AT3G43980

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011986
Physical Location & Seq
Reverse (-)
15778275 .. 15779360
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G43980.1

Sequence Viewer

Length: 171 bp
ATGGGTCACTCTAATGTCTGGAACTCTCATCCGAAGAAGTACGGTCCTGGATCTCGTTTATGCCGTGTGTGCGGGAACTCACACGGGCTTATCAGGAAGTATGGTTTGAATTGCTGCAGACAGTGTTTCCGCAGTAACGCCAAGGAGATCGGATTCATTAAGTACCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0010941 GO:0010942 GO:0012505 GO:0015031 GO:0015833 GO:0015935 GO:0016020 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0019538 GO:0022626 GO:0022627 GO:0030867 GO:0031090 GO:0031974 GO:0031981 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0042175 GO:0042788 GO:0042886 GO:0042981 GO:0043043 GO:0043065 GO:0043067 GO:0043068 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046872 GO:0046907 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0098552 GO:0098554 GO:0098556 GO:0098562 GO:0098588 GO:0098827 GO:1901360 GO:1901361 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S14

Protein Analysis

56

Amino Acids

6.43

Weight (kDa)

10.07

Isoelectric Point (pI)

16.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S14 PF00253 7 - 55 5.1e-14 Ribosomal protein S14p/S29e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 72, 130
AclWI GGATC 1 cut(s) 58
AfaI GTAC 2 cut(s) 41, 164
AgsI TTSAA 1 cut(s) 109
AjnI CCWGG 1 cut(s) 46
AlwI GGATC 1 cut(s) 58
ApeKI GCWGC 1 cut(s) 114
AspS9I GGNCC 1 cut(s) 44
AvaII GGWCC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 101
BceAI ACGGC 1 cut(s) 48
BciT130I CCWGG 1 cut(s) 48
BfmI CTRYAG 1 cut(s) 115
BisI GCNGC 1 cut(s) 115
BlsI GCNGC 1 cut(s) 116
Bme1390I CCNGG 1 cut(s) 48
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 141
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 1 cut(s) 28
BseXI GCAGC 1 cut(s) 101
Bsp143I GATC 2 cut(s) 50, 147
BspACI CCGC 2 cut(s) 72, 130
BspMAI CTGCAG 1 cut(s) 119
BspPI GGATC 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 2 cut(s) 50, 147
BssT1I CCWWGG 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 3 cut(s) 44, 123, 167
BstF5I GGATG 1 cut(s) 28
BstKTI GATC 2 cut(s) 53, 150
BstMBI GATC 2 cut(s) 50, 147
BstMWI GCNNNNNNNGC 1 cut(s) 69
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 46
BstSFI CTRYAG 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 101
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
BtsCI GGATG 1 cut(s) 28
BtsIMutI CAGTG 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 44
Csp6I GTAC 2 cut(s) 40, 163
CviJI RGCY 1 cut(s) 88
CviKI_1 RGCY 1 cut(s) 88
CviQI GTAC 2 cut(s) 40, 163
DpnI GATC 2 cut(s) 52, 149
DpnII GATC 2 cut(s) 50, 147
Eco130I CCWWGG 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 141
FaiI YATR 2 cut(s) 61, 102
FauI CCCGC 1 cut(s) 65
Fnu4HI GCNGC 1 cut(s) 115
FokI GGATG 1 cut(s) 15
Fsp4HI GCNGC 1 cut(s) 115
GluI GCNGC 1 cut(s) 115
HinfI GANTC 1 cut(s) 153
Hpy188I TCNGA 2 cut(s) 33, 152
Hpy188III TCNNGA 2 cut(s) 19, 94
HpyCH4III ACNGT 3 cut(s) 44, 123, 167
HpyCH4V TGCA 1 cut(s) 117
HpyF10VI GCNNNNNNNGC 1 cut(s) 69
Kzo9I GATC 2 cut(s) 50, 147
LpnPI CCDG 4 cut(s) 4, 33, 60, 79
Lsp1109I GCAGC 1 cut(s) 101
MaeIII GTNAC 2 cut(s) 5, 134
MalI GATC 2 cut(s) 52, 149
MboI GATC 2 cut(s) 50, 147
MboII GAAGA 1 cut(s) 46
MflI RGATCY 1 cut(s) 50
MluCI AATT 1 cut(s) 109
MseI TTAA 2 cut(s) 159, 169
MslI CAYNNNNRTG 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 48
MvaI CCWGG 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 69
NdeII GATC 2 cut(s) 50, 147
NmuCI GTSAC 1 cut(s) 5
PcsI WCGNNNNNNNCGW 1 cut(s) 61
PfeI GAWTC 1 cut(s) 153
PfoI TCCNGGA 1 cut(s) 46
PkrI GCNGC 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PspPI GGNCC 1 cut(s) 44
PstI CTGCAG 1 cut(s) 119
PsuI RGATCY 1 cut(s) 50
RsaI GTAC 2 cut(s) 41, 164
RsaNI GTAC 2 cut(s) 40, 163
RseI CAYNNNNRTG 1 cut(s) 12
SaqAI TTAA 2 cut(s) 159, 169
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 2 cut(s) 50, 147
Sau96I GGNCC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 48
SfcI CTRYAG 1 cut(s) 115
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 12
Sse9I AATT 1 cut(s) 109
SsiI CCGC 2 cut(s) 72, 130
StyD4I CCNGG 1 cut(s) 46
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 3 cut(s) 44, 123, 167
TasI AATT 1 cut(s) 109
TfiI GAWTC 1 cut(s) 153
Tru1I TTAA 2 cut(s) 159, 169
Tru9I TTAA 2 cut(s) 159, 169
TscAI CASTG 1 cut(s) 128
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 1 cut(s) 114
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 145
TspRI CASTG 1 cut(s) 128
VpaK11BI GGWCC 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.