Rroxscaffold_2G00146120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012977
Physical Location & Seq
Forward (+)
84001191 .. 84001778
588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00146120.1

Sequence Viewer

Length: 588 bp
ATGAAATTCGTGTTGGATTCTCCTCTCGAAGCTCTCGCTTTTGACTACGTTAGCTTAGGGTTGATCACCATTATCAATAGTCTCTGGACTTGGGTCGCCGTCGTCACCGCCGCCGTTAGCTTCTGGAGGCTCAGACCTAGAGCCCTTGAATGCTTGAAGTTCCACTCCAACGACGTCGTCAAGAGCTCAAATGGGTGTTCTTCATTTCCTGAAACATCGCCACCGGTCACGGTGGAGGAGGAGTCGCCAAGCTCGGTTTCAGCTCCATCTCGAGCACCAGTAGCCGTTTCATCATCAGGTAGATTTGAAGATGACGGAGGTTTGACGAAAGGCGTCAAGTTTACATTGTATTTTGATGAGGATACAAACGGAGACGTTGGCGGTGAAGGTGAAGGTGAGTTGACGGCGGAGGAGACGGAAGAGAGTGGCGGTGTGAACTGGTGGGAGAGTGGTTTGAGGATGAGGACGGAGGAGAAGAGTTGGTACAAGTGCCAGGATTTGACGGTGTTTAACGGCAACGTCGTTAGGTTATGGGATAATAATCACGGCTGCAGAGTCAACTCACCGCAGCGCTGCGTCGTTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

21.55

Weight (kDa)

4.65

Isoelectric Point (pI)

51.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012977)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43110 AT5G20790 AT5G20790
fragaria_vesca FvH4_1g09230
malus_domestica MD02G1099300.v1.1 MD15G1222300.v1.1
prunus_persica Prupe.7G193600_v2.0.a1
pyrus_communis pycom02g07740
rosa_chinensis RchiOBHm_Chr2g0095761
rosa_laevigata RLG00000016590
rosa_multiflora Rmu_sc0005941.1_g000003
rosa_roxburghii Rroxscaffold_2G00146120
rosa_rugosa Rorug02G0053000
rosa_samantha Rh2AG101400 Rh2BG103100 Rh2CG105400 Rh2DG102800
rosa_wichuraiana Rw2G007690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 177
AciI CCGC 6 cut(s) 108, 111, 381, 407, 429, 566
AcsI RAATTY 1 cut(s) 5
AcyI GRCGYC 2 cut(s) 174, 333
AfaI GTAC 1 cut(s) 485
AfeI AGCGCT 1 cut(s) 572
AgeI ACCGGT 1 cut(s) 223
AgsI TTSAA 3 cut(s) 149, 157, 308
AjnI CCWGG 1 cut(s) 492
AjuI GAANNNNNNNTTGG 3 cut(s) 28, 241, 273
AluBI AGCT 6 cut(s) 32, 54, 120, 186, 252, 263
AluI AGCT 6 cut(s) 32, 54, 120, 186, 252, 263
Alw21I GWGCWC 2 cut(s) 188, 277
Alw26I GTCTC 3 cut(s) 86, 366, 407
Ama87I CYCGRG 1 cut(s) 270
Aor51HI AGCGCT 1 cut(s) 572
ApeKI GCWGC 3 cut(s) 549, 568, 573
ApoI RAATTY 1 cut(s) 5
AsiGI ACCGGT 1 cut(s) 223
AspLEI GCGC 1 cut(s) 573
AsuHPI GGTGA 6 cut(s) 58, 97, 395, 401, 407, 555
AvaI CYCGRG 1 cut(s) 270
BanII GRGCYC 2 cut(s) 145, 188
BarI GAAGNNNNNNTAC 2 cut(s) 467, 499
Bbv12I GWGCWC 2 cut(s) 188, 277
BbvI GCAGC 3 cut(s) 536, 560, 580
BccI CCATC 1 cut(s) 274
BceAI ACGGC 6 cut(s) 83, 98, 269, 420, 529, 562
BciT130I CCWGG 1 cut(s) 494
BciVI GTATCC 1 cut(s) 355
BclI TGATCA 1 cut(s) 63
BcoDI GTCTC 3 cut(s) 86, 366, 407
BfaI CTAG 1 cut(s) 138
BfmI CTRYAG 1 cut(s) 550
BfoI RGCGCY 1 cut(s) 574
BfuI GTATCC 1 cut(s) 355
BisI GCNGC 4 cut(s) 111, 550, 569, 574
BlsI GCNGC 4 cut(s) 112, 551, 570, 575
Bme1390I CCNGG 1 cut(s) 494
BmeT110I CYCGRG 1 cut(s) 270
BmrFI CCNGG 1 cut(s) 494
BoxI GACNNNNGTC 1 cut(s) 92
BpmI CTGGAG 1 cut(s) 145
Bpu10I CCTNAGC 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 540
BsaHI GRCGYC 2 cut(s) 174, 333
BsaWI WCCGGW 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bse118I RCCGGY 1 cut(s) 223
Bse1I ACTGG 2 cut(s) 278, 443
Bse8I GATNNNNATC 1 cut(s) 540
BseBI CCWGG 1 cut(s) 494
BseGI GGATG 1 cut(s) 465
BseJI GATNNNNATC 1 cut(s) 540
BseMII CTCAG 1 cut(s) 145
BseNI ACTGG 2 cut(s) 278, 443
BseRI GAGGAG 5 cut(s) 12, 251, 254, 425, 485
BseXI GCAGC 3 cut(s) 536, 560, 580
BshTI ACCGGT 1 cut(s) 223
BsiHKAI GWGCWC 2 cut(s) 188, 277
BsiHKCI CYCGRG 1 cut(s) 270
BsiSI CCGG 1 cut(s) 224
BsmAI GTCTC 3 cut(s) 86, 366, 407
BsmBI CGTCTC 2 cut(s) 366, 407
BsmI GAATGC 1 cut(s) 155
BsoBI CYCGRG 1 cut(s) 270
Bsp1286I GDGCHC 3 cut(s) 145, 188, 277
Bsp143I GATC 1 cut(s) 63
BspACI CCGC 6 cut(s) 108, 111, 381, 407, 429, 566
BspCNI CTCAG 1 cut(s) 144
BspMAI CTGCAG 1 cut(s) 554
BsrFI RCCGGY 1 cut(s) 223
BsrI ACTGG 2 cut(s) 278, 443
BssAI RCCGGY 1 cut(s) 223
BssMI GATC 1 cut(s) 63
BssNI GRCGYC 2 cut(s) 174, 333
Bst2UI CCWGG 1 cut(s) 494
Bst4CI ACNGT 2 cut(s) 232, 505
Bst6I CTCTTC 2 cut(s) 414, 470
BstACI GRCGYC 2 cut(s) 174, 333
BstDEI CTNAG 2 cut(s) 55, 131
BstF5I GGATG 1 cut(s) 465
BstH2I RGCGCY 1 cut(s) 574
BstHHI GCGC 1 cut(s) 573
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 3 cut(s) 86, 366, 407
BstMBI GATC 1 cut(s) 63
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstNI CCWGG 1 cut(s) 494
BstPAI GACNNNNGTC 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 492
BstSFI CTRYAG 1 cut(s) 550
BstV1I GCAGC 3 cut(s) 536, 560, 580
BsuI GTATCC 1 cut(s) 355
BtgZI GCGATG 1 cut(s) 201
BtsCI GGATG 1 cut(s) 465
CfoI GCGC 1 cut(s) 573
Cfr10I RCCGGY 1 cut(s) 223
CseI GACGC 2 cut(s) 322, 565
Csp6I GTAC 1 cut(s) 484
CspAI ACCGGT 1 cut(s) 223
CviQI GTAC 1 cut(s) 484
DdeI CTNAG 2 cut(s) 55, 131
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
Eam1104I CTCTTC 2 cut(s) 414, 470
EarI CTCTTC 2 cut(s) 414, 470
EciI GGCGGA 1 cut(s) 422
Ecl136II GAGCTC 1 cut(s) 186
Eco24I GRGCYC 2 cut(s) 145, 188
Eco47III AGCGCT 1 cut(s) 572
Eco53kI GAGCTC 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 270
EcoICRI GAGCTC 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 492
EcoT38I GRGCYC 2 cut(s) 145, 188
Esp3I CGTCTC 2 cut(s) 366, 407
FaiI YATR 1 cut(s) 532
FbaI TGATCA 1 cut(s) 63
Fnu4HI GCNGC 4 cut(s) 111, 550, 569, 574
FokI GGATG 1 cut(s) 472
FriOI GRGCYC 2 cut(s) 145, 188
Fsp4HI GCNGC 4 cut(s) 111, 550, 569, 574
FspBI CTAG 1 cut(s) 138
GlaI GCGC 1 cut(s) 572
GluI GCNGC 4 cut(s) 111, 550, 569, 574
GsuI CTGGAG 1 cut(s) 145
HaeII RGCGCY 1 cut(s) 574
HapII CCGG 1 cut(s) 224
HgaI GACGC 2 cut(s) 322, 565
HhaI GCGC 1 cut(s) 573
Hin1I GRCGYC 2 cut(s) 174, 333
Hin6I GCGC 1 cut(s) 571
HinP1I GCGC 1 cut(s) 571
HincII GTYRAC 2 cut(s) 402, 559
HindII GTYRAC 2 cut(s) 402, 559
HinfI GANTC 3 cut(s) 17, 242, 555
HpaII CCGG 1 cut(s) 224
HphI GGTGA 6 cut(s) 58, 97, 395, 401, 407, 555
Hpy166II GTNNAC 4 cut(s) 342, 402, 436, 559
Hpy188I TCNGA 1 cut(s) 134
Hpy188III TCNNGA 6 cut(s) 26, 85, 124, 181, 209, 270
Hpy8I GTNNAC 4 cut(s) 342, 402, 436, 559
Hpy99I CGWCG 5 cut(s) 104, 176, 179, 524, 581
HpyAV CCTTC 2 cut(s) 380, 386
HpyCH4III ACNGT 2 cut(s) 232, 505
HpyCH4IV ACGT 4 cut(s) 48, 174, 375, 519
HpyCH4V TGCA 1 cut(s) 552
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 2 cut(s) 55, 131
HpySE526I ACGT 4 cut(s) 48, 174, 375, 519
Hsp92I GRCGYC 2 cut(s) 174, 333
HspAI GCGC 1 cut(s) 571
Ksp22I TGATCA 1 cut(s) 63
Kzo9I GATC 1 cut(s) 63
LmnI GCTCC 1 cut(s) 268
LpnPI CCDG 9 cut(s) 70, 109, 222, 237, 282, 291, 424, 479, 506
Lsp1109I GCAGC 3 cut(s) 536, 560, 580
MaeI CTAG 1 cut(s) 138
MaeII ACGT 4 cut(s) 48, 174, 375, 519
MaeIII GTNAC 2 cut(s) 103, 226
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 4 cut(s) 192, 320, 431, 487
MhlI GDGCHC 3 cut(s) 145, 188, 277
MluCI AATT 1 cut(s) 5
MlyI GAGTC 2 cut(s) 251, 564
MmeI TCCRAC 1 cut(s) 192
MseI TTAA 1 cut(s) 510
MspI CCGG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 494
Mva1269I GAATGC 1 cut(s) 155
MvaI CCWGG 1 cut(s) 494
MwoI GCNNNNNNNGC 1 cut(s) 281
NdeII GATC 1 cut(s) 63
NmuCI GTSAC 2 cut(s) 103, 226
PaeR7I CTCGAG 1 cut(s) 270
PcsI WCGNNNNNNNCGW 1 cut(s) 519
PctI GAATGC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 17
PflFI GACNNNGTC 1 cut(s) 176
PinAI ACCGGT 1 cut(s) 223
PkrI GCNGC 4 cut(s) 112, 551, 570, 575
PleI GAGTC 2 cut(s) 250, 563
PpsI GAGTC 2 cut(s) 250, 563
PshAI GACNNNNGTC 1 cut(s) 92
Psp124BI GAGCTC 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 492
PspGI CCWGG 1 cut(s) 492
PstI CTGCAG 1 cut(s) 554
PsyI GACNNNGTC 1 cut(s) 176
RsaI GTAC 1 cut(s) 485
RsaNI GTAC 1 cut(s) 484
SacI GAGCTC 1 cut(s) 188
SaqAI TTAA 1 cut(s) 510
SatI GCNGC 4 cut(s) 111, 550, 569, 574
Sau3AI GATC 1 cut(s) 63
SchI GAGTC 2 cut(s) 251, 564
ScrFI CCNGG 1 cut(s) 494
SduI GDGCHC 3 cut(s) 145, 188, 277
SfcI CTRYAG 1 cut(s) 550
Sfr274I CTCGAG 1 cut(s) 270
SlaI CTCGAG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 270
SmoI CTYRAG 1 cut(s) 270
Sse9I AATT 1 cut(s) 5
SsiI CCGC 6 cut(s) 108, 111, 381, 407, 429, 566
SspMI CTAG 1 cut(s) 138
SstI GAGCTC 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 492
TaaI ACNGT 2 cut(s) 232, 505
TaiI ACGT 4 cut(s) 51, 177, 378, 522
TaqI TCGA 2 cut(s) 27, 271
TasI AATT 1 cut(s) 5
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TseFI GTSAC 2 cut(s) 103, 226
TseI GCWGC 3 cut(s) 549, 568, 573
Tsp45I GTSAC 2 cut(s) 103, 226
TspDTI ATGAA 3 cut(s) 17, 192, 279
TspGWI ACGGA 4 cut(s) 330, 384, 431, 482
Tth111I GACNNNGTC 1 cut(s) 176
XapI RAATTY 1 cut(s) 5
XhoI CTCGAG 1 cut(s) 270
XspI CTAG 1 cut(s) 138
ZraI GACGTC 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.