNCC 1 cut(s) 242
PstNI CAGNNNCTG 1 cut(s) 120
RsaI GTAC 1 cut(s) 494
RsaNI GTAC 1 cut(s) 493
RseI CAYNNNNRTG 1 cut(s) 165
Rsr2I CGGWCCG 1 cut(s) 242
RsrII CGGWCCG 1 cut(s) 242
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 6 cut(s) 185, 299, 381, 392, 509, 519
SatI GCNGC 2 cut(s) 108, 570
Sau3AI GATC 2 cut(s) 90, 126
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 2 cut(s) 141, 156
SinI GGWCC 1 cut(s) 242
SmiMI CAYNNNNRTG 1 cut(s) 165
SpeI ACTAGT 1 cut(s) 559
Sse9I AATT 2 cut(s) 182, 424
SsiI CCGC 3 cut(s) 108, 432, 569
SspMI CTAG 2 cut(s) 48, 560
TaaI ACNGT 6 cut(s) 259, 280, 368, 488, 497, 514
TaiI ACGT 4 cut(s) 81, 357, 363, 504
TaqI TCGA 2 cut(s) 5, 222
TasI AATT 2 cut(s) 182, 424
TauI GCSGC 2 cut(s) 110, 572
TfiI GAWTC 2 cut(s) 14, 209
Tru1I TTAA 6 cut(s) 185, 299, 381, 392, 509, 519
Tru9I TTAA 6 cut(s) 185, 299, 381, 392, 509, 519
TseFI GTSAC 3 cut(s) 100, 133, 316
Tsp45I GTSAC 3 cut(s) 100, 133, 316
TspGWI ACGGA 4 cut(s) 305, 327, 399, 423
VpaK11BI GGWCC 1 cut(s) 242
VspI ATTAAT 1 cut(s) 519
XceI RCATGY 2 cut(s) 168, 576
XmiI GTMKAC 2 cut(s) 5, 351
XspI CTAG 2 cut(s) 48, 560
Zsp2I ATGCAT 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.