Prupe.7G193600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0012977
Physical Location & Seq
Forward (+)
18411416 .. 18412489
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G193600.1

Sequence Viewer

Length: 627 bp
ATGAACTCTGTGTTGGATTCTCCTCTCGAAGCTCTTGCTTTCAACTATGTCAGCTTCGGATTGTTCACTGTTGTGAACAATTTGTGGACTTGGGTCGCCGTTTTGACGGCCGCCGTCAGCTTCTTGAGCCTCAGGCTCAGAGCCAGTACCAGAGCTGCCAGTACTGCTATCTCTTCTTCTTGTCTGTTCAACTCACCACCTTCCAATGACGACCGGAGCTCAAATGGGTCGTCACCGGTTCCGGAGATAACGCCTTCGGAAACTGCCGACGAGCCACCGCGCTCTGTTTTGTCTCCGGTGGCTGCGCCTTGTAAGTTTGAAGATGATAGAGTAGTAGTGACAAAAGGGTTGAAGTTCACTCTGTATTATGAGGATAACGCAGAAGGCCGCGTTGACCTAACGGCGGAGGAGGAAGAGGAGGAAGCGGAAGAGAGCGCCGGCGATGAGGCGGTGGCTGAGGGTTGTGGGGAGTGGTTGGAGGGTGTTTTGAGGCTGAGATTAGGGGAGATGGGTTGGTACAGGCACCAGGGCTTGACGGAGCTTAACGGTAACGTCGTTAGATTATGGGATGGTTGTAGAGTTGGCGAAAGGCACAGCTCATCAAAATCAACACACCGTGTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

22.75

Weight (kDa)

4.62

Isoelectric Point (pI)

54.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012977)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43110 AT5G20790 AT5G20790
fragaria_vesca FvH4_1g09230
malus_domestica MD02G1099300.v1.1 MD15G1222300.v1.1
prunus_persica Prupe.7G193600_v2.0.a1
pyrus_communis pycom02g07740
rosa_chinensis RchiOBHm_Chr2g0095761
rosa_laevigata RLG00000016590
rosa_multiflora Rmu_sc0005941.1_g000003
rosa_roxburghii Rroxscaffold_2G00146120
rosa_rugosa Rorug02G0053000
rosa_samantha Rh2AG101400 Rh2BG103100 Rh2CG105400 Rh2DG102800
rosa_wichuraiana Rw2G007690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 522
AccII CGCG 2 cut(s) 280, 390
AccIII TCCGGA 1 cut(s) 241
AciI CCGC 6 cut(s) 111, 278, 388, 404, 425, 449
AcoI YGGCCR 1 cut(s) 108
AdeI CACNNNGTG 1 cut(s) 617
AfaI GTAC 3 cut(s) 148, 163, 518
AfiI CCNNNNNNNGG 1 cut(s) 403
AgeI ACCGGT 1 cut(s) 235
AgsI TTSAA 4 cut(s) 43, 190, 320, 352
AjnI CCWGG 1 cut(s) 525
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AleI CACNNNNGTG 1 cut(s) 71
AluBI AGCT 7 cut(s) 32, 54, 120, 155, 219, 541, 597
AluI AGCT 7 cut(s) 32, 54, 120, 155, 219, 541, 597
Alw21I GWGCWC 1 cut(s) 221
Alw26I GTCTC 1 cut(s) 297
Aor13HI TCCGGA 1 cut(s) 241
AoxI GGCC 2 cut(s) 108, 385
ApeKI GCWGC 2 cut(s) 155, 302
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
AsiGI ACCGGT 1 cut(s) 235
AspLEI GCGC 3 cut(s) 282, 307, 437
AsuHPI GGTGA 2 cut(s) 186, 225
AxyI CCTNAGG 1 cut(s) 131
BanI GGYRCC 1 cut(s) 522
BanII GRGCYC 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 221
BbvCI CCTCAGC 1 cut(s) 456
BbvI GCAGC 2 cut(s) 142, 289
BccI CCATC 2 cut(s) 502, 563
BceAI ACGGC 4 cut(s) 83, 98, 123, 417
BcgI CGANNNNNNTGC 2 cut(s) 17, 51
BciT130I CCWGG 1 cut(s) 527
BcoDI GTCTC 1 cut(s) 297
BfoI RGCGCY 1 cut(s) 438
BisI GCNGC 4 cut(s) 111, 156, 303, 388
BlsI GCNGC 4 cut(s) 112, 157, 304, 389
BmcAI AGTACT 1 cut(s) 163
Bme1390I CCNGG 1 cut(s) 527
BmiI GGNNCC 2 cut(s) 240, 524
BmrFI CCNGG 1 cut(s) 527
BoxI GACNNNNGTC 1 cut(s) 92
Bpu10I CCTNAGC 1 cut(s) 456
BpuEI CTTGAG 1 cut(s) 145
BsaJI CCNNGG 1 cut(s) 526
BsaWI WCCGGW 4 cut(s) 213, 235, 241, 295
Bsc4I CCNNNNNNNGG 1 cut(s) 403
Bse118I RCCGGY 2 cut(s) 235, 437
Bse1I ACTGG 2 cut(s) 144, 159
Bse21I CCTNAGG 1 cut(s) 131
BseAI TCCGGA 1 cut(s) 241
BseBI CCWGG 1 cut(s) 527
BseDI CCNNGG 1 cut(s) 526
BseGI GGATG 1 cut(s) 574
BseLI CCNNNNNNNGG 1 cut(s) 403
BseMII CTCAG 4 cut(s) 145, 151, 447, 485
BseNI ACTGG 2 cut(s) 144, 159
BseRI GAGGAG 3 cut(s) 12, 422, 431
BseX3I CGGCCG 1 cut(s) 108
BseXI GCAGC 2 cut(s) 142, 289
Bsh1236I CGCG 2 cut(s) 280, 390
Bsh1285I CGRYCG 2 cut(s) 111, 214
BshFI GGCC 2 cut(s) 110, 387
BshNI GGYRCC 1 cut(s) 522
BshTI ACCGGT 1 cut(s) 235
BsiEI CGRYCG 2 cut(s) 111, 214
BsiHKAI GWGCWC 1 cut(s) 221
BsiSI CCGG 5 cut(s) 214, 236, 242, 296, 438
BslI CCNNNNNNNGG 1 cut(s) 403
BsmAI GTCTC 1 cut(s) 297
BsnI GGCC 2 cut(s) 110, 387
Bsp1286I GDGCHC 1 cut(s) 221
Bsp13I TCCGGA 1 cut(s) 241
BspACI CCGC 6 cut(s) 111, 278, 388, 404, 425, 449
BspANI GGCC 2 cut(s) 110, 387
BspCNI CTCAG 4 cut(s) 144, 150, 448, 486
BspEI TCCGGA 1 cut(s) 241
BspFNI CGCG 2 cut(s) 280, 390
BspLI GGNNCC 2 cut(s) 240, 524
BspT107I GGYRCC 1 cut(s) 522
BsrFI RCCGGY 2 cut(s) 235, 437
BsrI ACTGG 2 cut(s) 144, 159
BssAI RCCGGY 2 cut(s) 235, 437
BssECI CCNNGG 1 cut(s) 526
Bst2UI CCWGG 1 cut(s) 527
Bst4CI ACNGT 3 cut(s) 70, 548, 617
Bst6I CTCTTC 3 cut(s) 178, 408, 423
BstC8I GCNNGC 1 cut(s) 439
BstDEI CTNAG 4 cut(s) 131, 137, 456, 494
BstF5I GGATG 1 cut(s) 574
BstFNI CGCG 2 cut(s) 280, 390
BstH2I RGCGCY 1 cut(s) 438
BstHHI GCGC 3 cut(s) 282, 307, 437
BstMAI GTCTC 1 cut(s) 297
BstMCI CGRYCG 2 cut(s) 111, 214
BstMWI GCNNNNNNNGC 2 cut(s) 126, 164
BstNI CCWGG 1 cut(s) 527
BstPAI GACNNNNGTC 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 525
BstUI CGCG 2 cut(s) 280, 390
BstV1I GCAGC 2 cut(s) 142, 289
BstZI CGGCCG 1 cut(s) 108
Bsu36I CCTNAGG 1 cut(s) 131
BsuRI GGCC 2 cut(s) 110, 387
BtgZI GCGATG 1 cut(s) 456
BtsCI GGATG 1 cut(s) 574
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 1 cut(s) 439
CfoI GCGC 3 cut(s) 282, 307, 437
Cfr10I RCCGGY 2 cut(s) 235, 437
Csp6I GTAC 3 cut(s) 147, 162, 517
CspAI ACCGGT 1 cut(s) 235
CviAII CATG 1 cut(s) 622
CviQI GTAC 3 cut(s) 147, 162, 517
DdeI CTNAG 4 cut(s) 131, 137, 456, 494
DraIII CACNNNGTG 1 cut(s) 617
EaeI YGGCCR 1 cut(s) 108
EagI CGGCCG 1 cut(s) 108
Eam1104I CTCTTC 3 cut(s) 178, 408, 423
EarI CTCTTC 3 cut(s) 178, 408, 423
EciI GGCGGA 1 cut(s) 419
Ecl136II GAGCTC 1 cut(s) 219
EclXI CGGCCG 1 cut(s) 108
Eco24I GRGCYC 1 cut(s) 221
Eco52I CGGCCG 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 219
Eco81I CCTNAGG 1 cut(s) 131
EcoICRI GAGCTC 1 cut(s) 219
EcoRII CCWGG 1 cut(s) 525
EcoT38I GRGCYC 1 cut(s) 221
FaeI CATG 1 cut(s) 625
FaiI YATR 4 cut(s) 48, 369, 565, 623
FatI CATG 1 cut(s) 621
Fnu4HI GCNGC 4 cut(s) 111, 156, 303, 388
FokI GGATG 1 cut(s) 581
FriOI GRGCYC 1 cut(s) 221
Fsp4HI GCNGC 4 cut(s) 111, 156, 303, 388
GlaI GCGC 3 cut(s) 281, 306, 436
GluI GCNGC 4 cut(s) 111, 156, 303, 388
HaeII RGCGCY 1 cut(s) 438
HaeIII GGCC 2 cut(s) 110, 387
HapII CCGG 5 cut(s) 214, 236, 242, 296, 438
HhaI GCGC 3 cut(s) 282, 307, 437
Hin1II CATG 1 cut(s) 625
Hin6I GCGC 3 cut(s) 280, 305, 435
HinP1I GCGC 3 cut(s) 280, 305, 435
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 1 cut(s) 17
HpaII CCGG 5 cut(s) 214, 236, 242, 296, 438
HphI GGTGA 2 cut(s) 186, 225
Hpy166II GTNNAC 5 cut(s) 66, 76, 87, 357, 394
Hpy188I TCNGA 3 cut(s) 59, 140, 259
Hpy188III TCNNGA 3 cut(s) 26, 124, 242
Hpy8I GTNNAC 5 cut(s) 66, 76, 87, 357, 394
Hpy99I CGWCG 2 cut(s) 272, 557
HpyAV CCTTC 3 cut(s) 210, 264, 377
HpyCH4III ACNGT 3 cut(s) 70, 548, 617
HpyCH4IV ACGT 1 cut(s) 552
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 164
HpyF3I CTNAG 4 cut(s) 131, 137, 456, 494
HpySE526I ACGT 1 cut(s) 552
Hsp92II CATG 1 cut(s) 625
HspAI GCGC 3 cut(s) 280, 305, 435
Kpn2I TCCGGA 1 cut(s) 241
KroI GCCGGC 1 cut(s) 437
KroNI GCCGGC 1 cut(s) 439
LmnI GCTCC 2 cut(s) 216, 538
Lsp1109I GCAGC 2 cut(s) 142, 289
MaeII ACGT 1 cut(s) 552
MaeIII GTNAC 3 cut(s) 231, 337, 548
MboII GAAGA 5 cut(s) 165, 168, 332, 425, 440
MhlI GDGCHC 1 cut(s) 221
MluCI AATT 1 cut(s) 79
MmeI TCCRAC 1 cut(s) 456
MreI CGCCGGCG 1 cut(s) 437
MroI TCCGGA 1 cut(s) 241
MroNI GCCGGC 1 cut(s) 437
MseI TTAA 1 cut(s) 543
MslI CAYNNNNRTG 1 cut(s) 71
MspI CCGG 5 cut(s) 214, 236, 242, 296, 438
MspR9I CCNGG 1 cut(s) 527
MvaI CCWGG 1 cut(s) 527
MvnI CGCG 2 cut(s) 280, 390
MwoI GCNNNNNNNGC 2 cut(s) 126, 164
NaeI GCCGGC 1 cut(s) 439
NgoMIV GCCGGC 1 cut(s) 437
NlaIII CATG 1 cut(s) 625
NlaIV GGNNCC 2 cut(s) 240, 524
NmuCI GTSAC 2 cut(s) 231, 337
OliI CACNNNNGTG 1 cut(s) 71
PcsI WCGNNNNNNNCGW 1 cut(s) 552
PdiI GCCGGC 1 cut(s) 439
PfeI GAWTC 1 cut(s) 17
PinAI ACCGGT 1 cut(s) 235
PkrI GCNGC 4 cut(s) 112, 157, 304, 389
PshAI GACNNNNGTC 1 cut(s) 92
Psp124BI GAGCTC 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 525
PspGI CCWGG 1 cut(s) 525
PspN4I GGNNCC 2 cut(s) 240, 524
RsaI GTAC 3 cut(s) 148, 163, 518
RsaNI GTAC 3 cut(s) 147, 162, 517
RseI CAYNNNNRTG 1 cut(s) 71
SacI GAGCTC 1 cut(s) 221
SaqAI TTAA 1 cut(s) 543
SatI GCNGC 4 cut(s) 111, 156, 303, 388
ScaI AGTACT 1 cut(s) 163
ScrFI CCNGG 1 cut(s) 527
SduI GDGCHC 1 cut(s) 221
SgrAI CRCCGGYG 1 cut(s) 437
SmiMI CAYNNNNRTG 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 1 cut(s) 79
SsiI CCGC 6 cut(s) 111, 278, 388, 404, 425, 449
SstI GAGCTC 1 cut(s) 221
StyD4I CCNGG 1 cut(s) 525
TaaI ACNGT 3 cut(s) 70, 548, 617
TaiI ACGT 1 cut(s) 555
TaqI TCGA 1 cut(s) 27
TasI AATT 1 cut(s) 79
TatI WGTACW 1 cut(s) 161
TauI GCSGC 2 cut(s) 113, 390
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 1 cut(s) 543
Tru9I TTAA 1 cut(s) 543
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 2 cut(s) 231, 337
TseI GCWGC 2 cut(s) 155, 302
Tsp45I GTSAC 2 cut(s) 231, 337
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 551
TspRI CASTG 1 cut(s) 73
ZrmI AGTACT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.